Wall clock time and date at job start Sun Mar 29 2020 23:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47415 * 2 1 4 4 C 1.53006 * 109.46685 * 240.00380 * 2 1 3 5 5 O 1.42902 * 109.47365 * 120.00606 * 2 1 3 6 6 C 1.35909 * 117.00084 * 54.66846 * 5 2 1 7 7 C 1.38869 * 119.97007 * 4.99904 * 6 5 2 8 8 C 1.37959 * 120.02781 * 180.23332 * 7 6 5 9 9 C 1.39107 * 119.96999 * 359.47155 * 8 7 6 10 10 N 1.39517 * 120.02959 * 180.30201 * 9 8 7 11 11 C 1.34779 * 120.00035 * 25.47120 * 10 9 8 12 12 O 1.21774 * 120.00080 * 5.38726 * 11 10 9 13 13 C 1.41767 * 120.00025 * 185.39423 * 11 10 9 14 14 H 1.08010 * 120.00048 * 359.97438 * 13 11 10 15 15 C 1.40139 * 120.00175 * 179.97438 * 13 11 10 16 16 N 1.30625 * 119.99682 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99938 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47212 * 89.99931 * 17 15 13 19 19 H 1.48499 * 109.47089 * 209.99795 * 17 15 13 20 20 H 1.48502 * 109.47316 * 329.99897 * 17 15 13 21 21 C 1.39103 * 119.94466 * 0.27238 * 9 8 7 22 22 C 1.37969 * 119.96842 * 0.02562 * 21 9 8 23 23 H 1.09001 * 109.46608 * 305.46053 * 1 2 3 24 24 H 1.08996 * 109.47630 * 65.46149 * 1 2 3 25 25 H 1.08998 * 109.47330 * 185.46701 * 1 2 3 26 26 H 1.08996 * 109.47598 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47644 * 300.00811 * 3 2 1 28 28 H 1.09005 * 109.47021 * 60.00465 * 3 2 1 29 29 H 1.09005 * 109.47080 * 304.63773 * 4 2 1 30 30 H 1.09002 * 109.47275 * 64.63757 * 4 2 1 31 31 H 1.08993 * 109.47046 * 184.63810 * 4 2 1 32 32 H 1.08001 * 119.98580 * 359.97438 * 7 6 5 33 33 H 1.08004 * 120.01528 * 179.74135 * 8 7 6 34 34 H 0.97007 * 120.00073 * 205.47484 * 10 9 8 35 35 H 0.97006 * 119.99757 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.02124 * 180.02562 * 21 9 8 37 37 H 1.08002 * 119.98273 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0064 -0.6738 1.1667 6 6 1.5519 -1.9369 1.3786 7 6 0.7479 -2.5533 0.4288 8 6 0.2818 -3.8337 0.6449 9 6 0.6267 -4.5114 1.8097 10 7 0.1613 -5.8087 2.0266 11 6 -0.1609 -6.5930 0.9789 12 8 0.0460 -6.2067 -0.1573 13 6 -0.7409 -7.8677 1.1996 14 1 -0.9241 -8.2104 2.2073 15 6 -1.0764 -8.6829 0.1103 16 7 -0.8552 -8.2682 -1.1085 17 14 -1.8400 -10.3628 0.4012 18 1 -3.3188 -10.2340 0.4420 19 1 -1.4532 -11.2799 -0.7009 20 1 -1.3549 -10.9099 1.6937 21 6 1.4365 -3.8949 2.7579 22 6 1.8962 -2.6120 2.5422 23 1 -0.3632 0.5962 0.8371 24 1 -0.3634 0.4268 -0.9348 25 1 -0.3634 -1.0230 0.0979 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.6103 -1.7221 -1.2919 30 1 1.7460 -0.1616 -2.1374 31 1 3.1267 -0.7938 -1.2089 32 1 0.4838 -2.0286 -0.4775 33 1 -0.3469 -4.3114 -0.0921 34 1 0.0695 -6.1462 2.9314 35 1 -1.0872 -8.8327 -1.8625 36 1 1.7053 -4.4200 3.6624 37 1 2.5246 -2.1329 3.2784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:58 Heat of formation + Delta-G solvation = -31.577661 kcal Electronic energy + Delta-G solvation = -19712.289082 eV Core-core repulsion = 16648.839049 eV Total energy + Delta-G solvation = -3063.450033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37713 -38.55396 -36.46751 -34.00845 -33.07983 -32.36508 -30.44488 -28.60503 -27.36308 -27.24160 -26.09977 -22.33265 -22.21572 -20.16491 -19.77109 -17.62531 -16.94575 -16.46624 -15.73349 -15.15450 -15.04368 -14.53605 -14.12656 -13.75391 -13.62446 -13.24660 -12.90618 -12.65387 -12.46133 -12.33934 -12.01085 -11.95360 -11.85056 -11.72690 -11.42055 -11.28194 -11.08904 -10.66223 -10.51592 -10.40497 -10.34420 -9.94976 -9.10076 -8.66866 -8.34421 -7.65406 -6.65051 -6.37783 -4.90679 1.96282 2.17930 3.04415 3.11866 3.15255 3.53775 3.97361 4.25048 4.56206 4.74625 4.78139 4.82305 4.96857 5.34590 5.47225 5.51573 5.53391 5.60675 5.67740 5.72069 5.76692 5.81725 5.94046 6.02174 6.07569 6.26746 6.32007 6.34915 6.63730 6.69531 7.09672 7.17988 7.21544 7.31218 7.85823 7.91946 8.07286 8.27208 8.79410 9.30759 10.37349 10.58160 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040054 B = 0.004282 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.885202 B = 6537.672283 C = 6999.314635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 C -0.136 4.136 4 C -0.197 4.197 5 O -0.315 6.315 6 C 0.077 3.923 7 C -0.200 4.200 8 C -0.107 4.107 9 C 0.163 3.837 10 N -0.698 5.698 11 C 0.544 3.456 12 O -0.567 6.567 13 C -0.539 4.539 14 H 0.070 0.930 15 C 0.088 3.912 16 N -0.748 5.748 17 Si 0.912 3.088 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.151 4.151 22 C -0.131 4.131 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.391 0.609 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 12.655 3.054 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.073 3.927 3 C -0.193 4.193 4 C -0.254 4.254 5 O -0.230 6.230 6 C 0.032 3.968 7 C -0.218 4.218 8 C -0.128 4.128 9 C 0.063 3.937 10 N -0.340 5.340 11 C 0.353 3.647 12 O -0.451 6.451 13 C -0.574 4.574 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.375 5.375 17 Si 0.737 3.263 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.173 4.173 22 C -0.150 4.150 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.224 0.776 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.646 12.898 2.121 13.336 hybrid contribution -0.455 -1.072 0.469 1.255 sum 2.191 11.826 2.589 12.303 Atomic orbital electron populations 1.23006 0.95288 1.05555 1.02643 1.21613 0.93750 0.92548 0.84741 1.21758 1.01932 0.93084 1.02493 1.22842 1.02652 1.02812 0.97121 1.86039 1.67212 1.25596 1.44191 1.18730 0.98311 0.84440 0.95286 1.21867 1.02710 0.96806 1.00430 1.21552 1.00542 0.92388 0.98275 1.17996 0.94372 0.86208 0.95080 1.44090 1.67990 1.11119 1.10833 1.17035 0.79437 0.85246 0.83008 1.90593 1.58142 1.74710 1.21678 1.20070 1.42005 1.01077 0.94269 0.91187 1.25758 0.93810 0.99460 0.94435 1.70007 1.33050 1.35588 0.98889 0.86286 0.79731 0.81296 0.79026 1.19501 1.20242 1.18696 1.20587 1.00323 0.95619 1.00743 1.19963 1.03999 0.94768 0.96265 0.91866 0.91444 0.88708 0.91781 0.90896 0.91818 0.89668 0.91494 0.91632 0.83592 0.82970 0.77636 0.91660 0.86169 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.55 8.04 37.16 0.30 -2.25 16 2 C 0.11 1.43 1.11 -90.62 -0.10 1.33 16 3 C -0.14 -1.35 8.84 37.15 0.33 -1.03 16 4 C -0.20 -2.49 8.27 37.16 0.31 -2.18 16 5 O -0.31 -5.01 9.79 -19.45 -0.19 -5.20 16 6 C 0.08 1.36 6.15 -39.12 -0.24 1.12 16 7 C -0.20 -3.67 6.14 -39.45 -0.24 -3.92 16 8 C -0.11 -2.34 8.70 -39.36 -0.34 -2.68 16 9 C 0.16 3.49 6.42 -83.72 -0.54 2.95 16 10 N -0.70 -15.88 5.34 -12.40 -0.07 -15.95 16 11 C 0.54 15.03 7.37 -14.91 -0.11 14.92 16 12 O -0.57 -17.48 12.06 5.12 0.06 -17.42 16 13 C -0.54 -14.61 9.31 -37.52 -0.35 -14.96 16 14 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 15 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 16 N -0.75 -21.37 11.73 55.55 0.65 -20.72 16 17 Si 0.91 19.21 29.56 -169.99 -5.02 14.19 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.15 -2.72 9.94 -39.36 -0.39 -3.11 16 22 C -0.13 -2.24 9.98 -39.45 -0.39 -2.63 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.34 4.15 -51.93 -0.22 1.12 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.24 4.64 -51.93 -0.24 1.00 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.15 2.39 3.08 -52.49 -0.16 2.23 16 33 H 0.15 3.81 5.82 -52.48 -0.31 3.51 16 34 H 0.39 7.61 8.74 -40.82 -0.36 7.25 16 35 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 36 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -31.97 301.24 -6.53 -38.50 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -4.63 Total: 12.23 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.87 Total: -10.17 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.59 Total: -36.67 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.13 Total: -22.62 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.97 -6.53 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.920 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds