Wall clock time and date at job start Mon Mar 30 2020 00:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 117.00077 * 2 1 4 4 C 1.38755 * 120.05301 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94011 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05511 * 359.74262 * 5 4 3 7 7 C 1.38244 * 120.11254 * 0.50994 * 6 5 4 8 8 C 1.50701 * 119.97083 * 179.76489 * 7 6 5 9 9 H 1.09002 * 109.47060 * 179.72740 * 8 7 6 10 10 C 1.53002 * 109.47419 * 299.72821 * 8 7 6 11 11 C 1.52997 * 109.47212 * 59.72685 * 8 7 6 12 12 C 1.50698 * 109.47721 * 174.99887 * 11 8 7 13 13 O 1.21301 * 119.99448 * 359.97438 * 12 11 8 14 14 N 1.34768 * 120.00550 * 180.02562 * 12 11 8 15 15 C 1.37098 * 119.99990 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00223 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99860 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47065 * 89.99856 * 19 17 15 21 21 H 1.48502 * 109.46784 * 209.99611 * 19 17 15 22 22 H 1.48501 * 109.47063 * 329.99489 * 19 17 15 23 23 C 1.38164 * 120.05507 * 359.49132 * 7 6 5 24 24 H 1.09007 * 109.46798 * 59.99727 * 1 2 3 25 25 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47112 * 299.99914 * 1 2 3 27 27 H 1.08003 * 120.02764 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.96727 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.93975 * 180.27889 * 6 5 4 30 30 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46986 * 300.00096 * 10 8 7 32 32 H 1.09002 * 109.47075 * 59.99368 * 10 8 7 33 33 H 1.09000 * 109.47325 * 294.99852 * 11 8 7 34 34 H 1.09008 * 109.47017 * 54.99761 * 11 8 7 35 35 H 0.97005 * 120.00103 * 359.97438 * 14 12 11 36 36 H 0.97000 * 120.00042 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.02839 * 180.27290 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0007 8 6 5.5608 2.5982 0.0012 9 1 5.9789 1.5915 0.0010 10 6 6.0318 3.3462 -1.2477 11 6 6.0309 3.3454 1.2508 12 6 7.5363 3.3201 1.3149 13 8 8.1708 2.7590 0.4466 14 7 8.1775 3.9199 2.3373 15 6 9.5470 3.8972 2.3952 16 1 10.1121 3.3984 1.6217 17 6 10.2082 4.5161 3.4491 18 7 9.5207 5.1235 4.3900 19 14 12.0743 4.4846 3.5284 20 1 12.6200 5.6684 2.8172 21 1 12.5099 4.5156 4.9478 22 1 12.5762 3.2447 2.8835 23 6 3.4311 1.2848 0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3204 0.0005 28 1 1.3340 4.5113 0.0019 29 1 3.7922 4.6381 0.0114 30 1 7.1202 3.4045 -1.2475 31 1 5.6969 2.8138 -2.1379 32 1 5.6136 4.3528 -1.2475 33 1 5.6865 4.3787 1.2073 34 1 5.6212 2.8629 2.1383 35 1 7.6700 4.3683 3.0319 36 1 9.9822 5.5558 5.1255 37 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084590834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:20 Heat of formation + Delta-G solvation = -85.452999 kcal Electronic energy + Delta-G solvation = -19074.783744 eV Core-core repulsion = 16008.997501 eV Total energy + Delta-G solvation = -3065.786243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20773 -40.27526 -38.71877 -36.23173 -35.26928 -33.26686 -31.75732 -30.33582 -28.97878 -28.10407 -26.56843 -24.18425 -23.50580 -21.57311 -20.61746 -19.78459 -18.58362 -17.64581 -17.16935 -16.93164 -16.60880 -16.48084 -16.04483 -15.78752 -15.41493 -14.67643 -14.47255 -14.39297 -14.05240 -13.72058 -13.49105 -13.28028 -13.06539 -12.87832 -12.70325 -12.41769 -12.24704 -12.16887 -12.11030 -11.78245 -11.71413 -11.56860 -11.42610 -10.24633 -9.98580 -9.74964 -9.10755 -8.45647 -5.94306 0.39127 0.53128 1.38271 1.41744 1.54690 2.07362 2.30277 2.39605 2.82093 3.21865 3.24606 3.83964 3.89395 4.01284 4.19186 4.24943 4.33911 4.40061 4.42424 4.48621 4.58925 4.67351 4.69612 4.75846 4.77807 4.93996 5.10385 5.11478 5.27559 5.36545 5.41298 5.47648 5.58369 5.75626 5.88736 6.01891 6.50474 6.60753 7.13515 7.58059 8.13380 8.71901 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.003512 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.799697 B = 7969.761221 C = 8013.120964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.116 3.884 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.158 4.158 7 C -0.036 4.036 8 C -0.026 4.026 9 H 0.063 0.937 10 C -0.139 4.139 11 C -0.110 4.110 12 C 0.440 3.560 13 O -0.625 6.625 14 N -0.575 5.575 15 C -0.334 4.334 16 H 0.080 0.920 17 C -0.014 4.014 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.171 4.171 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.947 -3.006 -6.377 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.094 4.094 6 C -0.176 4.176 7 C -0.036 4.036 8 C -0.045 4.045 9 H 0.081 0.919 10 C -0.196 4.196 11 C -0.150 4.150 12 C 0.229 3.771 13 O -0.513 6.513 14 N -0.211 5.211 15 C -0.464 4.464 16 H 0.098 0.902 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.190 4.190 24 H 0.085 0.915 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.393 -3.472 -6.767 20.831 hybrid contribution 0.709 0.188 0.584 0.938 sum -18.684 -3.284 -6.183 19.953 Atomic orbital electron populations 1.23337 0.76398 1.05453 1.02352 1.86048 1.23581 1.27068 1.88813 1.19111 0.92018 0.85061 0.96745 1.21494 1.01088 0.91773 1.08814 1.21260 0.94106 0.98048 0.95955 1.21152 0.94374 0.98121 1.03958 1.19620 0.94471 0.92823 0.96727 1.19709 0.90183 0.99904 0.94749 0.91896 1.21833 1.01726 0.99922 0.96097 1.21518 0.90619 1.03202 0.99693 1.20890 0.91042 0.82378 0.82812 1.90459 1.69835 1.49749 1.41237 1.42005 1.06837 1.49244 1.23035 1.19700 0.82965 1.34538 1.09183 0.90220 1.26049 1.04931 0.95707 0.94662 1.69676 1.38066 1.35980 1.12506 0.84937 0.76905 0.78753 0.77802 1.19556 1.19587 1.19778 1.20416 0.92194 0.98163 1.08195 0.91506 0.86593 0.91630 0.83025 0.82858 0.84786 0.92992 0.92394 0.91676 0.87951 0.89146 0.77040 0.91323 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.80 10.50 -92.53 -0.97 -8.77 16 3 C 0.12 2.85 6.69 22.51 0.15 3.00 16 4 C -0.21 -4.16 9.04 22.37 0.20 -3.96 16 5 C -0.08 -1.46 10.04 22.25 0.22 -1.23 16 6 C -0.16 -3.71 8.76 22.28 0.20 -3.51 16 7 C -0.04 -1.01 4.78 -19.88 -0.10 -1.11 16 8 C -0.03 -0.87 2.21 -11.54 -0.03 -0.90 16 9 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 10 C -0.14 -4.54 8.75 71.98 0.63 -3.91 16 11 C -0.11 -3.91 4.91 29.85 0.15 -3.76 16 12 C 0.44 21.18 7.50 87.66 0.66 21.84 16 13 O -0.63 -34.31 13.54 -3.09 -0.04 -34.35 16 14 N -0.57 -30.06 5.29 -306.98 -1.62 -31.68 16 15 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 16 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 17 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 18 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 19 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C -0.17 -4.83 9.61 22.36 0.21 -4.61 16 24 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 25 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 28 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.13 2.84 7.16 -2.91 -0.02 2.82 16 30 H 0.05 2.08 5.95 -2.39 -0.01 2.07 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.84 7.40 -2.39 -0.02 1.83 16 33 H 0.10 3.15 7.55 -2.39 -0.02 3.13 16 34 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 35 H 0.40 19.77 7.90 -92.70 -0.73 19.04 16 36 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.12 3.46 7.94 -2.91 -0.02 3.44 16 Total: -1.00 -68.50 311.69 4.72 -63.78 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.35 Total: 31.22 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.69 Total: -15.52 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.34 Total: -81.80 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.01 Total: -43.12 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.50 4.72 -63.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084590834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.672 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds