Wall clock time and date at job start Mon Mar 30 2020 00:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 117.00077 * 2 1 4 4 C 1.38755 * 120.05301 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94011 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05511 * 359.74262 * 5 4 3 7 7 C 1.38244 * 120.11254 * 0.50994 * 6 5 4 8 8 C 1.50701 * 119.97083 * 179.76489 * 7 6 5 9 9 H 1.09002 * 109.47060 * 179.72740 * 8 7 6 10 10 C 1.53002 * 109.47419 * 299.72821 * 8 7 6 11 11 C 1.52997 * 109.47212 * 59.72685 * 8 7 6 12 12 C 1.50698 * 109.47721 * 174.99887 * 11 8 7 13 13 O 1.21301 * 119.99448 * 359.97438 * 12 11 8 14 14 N 1.34768 * 120.00550 * 180.02562 * 12 11 8 15 15 C 1.37098 * 119.99990 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00223 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99860 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47065 * 89.99856 * 19 17 15 21 21 H 1.48502 * 109.46784 * 209.99611 * 19 17 15 22 22 H 1.48501 * 109.47063 * 329.99489 * 19 17 15 23 23 C 1.38164 * 120.05507 * 359.49132 * 7 6 5 24 24 H 1.09007 * 109.46798 * 59.99727 * 1 2 3 25 25 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47112 * 299.99914 * 1 2 3 27 27 H 1.08003 * 120.02764 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.96727 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.93975 * 180.27889 * 6 5 4 30 30 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46986 * 300.00096 * 10 8 7 32 32 H 1.09002 * 109.47075 * 59.99368 * 10 8 7 33 33 H 1.09000 * 109.47325 * 294.99852 * 11 8 7 34 34 H 1.09008 * 109.47017 * 54.99761 * 11 8 7 35 35 H 0.97005 * 120.00103 * 359.97438 * 14 12 11 36 36 H 0.97000 * 120.00042 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.02839 * 180.27290 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0007 8 6 5.5608 2.5982 0.0012 9 1 5.9789 1.5915 0.0010 10 6 6.0318 3.3462 -1.2477 11 6 6.0309 3.3454 1.2508 12 6 7.5363 3.3201 1.3149 13 8 8.1708 2.7590 0.4466 14 7 8.1775 3.9199 2.3373 15 6 9.5470 3.8972 2.3952 16 1 10.1121 3.3984 1.6217 17 6 10.2082 4.5161 3.4491 18 7 9.5207 5.1235 4.3900 19 14 12.0743 4.4846 3.5284 20 1 12.6200 5.6684 2.8172 21 1 12.5099 4.5156 4.9478 22 1 12.5762 3.2447 2.8835 23 6 3.4311 1.2848 0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3204 0.0005 28 1 1.3340 4.5113 0.0019 29 1 3.7922 4.6381 0.0114 30 1 7.1202 3.4045 -1.2475 31 1 5.6969 2.8138 -2.1379 32 1 5.6136 4.3528 -1.2475 33 1 5.6865 4.3787 1.2073 34 1 5.6212 2.8629 2.1383 35 1 7.6700 4.3683 3.0319 36 1 9.9822 5.5558 5.1255 37 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084590834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:20 Heat of formation + Delta-G solvation = -66.020493 kcal Electronic energy + Delta-G solvation = -19073.941087 eV Core-core repulsion = 16008.997501 eV Total energy + Delta-G solvation = -3064.943586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23461 -38.64233 -37.54569 -34.59975 -33.60990 -31.22187 -30.80390 -29.23875 -27.50589 -27.37330 -24.65212 -22.96966 -22.55975 -20.26536 -18.93736 -17.82857 -17.53127 -16.29322 -16.04828 -15.84974 -15.73785 -14.74888 -14.44391 -14.05672 -13.94030 -13.63285 -13.36769 -13.05536 -12.71406 -12.41288 -12.23708 -11.97835 -11.62429 -11.45388 -11.25720 -11.11923 -11.04228 -10.64481 -10.52836 -10.37337 -10.32404 -10.18010 -9.46030 -8.76296 -8.30108 -8.15886 -7.93437 -6.39511 -3.80203 1.36433 1.48536 3.16778 3.19190 3.27729 3.33762 3.79528 3.95019 4.19731 4.70765 4.76850 4.93602 4.94961 5.01845 5.14594 5.24969 5.28835 5.40360 5.45363 5.50017 5.58626 5.72146 5.91948 6.05938 6.14271 6.23269 6.29715 6.33606 6.44086 6.52274 6.57701 6.74518 6.87041 6.97995 7.35749 7.57342 8.08623 8.63708 9.20024 9.57971 10.09282 10.78220 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.003512 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.799697 B = 7969.761221 C = 8013.120964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.219 4.219 5 C -0.081 4.081 6 C -0.150 4.150 7 C -0.027 4.027 8 C -0.033 4.033 9 H 0.086 0.914 10 C -0.144 4.144 11 C -0.123 4.123 12 C 0.442 3.558 13 O -0.593 6.593 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.149 4.149 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.393 0.607 36 H 0.271 0.729 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.884 -3.824 -6.513 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.238 4.238 5 C -0.099 4.099 6 C -0.168 4.168 7 C -0.027 4.027 8 C -0.052 4.052 9 H 0.104 0.896 10 C -0.201 4.201 11 C -0.163 4.163 12 C 0.228 3.772 13 O -0.479 6.479 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.756 3.244 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.167 4.167 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.081 0.919 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.302 -4.291 -6.907 19.118 hybrid contribution 0.197 0.504 0.668 0.859 sum -17.105 -3.788 -6.239 18.598 Atomic orbital electron populations 1.23010 0.78753 1.03663 1.01202 1.86072 1.21091 1.27218 1.88934 1.19003 0.92282 0.83976 0.96851 1.21138 0.99616 0.92515 1.10502 1.20894 0.94613 0.96778 0.97629 1.20988 0.93450 0.98499 1.03875 1.19908 0.96132 0.91928 0.94713 1.19862 0.88292 1.01505 0.95504 0.89602 1.21929 1.04201 0.98586 0.95433 1.21551 0.95234 1.01280 0.98260 1.19897 0.88717 0.84278 0.84262 1.90475 1.68285 1.48869 1.40280 1.41923 1.07388 1.48330 1.22217 1.19724 0.81602 1.32971 1.08691 0.87911 1.25266 1.00591 0.96635 0.95471 1.69614 1.36425 1.35989 1.12262 0.85872 0.82350 0.78858 0.77293 1.20429 1.20951 1.19414 1.20385 0.91110 0.98466 1.06785 0.92840 0.88461 0.92769 0.85941 0.86015 0.85714 0.89354 0.93593 0.93525 0.90368 0.90453 0.77408 0.91892 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.88 10.50 -19.46 -0.20 -4.09 16 3 C 0.12 1.62 6.69 -39.22 -0.26 1.35 16 4 C -0.22 -2.49 9.04 -39.43 -0.36 -2.85 16 5 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.15 -1.94 8.76 -39.56 -0.35 -2.29 16 7 C -0.03 -0.38 4.78 -104.65 -0.50 -0.88 16 8 C -0.03 -0.54 2.21 -91.77 -0.20 -0.74 16 9 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 10 C -0.14 -2.35 8.75 37.16 0.33 -2.03 16 11 C -0.12 -2.19 4.91 -27.89 -0.14 -2.33 16 12 C 0.44 10.36 7.50 -10.99 -0.08 10.28 16 13 O -0.59 -15.61 13.54 5.54 0.08 -15.54 16 14 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 15 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 19 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.15 -2.11 9.61 -39.44 -0.38 -2.49 16 24 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 27 H 0.12 1.08 6.30 -52.48 -0.33 0.75 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.50 7.16 -52.48 -0.38 1.13 16 30 H 0.09 1.72 5.95 -51.93 -0.31 1.41 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 33 H 0.08 1.26 7.55 -51.93 -0.39 0.87 16 34 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.13 1.79 7.94 -52.49 -0.42 1.37 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -31.17 311.69 -6.30 -37.47 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.93 Total: 9.91 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.59 Total: -10.14 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.67 Total: -38.45 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.13 Total: -19.62 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.17 -6.30 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084590834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.549 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds