Wall clock time and date at job start Mon Mar 30 2020 00:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47431 * 2 1 4 4 O 1.42903 * 109.47222 * 119.99808 * 2 1 3 5 5 C 1.35907 * 116.99901 * 84.39373 * 4 2 1 6 6 C 1.38870 * 119.97103 * 354.95148 * 5 4 2 7 7 C 1.37968 * 120.02610 * 180.25195 * 6 5 4 8 8 C 1.39104 * 119.97118 * 359.51831 * 7 6 5 9 9 N 1.39510 * 120.03008 * 180.23421 * 8 7 6 10 10 C 1.46501 * 120.00528 * 117.06869 * 9 8 7 11 11 C 1.34779 * 119.99983 * 297.06998 * 9 8 7 12 12 O 1.21772 * 119.99884 * 354.73712 * 11 9 8 13 13 C 1.41776 * 120.00372 * 174.73648 * 11 9 8 14 14 H 1.07997 * 119.99662 * 359.97438 * 13 11 9 15 15 C 1.40138 * 119.99960 * 179.97438 * 13 11 9 16 16 N 1.30629 * 120.00192 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99638 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47377 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47313 * 120.00527 * 17 15 13 20 20 H 1.48503 * 109.46919 * 240.00235 * 17 15 13 21 21 C 1.39110 * 119.94353 * 0.50344 * 8 7 6 22 22 C 1.37965 * 119.96734 * 359.72733 * 21 8 7 23 23 H 1.09004 * 109.47281 * 300.00324 * 1 2 3 24 24 H 1.09008 * 109.46918 * 60.00217 * 1 2 3 25 25 H 1.09000 * 109.47607 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47281 * 239.99676 * 2 1 3 27 27 H 1.09001 * 109.47442 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46893 * 299.99799 * 3 2 1 29 29 H 1.08991 * 109.47279 * 59.99721 * 3 2 1 30 30 H 1.07997 * 119.98407 * 359.97438 * 6 5 4 31 31 H 1.07994 * 120.01303 * 179.74782 * 7 6 5 32 32 H 1.08995 * 109.47190 * 89.99657 * 10 9 8 33 33 H 1.08997 * 109.47322 * 210.00135 * 10 9 8 34 34 H 1.09002 * 109.46620 * 330.00140 * 10 9 8 35 35 H 0.96998 * 119.99928 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.01465 * 179.70188 * 21 8 7 37 37 H 1.08006 * 119.98342 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1005 -2.0279 1.1022 6 6 1.6431 -2.7022 -0.0224 7 6 1.7334 -4.0774 -0.0870 8 6 2.2919 -4.7876 0.9707 9 7 2.3882 -6.1778 0.9046 10 6 3.7038 -6.8225 0.9166 11 6 1.2710 -6.9279 0.8296 12 8 0.1767 -6.4007 0.9160 13 6 1.3697 -8.3308 0.6501 14 1 2.3402 -8.7984 0.5730 15 6 0.2080 -9.1108 0.5726 16 7 -0.9659 -8.5452 0.6654 17 14 0.3381 -10.9592 0.3368 18 1 1.7690 -11.3491 0.2610 19 1 -0.3039 -11.6509 1.4833 20 1 -0.3474 -11.3471 -0.9221 21 6 2.7492 -4.1110 2.0968 22 6 2.6534 -2.7361 2.1609 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.2126 -2.1503 -0.8447 31 1 1.3740 -4.6019 -0.9599 32 1 3.9956 -7.0334 1.9454 33 1 3.6568 -7.7547 0.3538 34 1 4.4377 -6.1587 0.4596 35 1 -1.7699 -9.0850 0.6114 36 1 3.1786 -4.6616 2.9206 37 1 3.0080 -2.2105 3.0353 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077362913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:42 Heat of formation + Delta-G solvation = -65.534854 kcal Electronic energy + Delta-G solvation = -19572.732986 eV Core-core repulsion = 16507.810459 eV Total energy + Delta-G solvation = -3064.922527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35467 -40.14954 -38.14791 -35.67434 -34.63730 -33.98543 -31.92731 -30.46591 -28.43562 -28.07335 -26.99306 -24.23043 -23.86541 -21.99871 -21.09476 -19.25647 -18.54452 -17.86114 -17.34102 -16.88375 -16.39377 -15.88924 -15.66769 -15.49347 -14.79554 -14.77794 -14.39214 -14.19952 -13.63992 -13.53834 -13.50690 -13.25452 -13.16925 -13.09088 -12.90335 -12.75437 -12.68511 -12.25253 -12.11607 -11.96371 -11.70369 -11.49246 -10.97762 -9.99117 -9.84423 -9.62801 -8.63111 -8.33877 -6.96582 0.38338 0.46765 1.39010 1.39876 1.58260 2.21865 2.27118 2.40319 2.77845 2.85568 3.63798 3.81573 3.90125 3.92632 4.03920 4.17922 4.37119 4.40059 4.48723 4.63623 4.69224 4.79831 4.82297 4.84783 4.89872 4.95434 5.02947 5.13633 5.22412 5.26315 5.32073 5.38646 5.58450 5.70022 5.89342 6.09318 6.45820 6.68488 6.79422 7.38724 8.44623 8.64350 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.004373 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.376874 B = 6401.734259 C = 6849.854588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 C -0.141 4.141 4 O -0.319 6.319 5 C 0.110 3.890 6 C -0.192 4.192 7 C -0.098 4.098 8 C 0.117 3.883 9 N -0.612 5.612 10 C 0.099 3.901 11 C 0.537 3.463 12 O -0.628 6.628 13 C -0.565 4.565 14 H 0.097 0.903 15 C 0.030 3.970 16 N -0.807 5.807 17 Si 1.000 3.000 18 H -0.243 1.243 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.103 4.103 22 C -0.140 4.140 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.276 0.724 36 H 0.137 0.863 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 12.656 -1.879 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.010 3.990 3 C -0.198 4.198 4 O -0.234 6.234 5 C 0.065 3.935 6 C -0.211 4.211 7 C -0.118 4.118 8 C 0.025 3.975 9 N -0.344 5.344 10 C -0.043 4.043 11 C 0.347 3.653 12 O -0.515 6.515 13 C -0.601 4.601 14 H 0.115 0.885 15 C -0.188 4.188 16 N -0.436 5.436 17 Si 0.818 3.182 18 H -0.165 1.165 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.123 4.123 22 C -0.159 4.159 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.978 13.029 -1.680 15.370 hybrid contribution -0.510 -1.026 -0.311 1.187 sum 7.467 12.003 -1.990 14.276 Atomic orbital electron populations 1.22399 0.94987 1.02266 1.04122 1.22728 0.94647 0.94771 0.86901 1.21849 1.02078 0.91732 1.04094 1.86073 1.81557 1.15425 1.40319 1.18977 0.96927 0.83058 0.94576 1.21192 1.06311 0.93815 0.99786 1.21075 0.99039 0.94035 0.97698 1.17960 1.00802 0.84647 0.94105 1.45595 1.07995 1.02653 1.78202 1.21671 0.82633 0.98520 1.01501 1.17458 0.81949 0.88490 0.77406 1.90605 1.28103 1.75079 1.57752 1.20741 0.95388 0.91770 1.52156 0.88536 1.27091 0.93821 1.06625 0.91217 1.70212 0.99506 1.39357 1.34525 0.84944 0.80377 0.74314 0.78514 1.16538 1.19295 1.19309 1.21211 1.01047 0.93983 0.96076 1.20450 1.03715 0.92594 0.99109 0.91489 0.88686 0.93961 0.90678 0.91573 0.88300 0.91456 0.83807 0.88554 0.93062 0.90698 0.90977 0.91376 0.84500 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 9.16 71.98 0.66 -3.13 16 2 C 0.07 1.40 2.85 30.59 0.09 1.49 16 3 C -0.14 -2.10 9.56 71.98 0.69 -1.42 16 4 O -0.32 -9.10 9.80 -92.51 -0.91 -10.01 16 5 C 0.11 3.66 6.60 22.57 0.15 3.81 16 6 C -0.19 -6.84 8.21 22.36 0.18 -6.65 16 7 C -0.10 -4.28 9.28 22.41 0.21 -4.07 16 8 C 0.12 5.26 4.88 38.34 0.19 5.45 16 9 N -0.61 -29.69 2.93 -664.33 -1.95 -31.64 16 10 C 0.10 3.66 10.08 127.77 1.29 4.94 16 11 C 0.54 32.07 7.27 85.12 0.62 32.69 16 12 O -0.63 -43.35 14.47 -4.58 -0.07 -43.42 16 13 C -0.57 -31.94 8.62 23.61 0.20 -31.74 16 14 H 0.10 4.82 5.77 -2.91 -0.02 4.80 16 15 C 0.03 1.65 5.50 85.33 0.47 2.12 16 16 N -0.81 -49.42 11.73 21.85 0.26 -49.17 16 17 Si 1.00 40.24 29.56 68.60 2.03 42.26 16 18 H -0.24 -8.91 7.11 99.48 0.71 -8.20 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 21 C -0.10 -3.88 9.77 22.41 0.22 -3.67 16 22 C -0.14 -4.61 9.98 22.35 0.22 -4.38 16 23 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.04 1.10 6.87 -2.39 -0.02 1.09 16 26 H 0.08 1.58 6.32 -2.38 -0.02 1.56 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.14 4.34 5.41 -2.91 -0.02 4.33 16 31 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.78 5.89 -2.39 -0.01 2.77 16 34 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 35 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 36 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -77.91 311.20 5.61 -72.29 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 1.07 Total: 24.24 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.18 Total: -4.56 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.69 Total: -80.81 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.97 Total: -53.43 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -77.91 5.61 -72.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077362913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.758 kcal (2) G-P(sol) polarization free energy of solvation -77.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds