Wall clock time and date at job start Sun Mar 29 2020 23:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 N 1.46501 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99970 * 84.69765 * 4 3 2 6 6 H 1.07997 * 120.00170 * 320.81158 * 5 4 3 7 7 C 1.38817 * 119.99798 * 140.81477 * 5 4 3 8 8 N 1.31614 * 120.00275 * 340.10578 * 7 5 4 9 9 Si 1.86803 * 119.99691 * 160.10928 * 7 5 4 10 10 H 1.48489 * 109.47427 * 59.99458 * 9 7 5 11 11 H 1.48494 * 109.46893 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46705 * 299.99364 * 9 7 5 13 13 C 1.46498 * 119.99939 * 264.69649 * 4 3 2 14 14 C 1.50694 * 109.47098 * 90.00372 * 13 4 3 15 15 C 1.38285 * 119.98227 * 259.72300 * 14 13 4 16 16 C 1.38211 * 120.14122 * 179.67973 * 15 14 13 17 17 C 1.38277 * 120.14531 * 0.64824 * 16 15 14 18 18 C 1.38500 * 120.02868 * 359.64092 * 17 16 15 19 19 C 1.38505 * 119.99134 * 79.99898 * 14 13 4 20 20 O 1.36502 * 131.53935 * 0.02562 * 19 14 13 21 21 C 1.43984 * 105.48549 * 162.67981 * 20 19 14 22 22 O 1.36496 * 131.54076 * 180.02562 * 18 17 16 23 23 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47318 * 300.00242 * 1 2 3 25 25 H 1.08997 * 109.46941 * 60.00011 * 1 2 3 26 26 H 1.08996 * 109.47318 * 239.99758 * 2 1 3 27 27 H 1.09009 * 109.47103 * 119.99597 * 2 1 3 28 28 H 1.08996 * 109.47211 * 59.99693 * 3 2 1 29 29 H 1.09003 * 109.47025 * 299.99419 * 3 2 1 30 30 H 0.97001 * 120.00186 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46870 * 209.99831 * 13 4 3 32 32 H 1.08996 * 109.47293 * 329.99865 * 13 4 3 33 33 H 1.07997 * 119.93034 * 0.02562 * 15 14 13 34 34 H 1.08003 * 119.92779 * 180.28609 * 16 15 14 35 35 H 1.08000 * 119.98951 * 179.65664 * 17 16 15 36 36 H 1.08998 * 110.57401 * 268.56183 * 21 20 19 37 37 H 1.09007 * 110.69033 * 145.75342 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.3327 -1.1799 6 1 3.8327 0.6674 -1.9519 7 6 5.3443 2.0765 -1.3843 8 7 5.5745 3.1479 -0.6553 9 14 6.5706 1.5568 -2.6941 10 1 5.9056 1.5543 -4.0218 11 1 7.7093 2.5098 -2.7121 12 1 7.0723 0.1928 -2.3891 13 6 4.2370 1.5599 1.2642 14 6 4.4879 0.1855 1.8289 15 6 3.6828 -0.3032 2.8414 16 6 3.9059 -1.5659 3.3572 17 6 4.9435 -2.3407 2.8724 18 6 5.7577 -1.8554 1.8626 19 6 5.5285 -0.5854 1.3377 20 8 6.4553 -0.3414 0.3657 21 6 7.5027 -1.3052 0.5827 22 8 6.8279 -2.4065 1.2191 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 6.3808 3.6679 -0.7984 31 1 5.1894 2.0595 1.0872 32 1 3.6476 2.1419 1.9727 33 1 2.8744 0.3009 3.2261 34 1 3.2720 -1.9459 4.1448 35 1 5.1190 -3.3248 3.2811 36 1 8.2703 -0.8955 1.2392 37 1 7.9391 -1.6197 -0.3654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:17 Heat of formation + Delta-G solvation = -35.817663 kcal Electronic energy + Delta-G solvation = -20879.175804 eV Core-core repulsion = 17815.541911 eV Total energy + Delta-G solvation = -3063.633893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.92062 -39.10583 -37.58525 -36.95258 -34.59813 -33.07740 -31.44682 -30.70373 -27.36494 -27.26172 -26.62072 -24.01336 -23.62902 -22.23800 -21.73558 -18.89941 -18.76309 -18.26503 -17.85542 -17.08218 -16.74862 -15.94626 -15.62622 -15.32798 -15.17453 -14.81425 -14.65820 -14.49241 -13.87012 -13.76027 -13.55120 -13.29621 -13.21590 -12.80416 -12.69473 -12.49548 -12.44482 -12.20129 -11.90490 -11.79375 -11.68401 -11.67595 -11.25208 -10.45146 -9.44631 -8.85560 -8.49676 -7.78861 -5.41631 0.37151 0.47511 1.39675 1.43647 1.51116 2.01892 2.52416 2.75099 2.80989 3.33948 3.70797 3.82794 3.86496 4.01795 4.26027 4.30081 4.33467 4.41349 4.51068 4.54342 4.66425 4.74754 4.84234 4.88550 5.00493 5.20775 5.27932 5.29850 5.36456 5.47370 5.54441 5.55958 5.67603 5.72750 5.76394 5.83882 6.38056 6.52302 7.22678 7.90443 8.42018 9.16577 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.011915 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.544968 B = 2349.349307 C = 3783.507392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.147 3.853 4 N -0.589 5.589 5 C -0.253 4.253 6 H 0.035 0.965 7 C -0.005 4.005 8 N -0.912 5.912 9 Si 0.936 3.064 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.274 1.274 13 C 0.185 3.815 14 C -0.084 4.084 15 C -0.110 4.110 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.002 4.002 19 C 0.027 3.973 20 O -0.312 6.312 21 C 0.198 3.802 22 O -0.325 6.325 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.249 0.751 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.095 0.905 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -9.058 8.739 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.022 3.978 4 N -0.309 5.309 5 C -0.383 4.383 6 H 0.052 0.948 7 C -0.203 4.203 8 N -0.556 5.556 9 Si 0.765 3.235 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.200 1.200 13 C 0.059 3.941 14 C -0.087 4.087 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.046 4.046 19 C -0.018 4.018 20 O -0.228 6.228 21 C 0.087 3.913 22 O -0.242 6.242 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.166 0.834 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.112 0.888 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.815 -8.945 8.497 12.654 hybrid contribution 1.353 -0.010 -1.303 1.879 sum -1.462 -8.955 7.193 11.579 Atomic orbital electron populations 1.21644 0.94168 1.01738 1.01952 1.21954 0.96312 0.98679 1.00170 1.21027 0.83337 0.94612 0.98808 1.43855 1.00638 1.84819 1.01564 1.18777 1.07537 1.17535 0.94478 0.94768 1.25482 1.01382 0.94220 0.99262 1.70052 1.26605 1.15382 1.43572 0.85846 0.79740 0.78133 0.79793 1.20968 1.21809 1.19982 1.19734 0.98683 0.89719 0.85999 1.20274 0.93264 0.99407 0.95760 1.21092 0.98966 0.96946 0.95916 1.21233 0.96873 0.93212 1.00829 1.20335 0.95866 1.02351 0.94810 1.20255 0.93741 0.92100 0.98502 1.19930 0.95635 0.95021 0.91222 1.87612 1.31287 1.55271 1.48618 1.25859 0.89419 0.76512 0.99546 1.87217 1.39016 1.32704 1.65225 0.92223 0.91599 0.93185 0.95608 0.92664 0.92956 0.95337 0.94133 0.91762 0.93489 0.83379 0.80889 0.82852 0.88757 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.13 -4.76 6.23 30.59 0.19 -4.57 16 3 C 0.15 6.19 5.72 86.38 0.49 6.69 16 4 N -0.59 -29.61 2.41 -706.36 -1.70 -31.31 16 5 C -0.25 -14.29 9.41 84.03 0.79 -13.50 16 6 H 0.03 2.03 7.90 -2.91 -0.02 2.01 16 7 C -0.01 -0.30 4.80 84.86 0.41 0.10 16 8 N -0.91 -53.88 11.49 21.65 0.25 -53.63 16 9 Si 0.94 46.43 29.50 68.60 2.02 48.45 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 13 C 0.18 8.75 5.46 85.63 0.47 9.22 16 14 C -0.08 -3.43 5.32 -19.79 -0.11 -3.54 16 15 C -0.11 -3.44 8.63 22.27 0.19 -3.25 16 16 C -0.10 -2.64 10.04 22.27 0.22 -2.41 16 17 C -0.11 -3.32 10.06 22.34 0.22 -3.09 16 18 C 0.00 -0.08 7.15 22.59 0.16 0.08 16 19 C 0.03 1.16 6.85 22.59 0.15 1.32 16 20 O -0.31 -14.48 11.09 -76.07 -0.84 -15.32 16 21 C 0.20 6.99 8.89 113.37 1.01 7.99 16 22 O -0.32 -11.87 11.40 -76.00 -0.87 -12.73 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.99 6.92 -2.38 -0.02 1.97 16 28 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 29 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.06 3.59 5.58 -2.39 -0.01 3.57 16 32 H 0.05 2.04 7.71 -2.39 -0.02 2.02 16 33 H 0.15 3.86 8.03 -2.91 -0.02 3.84 16 34 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.14 4.14 8.14 -2.38 -0.02 4.12 16 Total: -1.00 -68.03 311.01 4.84 -63.19 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.05 Total: 9.34 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.92 Total: -7.98 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.45 Total: -84.94 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.71 Total: -28.06 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.02 Total: 48.45 kcal Total: -68.03 4.84 -63.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.372 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds