Wall clock time and date at job start Mon Mar 30 2020 00:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 6 6 O 1.42900 * 109.47811 * 180.02562 * 5 4 2 7 7 C 1.35896 * 117.00128 * 179.97438 * 6 5 4 8 8 C 1.38726 * 120.05730 * 359.72975 * 7 6 5 9 9 C 1.38145 * 119.94311 * 179.74451 * 8 7 6 10 10 C 1.38271 * 120.05566 * 0.50576 * 9 8 7 11 11 C 1.38266 * 120.10974 * 359.76963 * 10 9 8 12 12 C 1.38148 * 120.05760 * 359.97438 * 11 10 9 13 13 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 14 14 O 1.21293 * 119.99770 * 120.00322 * 13 2 1 15 15 N 1.34774 * 120.00011 * 300.00244 * 13 2 1 16 16 C 1.37097 * 120.00113 * 179.97438 * 15 13 2 17 17 H 1.08000 * 119.99621 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99512 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00290 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47308 * 89.99890 * 20 18 16 22 22 H 1.48497 * 109.47110 * 210.00231 * 20 18 16 23 23 H 1.48499 * 109.46850 * 329.99751 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 1.09001 * 109.46924 * 300.00271 * 5 4 2 30 30 H 1.09000 * 109.47104 * 59.99686 * 5 4 2 31 31 H 1.08001 * 120.02821 * 359.97438 * 8 7 6 32 32 H 1.07996 * 119.97438 * 180.27824 * 9 8 7 33 33 H 1.07996 * 119.94379 * 179.75285 * 10 9 8 34 34 H 1.08002 * 119.97302 * 179.97438 * 11 10 9 35 35 H 1.07994 * 120.02712 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00125 * 0.02562 * 15 13 2 37 37 H 0.97006 * 119.99355 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6353 0.0689 -2.4953 6 8 2.1112 -0.6050 -3.6621 7 6 1.8339 -0.0311 -4.8623 8 6 1.1136 1.1533 -4.9162 9 6 0.8376 1.7375 -6.1372 10 6 1.2695 1.1372 -7.3056 11 6 1.9826 -0.0463 -7.2548 12 6 2.2658 -0.6317 -6.0359 13 6 2.0323 -0.7104 1.2306 14 8 2.7297 -1.6965 1.1193 15 7 1.7067 -0.2499 2.4546 16 6 2.1633 -0.8964 3.5741 17 1 2.7835 -1.7749 3.4750 18 6 1.8271 -0.4219 4.8360 19 7 2.2652 -1.0414 5.9090 20 14 0.7525 1.0964 5.0074 21 1 -0.6750 0.6900 5.0524 22 1 1.1033 1.8121 6.2603 23 1 0.9753 1.9940 3.8456 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 0.5490 0.1471 -2.5390 30 1 2.0699 1.0674 -2.4494 31 1 0.7722 1.6203 -4.0042 32 1 0.2808 2.6619 -6.1796 33 1 1.0492 1.5934 -8.2594 34 1 2.3185 -0.5135 -8.1687 35 1 2.8224 -1.5563 -5.9969 36 1 1.1487 0.5385 2.5436 37 1 2.0302 -0.7104 6.7900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073060565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:03 Heat of formation + Delta-G solvation = -83.296065 kcal Electronic energy + Delta-G solvation = -18825.766804 eV Core-core repulsion = 15760.074093 eV Total energy + Delta-G solvation = -3065.692711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11467 -40.52559 -38.42419 -36.28331 -35.72739 -33.76422 -31.95313 -31.11402 -29.60908 -27.21238 -25.92583 -23.74385 -23.14907 -22.09316 -21.05543 -20.06022 -19.10316 -17.87072 -17.17225 -17.04330 -16.74651 -16.49463 -16.00448 -15.57821 -15.25431 -14.74812 -14.72065 -14.43456 -14.28624 -14.04583 -13.80161 -13.50954 -13.02282 -12.96471 -12.51916 -12.45393 -12.39243 -12.21831 -12.02482 -11.96847 -11.62797 -11.55078 -11.49573 -10.40209 -10.27813 -9.91481 -9.13228 -8.43826 -6.05415 0.43096 0.53100 1.28621 1.34265 1.43515 1.91460 2.15572 2.21587 2.88817 2.94800 3.12381 3.78391 3.87122 3.93174 3.98714 4.04917 4.25699 4.28046 4.29913 4.38195 4.50916 4.54406 4.60465 4.76951 4.91115 4.91237 4.97746 5.12837 5.27085 5.33514 5.42135 5.51973 5.53012 5.63759 5.91323 5.93245 6.51267 6.54969 6.84303 7.35785 7.92049 8.73881 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.047406 B = 0.003287 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.501582 B = 8517.591974 C = 8984.883447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.121 0.879 4 C -0.090 4.090 5 C 0.067 3.933 6 O -0.339 6.339 7 C 0.106 3.894 8 C -0.219 4.219 9 C -0.085 4.085 10 C -0.166 4.166 11 C -0.085 4.085 12 C -0.177 4.177 13 C 0.451 3.549 14 O -0.629 6.629 15 N -0.585 5.585 16 C -0.333 4.333 17 H 0.053 0.947 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.254 1.254 22 H -0.274 1.274 23 H -0.229 1.229 24 H 0.049 0.951 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.391 0.609 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 11.910 -24.407 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.139 0.861 4 C -0.129 4.129 5 C -0.007 4.007 6 O -0.253 6.253 7 C 0.061 3.939 8 C -0.238 4.238 9 C -0.103 4.103 10 C -0.184 4.184 11 C -0.102 4.102 12 C -0.196 4.196 13 C 0.239 3.761 14 O -0.515 6.515 15 N -0.225 5.225 16 C -0.462 4.462 17 H 0.072 0.928 18 C -0.214 4.214 19 N -0.574 5.574 20 Si 0.782 3.218 21 H -0.178 1.178 22 H -0.199 1.199 23 H -0.152 1.152 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.144 0.856 36 H 0.227 0.773 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.586 11.053 -24.189 27.656 hybrid contribution -0.062 0.144 1.094 1.106 sum -7.648 11.197 -23.095 26.781 Atomic orbital electron populations 1.21934 0.91140 1.02902 1.04378 1.21058 0.98873 1.00847 0.90239 0.86126 1.21113 1.01409 0.99186 0.91143 1.22926 1.00225 0.95949 0.81648 1.86044 1.74955 1.51087 1.13251 1.19399 0.95846 0.93188 0.85448 1.21554 1.04519 0.96919 1.00768 1.21340 0.97649 0.99850 0.91456 1.21448 1.00750 0.96699 0.99465 1.21291 0.96541 0.95432 0.96970 1.20727 1.05535 1.02565 0.90783 1.21001 0.83442 0.86319 0.85332 1.90546 1.43274 1.30493 1.87230 1.42022 1.47568 1.27894 1.05012 1.19032 1.31100 1.11320 0.84736 0.92849 1.26157 0.99132 1.02391 0.93680 1.69814 1.46146 1.42478 0.98919 0.85392 0.78819 0.77564 0.79978 1.17839 1.19890 1.15223 0.93146 0.88044 0.91237 0.92655 0.92307 0.89463 0.90095 0.83955 0.83317 0.83447 0.83208 0.85572 0.77329 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.84 71.98 0.64 -2.74 16 2 C -0.09 -2.66 2.72 -11.54 -0.03 -2.69 16 3 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 4 C -0.09 -2.74 4.40 30.59 0.13 -2.61 16 5 C 0.07 1.50 4.50 71.98 0.32 1.82 16 6 O -0.34 -9.23 10.14 -92.38 -0.94 -10.17 16 7 C 0.11 2.50 6.69 22.51 0.15 2.65 16 8 C -0.22 -4.05 9.04 22.36 0.20 -3.85 16 9 C -0.09 -1.26 10.04 22.26 0.22 -1.03 16 10 C -0.17 -2.32 10.04 22.28 0.22 -2.09 16 11 C -0.08 -1.35 10.04 22.26 0.22 -1.13 16 12 C -0.18 -3.78 9.99 22.37 0.22 -3.56 16 13 C 0.45 20.62 7.11 87.66 0.62 21.24 16 14 O -0.63 -35.91 15.50 -3.07 -0.05 -35.96 16 15 N -0.58 -27.72 4.98 -306.98 -1.53 -29.25 16 16 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 17 H 0.05 3.78 7.39 -2.91 -0.02 3.75 16 18 C -0.01 -0.83 5.50 84.92 0.47 -0.36 16 19 N -0.93 -56.48 13.96 21.66 0.30 -56.17 16 20 Si 0.96 38.34 27.74 68.60 1.90 40.24 16 21 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 1.52 6.56 -2.39 -0.02 1.51 16 26 H 0.07 1.50 7.56 -2.38 -0.02 1.49 16 27 H 0.05 1.95 7.95 -2.39 -0.02 1.93 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 1.53 6.07 -2.39 -0.01 1.52 16 30 H 0.08 1.49 7.68 -2.39 -0.02 1.47 16 31 H 0.14 2.09 6.30 -2.91 -0.02 2.07 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 36 H 0.39 15.18 5.18 -92.71 -0.48 14.70 16 37 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -78.93 311.77 4.48 -74.45 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.53 Total: 30.03 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.25 Total: -13.17 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.23 Total: -85.42 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.98 Total: -46.13 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -78.93 4.48 -74.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073060565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.845 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds