Wall clock time and date at job start Sun Mar 29 2020 23:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38272 * 119.94294 * 269.73050 * 17 16 14 19 19 C 1.38142 * 120.05208 * 179.72650 * 18 17 16 20 20 C 1.38734 * 119.94569 * 0.56064 * 19 18 17 21 21 O 1.35898 * 120.05599 * 179.68351 * 20 19 18 22 22 C 1.38733 * 119.88786 * 359.70978 * 20 19 18 23 23 C 1.38143 * 119.94448 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 31 31 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 32 32 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 33 33 H 1.07999 * 119.97305 * 359.97351 * 18 17 16 34 34 H 1.08000 * 120.02782 * 180.24965 * 19 18 17 35 35 H 0.96706 * 114.00223 * 270.02875 * 21 20 19 36 36 H 1.08000 * 120.02638 * 179.97438 * 22 20 19 37 37 H 1.07995 * 119.97360 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4451 3.1019 -2.8740 19 6 -3.7278 3.5993 -2.7492 20 6 -3.9275 4.8905 -2.2829 21 8 -5.1882 5.3844 -2.1654 22 6 -2.8382 5.6770 -1.9371 23 6 -1.5577 5.1726 -2.0575 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.8769 0.4828 2.1133 30 1 2.2720 2.1231 -1.9978 31 1 0.7280 4.1540 -2.8668 32 1 0.0680 2.6143 -3.4687 33 1 -2.2888 2.0986 -3.2418 34 1 -4.5742 2.9853 -3.0193 35 1 -5.5106 5.8325 -2.9593 36 1 -2.9911 6.6826 -1.5742 37 1 -0.7094 5.7845 -1.7889 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:13 Heat of formation + Delta-G solvation = -59.641809 kcal Electronic energy + Delta-G solvation = -19564.126797 eV Core-core repulsion = 16499.459812 eV Total energy + Delta-G solvation = -3064.666986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99619 -38.98744 -36.89592 -35.25485 -32.49191 -32.06845 -31.15801 -31.00311 -27.82524 -26.48916 -22.83505 -22.75775 -21.94457 -20.52703 -19.54299 -18.48583 -17.29950 -16.13067 -15.95839 -15.86442 -15.54662 -15.15207 -14.62290 -14.18999 -13.75733 -13.49193 -13.32521 -13.03245 -12.71224 -12.21741 -12.04572 -11.91457 -11.85557 -11.55246 -11.37755 -11.04446 -10.88088 -10.61683 -10.50713 -9.92282 -9.55799 -9.24046 -9.13695 -8.97679 -8.75420 -8.43977 -8.04398 -6.21577 -4.23919 1.20025 1.36737 3.23001 3.27420 3.35681 3.41275 3.53936 4.06609 4.20457 4.31685 4.76699 4.81570 4.95720 5.12219 5.31028 5.35337 5.48453 5.57007 5.65143 5.84922 5.97613 5.99949 6.03311 6.18998 6.27034 6.39047 6.60235 6.66021 6.71042 6.79067 6.86097 6.97070 7.28198 7.32053 7.52884 7.55063 8.16258 8.54283 8.76035 8.97960 9.39845 10.90501 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036339 B = 0.004406 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.327857 B = 6353.511871 C = 6537.130635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.541 6.541 16 C -0.107 4.107 17 C -0.061 4.061 18 C -0.090 4.090 19 C -0.144 4.144 20 C 0.095 3.905 21 O -0.501 6.501 22 C -0.144 4.144 23 C -0.089 4.089 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.385 0.615 36 H 0.126 0.874 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 6.313 -11.518 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.420 6.420 16 C -0.148 4.148 17 C -0.062 4.062 18 C -0.108 4.108 19 C -0.163 4.163 20 C 0.050 3.950 21 O -0.310 6.310 22 C -0.162 4.162 23 C -0.107 4.107 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.144 0.856 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.008 5.994 -10.143 19.080 hybrid contribution -0.090 -0.351 -0.003 0.362 sum -15.098 5.643 -10.146 19.045 Atomic orbital electron populations 1.21870 0.96932 0.98938 1.02290 1.22282 0.94337 1.00020 1.01033 1.19129 0.95527 0.88466 0.82981 0.93392 1.21062 0.88672 1.39750 1.07815 0.90215 1.24834 0.94855 0.95148 0.97675 1.69867 1.08693 1.44564 1.29832 0.86904 0.80984 0.79952 0.80905 1.20248 1.22172 1.18478 1.46171 1.14873 1.56131 1.17935 1.20282 0.82568 0.79364 0.89055 1.90700 1.51351 1.59431 1.40470 1.20742 0.94539 1.01654 0.97823 1.19382 0.94222 0.93961 0.98587 1.20868 0.91564 0.99202 0.99200 1.21319 0.97539 0.95835 1.01559 1.18453 0.83825 0.92565 1.00112 1.84848 1.28104 1.76571 1.41525 1.21335 0.92171 1.00382 1.02319 1.20894 0.96696 0.95312 0.97825 0.92920 0.92919 0.95069 0.92347 0.92856 0.92294 0.77246 0.88203 0.88358 0.85783 0.85678 0.75956 0.85629 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.19 16 3 C 0.24 5.69 1.83 -69.08 -0.13 5.56 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.54 -14.32 9.31 -34.44 -0.32 -14.65 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 9 Si 0.88 21.85 24.41 -169.99 -4.15 17.70 16 10 H -0.28 -6.61 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.70 -13.35 5.02 -54.93 -0.28 -13.63 16 14 C 0.50 8.94 6.39 -10.98 -0.07 8.87 16 15 O -0.54 -11.69 13.17 5.56 0.07 -11.62 16 16 C -0.11 -1.35 5.83 -29.04 -0.17 -1.52 16 17 C -0.06 -0.81 4.37 -104.60 -0.46 -1.27 16 18 C -0.09 -1.14 9.69 -39.60 -0.38 -1.52 16 19 C -0.14 -1.74 9.99 -39.43 -0.39 -2.13 16 20 C 0.09 1.16 6.70 -39.22 -0.26 0.89 16 21 O -0.50 -5.33 13.50 -19.42 -0.26 -5.59 16 22 C -0.14 -1.76 9.99 -39.43 -0.39 -2.15 16 23 C -0.09 -1.15 9.69 -39.61 -0.38 -1.53 16 24 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 25 H 0.05 1.03 5.64 -51.93 -0.29 0.74 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 6.50 8.54 -40.82 -0.35 6.15 16 31 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.39 2.00 9.06 45.56 0.41 2.42 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -33.36 305.32 -6.25 -39.60 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.13 Total: 7.65 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.88 Total: -13.12 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.50 Total: -39.23 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.19 Total: -17.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.36 -6.25 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.037 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds