Wall clock time and date at job start Sun Mar 29 2020 23:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47736 * 2 1 4 4 C 1.53001 * 109.47015 * 120.00428 * 2 1 3 5 5 O 1.42905 * 109.46909 * 174.99827 * 4 2 1 6 6 C 1.35715 * 116.99787 * 179.97438 * 5 4 2 7 7 C 1.39010 * 119.90807 * 0.24938 * 6 5 4 8 8 C 1.37684 * 120.09833 * 180.21238 * 7 6 5 9 9 C 1.39803 * 119.90245 * 359.51115 * 8 7 6 10 10 C 1.47490 * 120.09492 * 180.27504 * 9 8 7 11 11 O 1.21627 * 120.00004 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00229 * 180.02562 * 10 9 8 13 13 C 1.36902 * 120.00440 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99706 * 359.97438 * 13 12 10 15 15 C 1.39017 * 120.00444 * 180.02562 * 13 12 10 16 16 N 1.31379 * 119.99604 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00318 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47467 * 59.99379 * 17 15 13 19 19 H 1.48503 * 109.47365 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46921 * 299.99735 * 17 15 13 21 21 C 1.39794 * 119.81143 * 0.26069 * 9 8 7 22 22 C 1.37684 * 119.90589 * 359.97438 * 21 9 8 23 23 H 1.09005 * 109.46816 * 300.00049 * 1 2 3 24 24 H 1.08998 * 109.46975 * 59.99336 * 1 2 3 25 25 H 1.08993 * 109.47389 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46816 * 239.99950 * 2 1 3 27 27 H 1.09006 * 109.46818 * 300.00448 * 3 2 1 28 28 H 1.08997 * 109.46673 * 60.00045 * 3 2 1 29 29 H 1.08997 * 109.47470 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47051 * 54.99791 * 4 2 1 31 31 H 1.08998 * 109.46887 * 294.99554 * 4 2 1 32 32 H 1.08004 * 119.95340 * 359.97438 * 7 6 5 33 33 H 1.08002 * 120.05316 * 179.79646 * 8 7 6 34 34 H 0.97004 * 120.00078 * 359.97438 * 12 10 9 35 35 H 0.97010 * 119.99901 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.05026 * 180.02562 * 21 9 8 37 37 H 1.08000 * 119.95455 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0797 -1.4417 2.2318 7 6 3.3243 -1.9442 3.2850 8 6 3.9450 -2.5677 4.3440 9 6 5.3363 -2.7042 4.3543 10 6 6.0051 -3.3769 5.4837 11 8 5.3461 -3.8141 6.4077 12 7 7.3466 -3.5070 5.4919 13 6 7.9674 -4.1318 6.5400 14 1 7.3821 -4.5200 7.3605 15 6 9.3511 -4.2655 6.5487 16 7 10.0629 -3.7928 5.5508 17 14 10.1980 -5.1186 7.9784 18 1 9.7020 -6.5142 8.0864 19 1 11.6651 -5.1316 7.7484 20 1 9.9003 -4.3888 9.2370 21 6 6.0918 -2.2017 3.2908 22 6 5.4634 -1.5752 2.2381 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6053 -1.7199 1.2950 31 1 1.7516 -0.1584 2.1369 32 1 2.2491 -1.8419 3.2744 33 1 3.3576 -2.9549 5.1635 34 1 7.8722 -3.1586 4.7548 35 1 11.0285 -3.8864 5.5567 36 1 7.1668 -2.3054 3.2946 37 1 6.0462 -1.1870 1.4159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082546434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:51 Heat of formation + Delta-G solvation = -68.746409 kcal Electronic energy + Delta-G solvation = -18824.809043 eV Core-core repulsion = 15759.747252 eV Total energy + Delta-G solvation = -3065.061791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06084 -38.52371 -36.85223 -35.26031 -34.04741 -31.52470 -30.63525 -29.65116 -27.45344 -26.77337 -25.13565 -22.53771 -22.35413 -20.36526 -19.46327 -18.36061 -17.80483 -16.62074 -16.16153 -15.57341 -14.89897 -14.56811 -14.45743 -14.11384 -13.74921 -13.58152 -13.43088 -13.14054 -13.00502 -12.54597 -12.44144 -12.18354 -11.89873 -11.56258 -11.38806 -11.33412 -11.11458 -11.03294 -10.64378 -10.53464 -10.44801 -10.23830 -9.58257 -8.74424 -8.48707 -8.07463 -7.85268 -6.52849 -3.86640 1.44648 1.68440 3.17838 3.18513 3.22262 3.26824 3.69401 4.11399 4.49255 4.52251 4.55356 4.79245 4.94051 5.03044 5.10395 5.16887 5.20379 5.30517 5.32069 5.37759 5.55085 5.62501 5.64738 5.71782 5.75606 5.88471 6.00804 6.03924 6.05278 6.32784 6.56334 6.71242 6.92407 6.99105 7.45720 7.56707 7.99146 8.53634 9.08879 9.45615 10.00863 10.64283 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.054323 B = 0.003337 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.308177 B = 8388.434314 C = 8804.017729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.062 3.938 5 O -0.315 6.315 6 C 0.125 3.875 7 C -0.216 4.216 8 C -0.038 4.038 9 C -0.131 4.131 10 C 0.470 3.530 11 O -0.600 6.600 12 N -0.545 5.545 13 C -0.296 4.296 14 H 0.107 0.893 15 C 0.023 3.977 16 N -0.892 5.892 17 Si 0.935 3.065 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.064 4.064 22 C -0.155 4.155 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.394 0.606 35 H 0.276 0.724 36 H 0.134 0.866 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 8.076 -11.930 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.013 4.013 5 O -0.229 6.229 6 C 0.080 3.920 7 C -0.234 4.234 8 C -0.058 4.058 9 C -0.134 4.134 10 C 0.259 3.741 11 O -0.488 6.488 12 N -0.180 5.180 13 C -0.426 4.426 14 H 0.124 0.876 15 C -0.180 4.180 16 N -0.532 5.532 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.084 4.084 22 C -0.173 4.173 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.152 0.848 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.265 7.860 -11.508 19.240 hybrid contribution 0.650 -0.260 0.347 0.782 sum -12.615 7.600 -11.161 18.478 Atomic orbital electron populations 1.21783 0.93943 1.02203 1.02417 1.21124 0.95694 0.97003 0.97539 1.21820 1.02091 0.94937 1.01586 1.22877 0.79167 1.00306 0.98944 1.85966 1.21257 1.73792 1.41847 1.19092 0.92251 0.93607 0.87088 1.21106 0.99655 1.06462 0.96208 1.21002 0.93660 0.94385 0.96718 1.20266 0.94198 1.02471 0.96512 1.17659 0.82856 0.86130 0.87463 1.90591 1.64591 1.55150 1.38463 1.41878 1.05033 1.49697 1.21359 1.19775 0.90040 1.32406 1.00336 0.87556 1.25364 0.96404 0.97659 0.98573 1.69589 1.07579 1.44933 1.31122 0.85843 0.77650 0.79766 0.80586 1.19695 1.20808 1.19689 1.21253 1.00124 0.94911 0.92097 1.20264 0.91176 1.05159 1.00749 0.92326 0.91816 0.92333 0.90123 0.92638 0.92716 0.91724 0.92078 0.92033 0.85730 0.84846 0.77158 0.91443 0.84805 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.10 -0.78 3.16 -90.62 -0.29 -1.06 16 3 C -0.15 -1.19 9.09 37.16 0.34 -0.85 16 4 C 0.06 0.63 4.11 37.16 0.15 0.78 16 5 O -0.31 -4.20 9.66 -18.85 -0.18 -4.38 16 6 C 0.13 1.90 6.70 -39.01 -0.26 1.64 16 7 C -0.22 -3.27 9.01 -39.50 -0.36 -3.63 16 8 C -0.04 -0.70 9.59 -39.20 -0.38 -1.07 16 9 C -0.13 -2.70 5.88 -104.96 -0.62 -3.32 16 10 C 0.47 11.94 7.71 -12.49 -0.10 11.85 16 11 O -0.60 -17.12 15.91 5.25 0.08 -17.04 16 12 N -0.55 -14.29 5.23 -11.94 -0.06 -14.35 16 13 C -0.30 -8.31 9.68 -15.00 -0.15 -8.46 16 14 H 0.11 3.10 7.15 -52.48 -0.38 2.73 16 15 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 16 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 17 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.06 -1.16 9.53 -39.20 -0.37 -1.53 16 22 C -0.15 -2.44 9.97 -39.50 -0.39 -2.83 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.06 0.58 7.64 -51.93 -0.40 0.18 16 31 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.12 1.53 6.28 -52.48 -0.33 1.20 16 33 H 0.13 2.44 7.64 -52.49 -0.40 2.04 16 34 H 0.39 9.72 5.92 -40.82 -0.24 9.48 16 35 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.13 2.33 6.39 -52.49 -0.34 2.00 16 37 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -31.11 315.57 -6.85 -37.96 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.98 Total: 9.07 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.17 Total: -8.54 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.66 Total: -37.60 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.10 Total: -21.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.11 -6.85 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082546434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.786 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds