Wall clock time and date at job start Mon Mar 30 2020 00:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 N 1.46500 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00119 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.50699 * 109.47208 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96230 * 269.97915 * 8 7 5 10 10 C 1.38281 * 120.13505 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47010 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46908 * 119.99967 * 18 16 14 21 21 H 1.48504 * 109.47373 * 240.00300 * 18 16 14 22 22 C 1.38073 * 119.96534 * 89.99715 * 8 7 5 23 23 H 1.08998 * 109.46811 * 59.99957 * 1 2 3 24 24 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46803 * 299.99752 * 1 2 3 26 26 H 1.09002 * 109.46549 * 240.00258 * 2 1 3 27 27 H 1.08998 * 109.47227 * 120.00697 * 2 1 3 28 28 H 1.09008 * 109.46644 * 60.00251 * 3 2 1 29 29 H 1.08998 * 109.47635 * 300.00447 * 3 2 1 30 30 H 0.97001 * 119.99420 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46571 * 59.99894 * 7 5 4 32 32 H 1.08992 * 109.46782 * 300.00158 * 7 5 4 33 33 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 34 34 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 35 35 H 1.08006 * 120.03715 * 180.31908 * 11 10 9 36 36 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.03547 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5726 3.6600 0.0018 7 6 5.6860 2.6096 0.0013 8 6 6.1884 4.0304 0.0027 9 6 6.4191 4.6828 -1.1951 10 6 6.8806 5.9863 -1.1980 11 6 7.1063 6.6431 -0.0041 12 6 6.8810 5.9891 1.1999 13 8 7.1077 6.6301 2.3749 14 6 7.6647 7.8560 2.3060 15 1 7.8344 8.3187 1.3450 16 6 8.0193 8.5227 3.4689 17 7 7.8130 7.9589 4.6394 18 14 8.7916 10.2209 3.3733 19 1 8.9163 10.6286 1.9508 20 1 7.9340 11.1959 4.0939 21 1 10.1379 10.1884 3.9992 22 6 6.4182 4.6795 1.1995 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9562 0.8901 29 1 1.6767 1.9564 -0.8899 30 1 3.9900 0.6024 0.0006 31 1 6.0493 2.0962 -0.8890 32 1 6.0492 2.0953 0.8910 33 1 6.2385 4.1730 -2.1299 34 1 7.0602 6.4928 -2.1347 35 1 7.4618 7.6630 -0.0069 36 1 8.0615 8.4251 5.4528 37 1 6.2385 4.1694 2.1343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089590427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:00 Heat of formation + Delta-G solvation = -54.650793 kcal Electronic energy + Delta-G solvation = -18783.570794 eV Core-core repulsion = 15719.120236 eV Total energy + Delta-G solvation = -3064.450559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76130 -38.72478 -36.54597 -35.72188 -32.84041 -32.28039 -31.78324 -29.15813 -27.60557 -25.75435 -25.06602 -21.96330 -21.60180 -21.13658 -20.03546 -17.62155 -17.00014 -16.74786 -15.98004 -15.94758 -15.12951 -14.81440 -14.33780 -14.17427 -13.88129 -13.42438 -13.41413 -13.07417 -12.79352 -12.54603 -12.38751 -12.21713 -11.77059 -11.47608 -11.42678 -11.22196 -11.15500 -10.78389 -10.70393 -10.54796 -10.38148 -9.67739 -9.26550 -9.07187 -8.77845 -7.98895 -7.14336 -6.38062 -3.96848 2.16895 2.46749 2.84143 3.16002 3.17913 3.23656 3.28102 4.02260 4.56097 4.61956 4.67539 4.91972 4.97332 5.16590 5.18154 5.29919 5.35080 5.36338 5.52186 5.57023 5.72261 5.73804 5.82090 5.84327 5.93092 6.00768 6.25138 6.41253 6.42868 6.73455 6.99393 7.14645 7.34379 7.44047 7.50587 7.52720 7.90652 8.07431 8.38538 9.07944 9.79610 10.80467 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032301 B = 0.003567 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.630698 B = 7847.484697 C = 8347.907833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.741 5.741 5 C 0.512 3.488 6 O -0.519 6.519 7 C -0.094 4.094 8 C -0.033 4.033 9 C -0.196 4.196 10 C -0.075 4.075 11 C -0.231 4.231 12 C 0.155 3.845 13 O -0.181 6.181 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.174 4.174 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.268 0.732 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -15.111 -9.785 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.395 5.395 5 C 0.298 3.702 6 O -0.393 6.393 7 C -0.134 4.134 8 C -0.034 4.034 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.102 3.898 13 O -0.084 6.084 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.194 4.194 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.798 -14.313 -9.297 18.765 hybrid contribution 0.566 0.467 -0.076 0.738 sum -7.232 -13.847 -9.373 18.218 Atomic orbital electron populations 1.21684 0.94674 1.02006 1.02432 1.21732 0.96923 0.96038 1.02593 1.21358 0.80051 0.96795 1.02441 1.46061 1.07077 1.08777 1.77614 1.20782 0.90237 0.83385 0.75785 1.90760 1.70217 1.31148 1.47204 1.20591 0.91386 0.96892 1.04496 1.18670 0.98399 0.93192 0.93123 1.20350 1.09060 0.96081 0.96041 1.20675 0.97621 0.94256 0.96793 1.21175 1.10162 1.01557 0.92134 1.19275 0.92719 0.91289 0.86567 1.83977 1.69520 1.30222 1.24727 1.21367 1.39754 0.90797 0.94681 0.89088 1.25273 0.97228 0.99886 0.94209 1.70050 1.44711 1.37876 0.97403 0.85655 0.78641 0.80393 0.78765 1.19134 1.20205 1.20198 1.19948 1.08742 0.93492 0.97187 0.92370 0.92290 0.92274 0.91421 0.91321 0.91582 0.91701 0.76830 0.88429 0.88273 0.87961 0.87493 0.85622 0.92186 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.90 6.05 -26.73 -0.16 -1.07 16 3 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 4 N -0.74 -7.86 5.56 -60.29 -0.33 -8.19 16 5 C 0.51 7.68 7.82 -10.98 -0.09 7.60 16 6 O -0.52 -10.54 16.03 5.56 0.09 -10.46 16 7 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 8 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 9 C -0.20 -3.66 9.70 -39.53 -0.38 -4.04 16 10 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 11 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 12 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 13 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 14 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 15 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -26.04 13.67 55.48 0.76 -25.28 16 18 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.40 2.82 8.47 -40.82 -0.35 2.48 16 31 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 37 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -35.21 320.69 -6.91 -42.12 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.12 Total: 3.94 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.11 Total: -17.68 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.42 Total: -33.47 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.21 -6.91 -42.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089590427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.529 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds