Wall clock time and date at job start Mon Mar 30 2020 00:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47067 * 2 1 4 4 N 1.46500 * 109.47317 * 120.00005 * 2 1 3 5 5 C 1.34774 * 120.00119 * 155.00202 * 4 2 1 6 6 O 1.21282 * 120.00304 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00135 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47208 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96230 * 269.97915 * 8 7 5 10 10 C 1.38281 * 120.13505 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96534 * 89.99715 * 8 7 5 23 23 H 1.09001 * 109.46938 * 299.99816 * 1 2 3 24 24 H 1.08996 * 109.47069 * 59.99852 * 1 2 3 25 25 H 1.09000 * 109.46534 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47416 * 240.00400 * 2 1 3 27 27 H 1.09000 * 109.46676 * 59.99947 * 3 2 1 28 28 H 1.08998 * 109.47071 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47297 * 300.00008 * 3 2 1 30 30 H 0.97001 * 119.99420 * 335.00247 * 4 2 1 31 31 H 1.09002 * 109.46571 * 59.99894 * 7 5 4 32 32 H 1.08992 * 109.46782 * 300.00158 * 7 5 4 33 33 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 34 34 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.03256 * 180.31909 * 11 10 9 36 36 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.03547 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1944 6 8 3.9360 -1.1986 0.2027 7 6 3.7425 -1.9700 2.4247 8 6 5.1243 -2.5115 2.1631 9 6 5.2809 -3.7849 1.6460 10 6 6.5472 -4.2855 1.4051 11 6 7.6597 -3.5125 1.6743 12 6 7.5061 -2.2360 2.1987 13 8 8.5978 -1.4761 2.4699 14 6 9.8032 -2.0616 2.3218 15 1 9.8719 -3.0629 1.9231 16 6 10.9548 -1.3780 2.6813 17 7 10.8711 -0.1585 3.1674 18 14 12.6249 -2.1894 2.4768 19 1 13.1622 -1.8826 1.1268 20 1 13.5570 -1.6712 3.5101 21 1 12.4831 -3.6596 2.6307 22 6 6.2327 -1.7362 2.4402 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.4622 -0.7387 1.9894 31 1 3.0699 -2.7922 2.6691 32 1 3.7790 -1.2700 3.2593 33 1 4.4123 -4.3894 1.4299 34 1 6.6662 -5.2802 1.0017 35 1 8.6483 -3.9021 1.4811 36 1 11.6767 0.3196 3.4193 37 1 6.1098 -0.7424 2.8446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089584516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:58 Heat of formation + Delta-G solvation = -51.432340 kcal Electronic energy + Delta-G solvation = -19077.971175 eV Core-core repulsion = 16013.660178 eV Total energy + Delta-G solvation = -3064.310996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.84576 -38.76356 -36.61564 -35.75927 -32.47108 -32.12919 -31.11384 -29.10070 -27.40102 -26.93062 -25.17771 -22.15318 -21.50128 -20.76425 -20.15429 -17.60151 -17.00383 -16.85528 -16.04507 -15.35642 -14.91350 -14.55337 -14.33364 -14.09740 -13.76144 -13.50738 -13.37942 -12.99588 -12.68234 -12.51296 -12.35149 -12.22571 -11.80433 -11.56984 -11.42737 -11.21545 -11.10154 -10.76467 -10.71814 -10.55061 -10.39589 -9.63927 -9.26787 -9.08040 -8.77367 -7.98617 -7.14240 -6.37867 -3.96767 2.17229 2.46971 2.85221 3.16763 3.17774 3.22708 3.28569 4.02414 4.58885 4.68460 4.86674 4.98348 5.06042 5.17040 5.19262 5.32420 5.37890 5.52559 5.56588 5.59726 5.71024 5.74618 5.82533 5.95940 6.01088 6.15155 6.25233 6.41423 6.51846 6.73677 6.99534 7.14449 7.34558 7.44150 7.51144 7.55430 7.90841 8.07449 8.40884 9.07994 9.79620 10.80561 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031648 B = 0.003939 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.525890 B = 7107.363327 C = 7660.894948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.736 5.736 5 C 0.513 3.487 6 O -0.519 6.519 7 C -0.094 4.094 8 C -0.032 4.032 9 C -0.196 4.196 10 C -0.075 4.075 11 C -0.231 4.231 12 C 0.155 3.845 13 O -0.180 6.180 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.175 4.175 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.397 0.603 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.269 0.731 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.558 -1.833 -1.970 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.390 5.390 5 C 0.300 3.700 6 O -0.393 6.393 7 C -0.134 4.134 8 C -0.033 4.033 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.101 3.899 13 O -0.084 6.084 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.194 4.194 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.840 -1.370 -2.553 18.073 hybrid contribution 0.567 -0.408 0.231 0.736 sum -17.273 -1.778 -2.322 17.519 Atomic orbital electron populations 1.22067 0.94422 1.02422 1.02731 1.20884 0.93595 0.93125 0.89293 1.22197 1.02597 0.95789 1.01749 1.46165 1.18305 1.57971 1.16579 1.20770 0.80796 0.78377 0.90078 1.90753 1.55447 1.58228 1.34877 1.20598 0.95837 1.00704 0.96288 1.18667 0.91799 0.94016 0.98832 1.20347 0.96462 0.96313 1.08419 1.20674 0.92361 0.98280 0.98027 1.21168 0.99264 0.95992 1.08602 1.19275 0.88338 0.89930 0.92309 1.83976 1.12021 1.36811 1.75620 1.21318 0.80469 1.00956 1.43938 0.89144 1.25268 0.99111 0.95869 0.96306 1.70040 1.29538 1.10594 1.39871 0.85724 0.80357 0.79060 0.78343 1.19930 1.20311 1.19228 1.19946 0.89782 1.00479 1.09182 0.92161 0.91136 0.92091 0.89591 0.92602 0.91765 0.91888 0.76930 0.88471 0.88321 0.87975 0.87507 0.85645 0.92137 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.38 37.16 0.35 -0.70 16 2 C 0.14 1.36 3.18 -67.93 -0.22 1.14 16 3 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 4 N -0.74 -7.72 5.08 -53.80 -0.27 -7.99 16 5 C 0.51 7.59 7.79 -10.98 -0.09 7.51 16 6 O -0.52 -10.33 15.70 5.56 0.09 -10.25 16 7 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 8 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 9 C -0.20 -3.65 9.70 -39.53 -0.38 -4.04 16 10 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 11 C -0.23 -5.34 9.17 -39.40 -0.36 -5.70 16 12 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 13 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 14 C -0.39 -11.31 9.49 30.89 0.29 -11.02 16 15 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 18 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.40 2.84 8.60 -40.82 -0.35 2.49 16 31 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -34.91 319.82 -6.54 -41.44 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.09 Total: 4.73 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.81 Total: -18.18 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.49 Total: -33.26 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.91 -6.54 -41.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089584516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.990 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds