Wall clock time and date at job start Sun Mar 29 2020 23:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 H 1.08999 * 109.46791 * 174.08323 * 3 2 1 5 5 C 1.50706 * 109.47300 * 54.08790 * 3 2 1 6 6 H 1.07997 * 119.99646 * 239.99961 * 5 3 2 7 7 C 1.37876 * 119.99977 * 59.99917 * 5 3 2 8 8 N 1.31518 * 119.99962 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47548 * 90.00046 * 9 7 5 11 11 H 1.48502 * 109.46702 * 209.99831 * 9 7 5 12 12 H 1.48498 * 109.47013 * 329.99512 * 9 7 5 13 13 N 1.46895 * 109.47187 * 294.08661 * 3 2 1 14 14 C 1.46907 * 110.99779 * 275.74008 * 13 3 2 15 15 C 1.50702 * 109.47010 * 176.25954 * 14 13 3 16 16 C 1.38364 * 119.84834 * 90.00156 * 15 14 13 17 17 C 1.37940 * 120.15071 * 180.27570 * 16 15 14 18 18 C 1.39632 * 119.84566 * 359.49896 * 17 16 15 19 19 C 1.47731 * 120.14694 * 180.23283 * 18 17 16 20 20 O 1.21471 * 119.99985 * 180.27535 * 19 18 17 21 21 O 1.34712 * 120.00092 * 0.26969 * 19 18 17 22 22 C 1.39617 * 119.70082 * 0.50238 * 18 17 16 23 23 C 1.37946 * 119.85094 * 359.74886 * 22 18 17 24 24 H 1.09001 * 109.46786 * 178.55599 * 1 2 3 25 25 H 1.08995 * 109.46875 * 298.55735 * 1 2 3 26 26 H 1.09001 * 109.46604 * 58.55825 * 1 2 3 27 27 H 1.08993 * 109.47135 * 239.99586 * 2 1 3 28 28 H 1.09001 * 109.46838 * 119.99732 * 2 1 3 29 29 H 0.97004 * 119.99580 * 180.02562 * 8 7 5 30 30 H 1.00893 * 111.00051 * 39.69728 * 13 3 2 31 31 H 1.09000 * 109.46555 * 56.26545 * 14 13 3 32 32 H 1.08998 * 109.47556 * 296.26076 * 14 13 3 33 33 H 1.08000 * 119.92390 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.07785 * 179.72225 * 17 16 15 35 35 H 0.96705 * 116.99801 * 180.02562 * 21 19 18 36 36 H 1.08002 * 120.07482 * 179.73155 * 22 18 17 37 37 H 1.07997 * 119.92762 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4217 2.1939 1.1508 6 1 0.8149 3.0670 0.9617 7 6 1.6309 1.7667 2.4449 8 7 2.3695 0.7032 2.6750 9 14 0.8639 2.6977 3.8712 10 1 -0.4781 2.1343 4.1658 11 1 1.7298 2.5668 5.0705 12 1 0.7304 4.1323 3.5113 13 7 1.6703 2.0925 -1.2643 14 6 2.6517 1.7945 -2.3161 15 6 2.1928 2.4001 -3.6176 16 6 2.5723 3.6887 -3.9492 17 6 2.1511 4.2512 -5.1362 18 6 1.3486 3.5132 -6.0087 19 6 0.8979 4.1072 -7.2840 20 8 0.1958 3.4647 -8.0387 21 8 1.2657 5.3616 -7.6100 22 6 0.9693 2.2135 -5.6677 23 6 1.3933 1.6651 -4.4751 24 1 -0.3633 -1.0274 -0.0259 25 1 -0.3633 0.4912 0.9026 26 1 -0.3632 0.5361 -0.8768 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.5163 0.4024 3.5855 30 1 0.7408 1.8243 -1.5506 31 1 2.7447 0.7146 -2.4307 32 1 3.6187 2.2153 -2.0406 33 1 3.1963 4.2569 -3.2753 34 1 2.4443 5.2587 -5.3919 35 1 0.9459 5.7073 -8.4546 36 1 0.3452 1.6389 -6.3360 37 1 1.1004 0.6600 -4.2099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087846693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:58 Heat of formation + Delta-G solvation = -74.651778 kcal Electronic energy + Delta-G solvation = -19087.234108 eV Core-core repulsion = 16021.916241 eV Total energy + Delta-G solvation = -3065.317867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49859 -38.92892 -36.52735 -36.22216 -33.29916 -31.53158 -31.02315 -29.92700 -26.89964 -25.20852 -23.32784 -22.97502 -22.43757 -20.73708 -19.33656 -18.26901 -17.55642 -16.38967 -15.75931 -15.32903 -15.24815 -14.80738 -14.66330 -14.13304 -13.62083 -13.51624 -13.10631 -13.03860 -12.55973 -12.38553 -12.12673 -11.76166 -11.67653 -11.43234 -11.01796 -10.93839 -10.79236 -10.61831 -10.56008 -10.02574 -9.88575 -9.60154 -9.04185 -9.00438 -8.83163 -8.37730 -7.30302 -6.00572 -4.02227 0.64812 1.38006 2.46185 2.87108 3.30931 3.38088 3.42411 3.76292 4.42759 4.73995 4.89463 4.93460 5.05562 5.31462 5.35251 5.43369 5.50857 5.76841 5.85634 6.06166 6.15210 6.19223 6.28532 6.30325 6.33045 6.36091 6.52808 6.68850 6.84183 6.86604 7.20894 7.23016 7.46527 7.65126 7.72428 7.84960 8.22487 8.45577 8.55660 9.03291 9.61614 11.06506 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.003778 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.097566 B = 7409.285842 C = 7709.873316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.086 3.914 15 C -0.026 4.026 16 C -0.115 4.115 17 C -0.061 4.061 18 C -0.145 4.145 19 C 0.530 3.470 20 O -0.521 6.521 21 O -0.513 6.513 22 C -0.053 4.053 23 C -0.131 4.131 24 H 0.022 0.978 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.412 0.588 36 H 0.134 0.866 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 4.308 -15.710 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.043 4.043 15 C -0.026 4.026 16 C -0.133 4.133 17 C -0.079 4.079 18 C -0.146 4.146 19 C 0.375 3.625 20 O -0.411 6.411 21 O -0.324 6.324 22 C -0.072 4.072 23 C -0.149 4.149 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.270 0.730 36 H 0.152 0.848 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.210 4.483 -15.192 15.841 hybrid contribution -0.860 -0.329 0.067 0.923 sum -0.650 4.154 -15.125 15.698 Atomic orbital electron populations 1.21569 0.97621 0.98047 1.01300 1.22115 0.95089 1.01086 1.00269 1.19246 0.96218 0.88698 0.85119 0.94759 1.21040 1.30539 1.11580 0.89654 0.91992 1.24906 0.95524 0.95183 0.98709 1.69883 1.39188 1.24122 1.20380 0.86564 0.78980 0.80383 0.81893 1.20855 1.21418 1.19887 1.60991 1.03744 1.63149 1.02883 1.21049 0.97797 0.97207 0.88237 1.20465 0.93167 0.93787 0.95211 1.21123 1.00907 0.94974 0.96299 1.21436 0.94143 0.99421 0.92935 1.18951 1.05828 0.96109 0.93726 1.21015 0.76386 0.78889 0.86168 1.90870 1.36295 1.62089 1.51874 1.84579 1.72266 1.31096 1.44505 1.21173 0.96718 0.93034 0.96240 1.21079 0.99074 1.00787 0.93967 0.95858 0.91493 0.95187 0.97054 0.88869 0.93090 0.85313 0.94807 0.90425 0.84722 0.84700 0.73005 0.84846 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.39 37.16 0.35 -2.30 16 2 C -0.15 -3.28 5.50 -26.73 -0.15 -3.42 16 3 C 0.21 5.06 2.33 -68.87 -0.16 4.90 16 4 H 0.03 0.89 7.86 -51.93 -0.41 0.49 16 5 C -0.49 -12.84 7.35 -34.44 -0.25 -13.10 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -24.69 11.39 55.43 0.63 -24.06 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.46 6.24 -109.22 -0.68 -14.14 16 14 C 0.09 1.42 5.60 -4.97 -0.03 1.39 16 15 C -0.03 -0.36 5.36 -104.53 -0.56 -0.92 16 16 C -0.11 -1.49 9.68 -39.64 -0.38 -1.87 16 17 C -0.06 -0.72 9.62 -39.17 -0.38 -1.10 16 18 C -0.14 -1.82 5.87 -104.98 -0.62 -2.43 16 19 C 0.53 6.40 8.27 34.61 0.29 6.68 16 20 O -0.52 -7.56 17.13 -19.24 -0.33 -7.89 16 21 O -0.51 -4.51 12.68 -40.53 -0.51 -5.03 16 22 C -0.05 -0.67 9.60 -39.17 -0.38 -1.05 16 23 C -0.13 -1.70 9.68 -39.64 -0.38 -2.08 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.53 7.05 -51.93 -0.37 1.17 16 26 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 27 H 0.01 0.22 7.24 -51.93 -0.38 -0.15 16 28 H 0.09 2.37 6.25 -51.93 -0.32 2.04 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.33 6.35 6.55 -39.30 -0.26 6.10 16 31 H 0.03 0.55 7.17 -51.93 -0.37 0.18 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.14 1.34 7.61 -52.49 -0.40 0.94 16 35 H 0.41 1.69 9.11 45.56 0.42 2.10 16 36 H 0.13 1.57 7.65 -52.49 -0.40 1.16 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -29.62 313.14 -8.00 -37.62 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.06 Total: 6.72 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.74 Total: -13.87 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.05 Total: -38.20 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.84 Total: -12.92 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.62 -8.00 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087846693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.036 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds