Wall clock time and date at job start Sun Mar 29 2020 23:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47409 * 2 1 4 4 H 1.09000 * 109.47007 * 54.99835 * 3 2 1 5 5 O 1.42902 * 109.46888 * 294.99827 * 3 2 1 6 6 C 1.35906 * 116.99723 * 93.96304 * 5 3 2 7 7 C 1.38749 * 120.05795 * 2.68815 * 6 5 3 8 8 C 1.38124 * 119.94489 * 180.02562 * 7 6 5 9 9 C 1.38285 * 120.05689 * 359.97423 * 8 7 6 10 10 C 1.38243 * 120.11110 * 0.04557 * 9 8 7 11 11 C 1.50694 * 119.97132 * 179.97438 * 10 9 8 12 12 C 1.38174 * 120.05491 * 359.68169 * 10 9 8 13 13 C 1.50698 * 109.47423 * 174.99989 * 3 2 1 14 14 O 1.21293 * 120.00141 * 114.99820 * 13 3 2 15 15 N 1.34775 * 119.99980 * 295.00292 * 13 3 2 16 16 C 1.37100 * 120.00123 * 180.02562 * 15 13 3 17 17 H 1.07995 * 119.99731 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99884 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99599 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99870 * 20 18 16 22 22 H 1.48503 * 109.47185 * 209.99553 * 20 18 16 23 23 H 1.48499 * 109.47638 * 329.99735 * 20 18 16 24 24 H 1.08994 * 109.46838 * 60.00375 * 1 2 3 25 25 H 1.09000 * 109.47067 * 300.00180 * 1 2 3 26 26 H 1.09003 * 109.46972 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47015 * 120.00160 * 2 1 3 28 28 H 1.09000 * 109.47067 * 239.99820 * 2 1 3 29 29 H 1.08002 * 120.02685 * 0.02562 * 7 6 5 30 30 H 1.08004 * 119.97054 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.94378 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47115 * 90.00899 * 11 10 9 33 33 H 1.09002 * 109.47328 * 209.99809 * 11 10 9 34 34 H 1.08995 * 109.47310 * 330.00280 * 11 10 9 35 35 H 1.08001 * 120.02633 * 180.29306 * 12 10 9 36 36 H 0.97001 * 120.00257 * 359.97438 * 15 13 3 37 37 H 0.97009 * 119.99802 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0813 -1.2211 6 6 0.5040 2.7926 -1.2125 7 6 -0.2243 2.9204 -0.0385 8 6 -1.4012 3.6434 -0.0325 9 6 -1.8535 4.2400 -1.1951 10 6 -1.1299 4.1138 -2.3663 11 6 -1.6259 4.7648 -3.6316 12 6 0.0510 3.3964 -2.3762 13 6 3.5419 1.4443 0.1238 14 8 4.2251 1.8610 -0.7876 15 7 4.1260 0.9827 1.2473 16 6 5.4924 0.9848 1.3602 17 1 6.1006 1.3560 0.5487 18 6 6.0945 0.5094 2.5187 19 7 5.3543 0.0583 3.5063 20 14 7.9562 0.5117 2.6722 21 1 8.4024 1.7981 3.2649 22 1 8.3821 -0.6104 3.5467 23 1 8.5640 0.3492 1.3271 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.1287 2.4550 0.8700 30 1 -1.9683 3.7435 0.8813 31 1 -2.7737 4.8053 -1.1883 32 1 -1.2203 5.7740 -3.7041 33 1 -1.3014 4.1802 -4.4924 34 1 -2.7148 4.8112 -3.6136 35 1 0.6183 3.3020 -3.2903 36 1 3.5797 0.6497 1.9764 37 1 5.7747 -0.2732 4.3153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096454254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:02 Heat of formation + Delta-G solvation = -58.905036 kcal Electronic energy + Delta-G solvation = -19610.130779 eV Core-core repulsion = 16545.495743 eV Total energy + Delta-G solvation = -3064.635037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34669 -38.47002 -37.05649 -34.01360 -33.40128 -32.46544 -31.19768 -30.06489 -27.33430 -26.95505 -24.59888 -22.45872 -22.23533 -20.91163 -19.15021 -18.10898 -17.87472 -16.24110 -15.83525 -15.54496 -15.21723 -14.58556 -14.34950 -13.91010 -13.76569 -13.70704 -13.25588 -13.07271 -12.99029 -12.65280 -12.22843 -11.84103 -11.71006 -11.63145 -11.50894 -11.44240 -11.12272 -11.01212 -10.62138 -10.42737 -10.29686 -10.17782 -9.58410 -8.71221 -8.44581 -8.05846 -7.89915 -6.48932 -3.90328 1.39797 1.58055 3.13932 3.22817 3.26414 3.38125 3.73708 3.84981 4.15739 4.77458 4.83402 4.94493 4.99277 5.06372 5.18018 5.27551 5.32294 5.42782 5.46675 5.52502 5.56759 5.62486 5.74686 5.85809 5.92182 6.05868 6.14121 6.19527 6.25201 6.41439 6.50208 6.54135 6.64370 6.90169 7.49105 7.68106 7.97357 8.51546 9.09443 9.42051 9.92964 10.68408 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.004290 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.545642 B = 6524.795578 C = 6797.875838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.088 0.912 5 O -0.278 6.278 6 C 0.148 3.852 7 C -0.220 4.220 8 C -0.076 4.076 9 C -0.170 4.170 10 C -0.051 4.051 11 C -0.113 4.113 12 C -0.159 4.159 13 C 0.441 3.559 14 O -0.574 6.574 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.899 5.899 20 Si 0.932 3.068 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.393 0.607 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.163 3.864 -5.328 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.014 3.986 4 H 0.106 0.894 5 O -0.190 6.190 6 C 0.101 3.899 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.188 4.188 10 C -0.051 4.051 11 C -0.169 4.169 12 C -0.178 4.178 13 C 0.225 3.775 14 O -0.457 6.457 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.540 5.540 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.227 0.773 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.485 4.021 -5.922 16.157 hybrid contribution 0.531 -0.286 0.962 1.135 sum -13.954 3.735 -4.960 15.273 Atomic orbital electron populations 1.21951 0.95324 1.01882 1.01984 1.22005 0.96292 0.95139 1.04231 1.22371 0.95894 0.93811 0.86527 0.89423 1.86240 1.35842 1.62186 1.34735 1.19137 0.85864 0.90942 0.93947 1.21391 0.98246 1.06088 0.98084 1.20868 0.95137 0.95491 0.97930 1.20834 1.01309 1.04003 0.92695 1.19645 0.93659 0.96224 0.95563 1.20782 1.01067 1.00507 0.94574 1.20282 0.97809 1.02462 0.97265 1.19451 0.87516 0.85541 0.84961 1.90558 1.64129 1.51174 1.39876 1.41745 1.07756 1.54929 1.14645 1.19731 0.81312 1.39601 1.02435 0.87724 1.25276 1.00764 0.96592 0.95066 1.69607 1.36283 1.41830 1.06255 0.85822 0.81913 0.77862 0.78517 1.20292 1.20821 1.19294 0.92396 0.92484 0.92408 0.89579 0.90421 0.84968 0.86060 0.86381 0.91056 0.91432 0.91550 0.85332 0.77313 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.45 37.16 0.31 -1.72 16 2 C -0.14 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.07 1.41 2.57 -27.88 -0.07 1.34 16 4 H 0.09 1.50 5.37 -51.93 -0.28 1.22 16 5 O -0.28 -5.50 9.21 -39.30 -0.36 -5.86 16 6 C 0.15 2.44 5.31 -39.22 -0.21 2.23 16 7 C -0.22 -3.15 7.16 -39.43 -0.28 -3.43 16 8 C -0.08 -0.93 10.04 -39.61 -0.40 -1.32 16 9 C -0.17 -1.97 9.70 -39.56 -0.38 -2.36 16 10 C -0.05 -0.62 5.88 -104.65 -0.62 -1.24 16 11 C -0.11 -1.02 10.01 36.00 0.36 -0.65 16 12 C -0.16 -2.36 9.64 -39.43 -0.38 -2.74 16 13 C 0.44 10.83 7.13 -10.99 -0.08 10.75 16 14 O -0.57 -16.53 16.08 -14.31 -0.23 -16.76 16 15 N -0.55 -14.01 5.19 -10.97 -0.06 -14.06 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 20 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H 0.06 0.80 6.26 -51.93 -0.33 0.48 16 25 H 0.06 0.68 6.81 -51.93 -0.35 0.33 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.37 7.77 -51.93 -0.40 0.96 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.13 1.80 4.56 -52.49 -0.24 1.56 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.39 9.34 7.60 -40.82 -0.31 9.03 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -31.67 309.71 -7.21 -38.89 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.80 Total: 10.07 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.13 Total: -9.49 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.67 Total: -37.31 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.59 Total: -22.62 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.67 -7.21 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096454254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.020 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds