Wall clock time and date at job start Sun Mar 29 2020 23:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.38265 * 119.94340 * 269.73184 * 17 16 14 19 19 C 1.38148 * 120.05503 * 179.72780 * 18 17 16 20 20 C 1.38737 * 119.94013 * 0.56402 * 19 18 17 21 21 O 1.35901 * 120.05411 * 179.68620 * 20 19 18 22 22 C 1.38728 * 119.88893 * 359.70851 * 20 19 18 23 23 C 1.38148 * 119.94680 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 26 26 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 27 27 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 28 28 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 29 29 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 31 31 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 32 32 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 33 33 H 1.07997 * 119.97291 * 359.97438 * 18 17 16 34 34 H 1.07997 * 120.03041 * 180.24923 * 19 18 17 35 35 H 0.96706 * 113.99746 * 270.02268 * 21 20 19 36 36 H 1.07997 * 120.02603 * 179.97438 * 22 20 19 37 37 H 1.07994 * 119.97287 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2179 -2.6510 12 1 6.4993 2.2817 -1.3822 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3618 3.8851 2.5235 18 6 -1.5576 5.1745 2.0642 19 6 -2.8383 5.6767 1.9375 20 6 -3.9278 4.8902 2.2827 21 8 -5.1884 5.3843 2.1651 22 6 -3.7283 3.5989 2.7487 23 6 -2.4459 3.0990 2.8673 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5137 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8292 -0.0603 -2.9502 30 1 2.2719 2.1233 1.9977 31 1 0.0672 2.6130 3.4685 32 1 0.7275 4.1530 2.8679 33 1 -0.7089 5.7880 1.8005 34 1 -2.9910 6.6825 1.5749 35 1 -5.5109 5.8325 2.9590 36 1 -4.5748 2.9849 3.0184 37 1 -2.2901 2.0936 3.2296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:15 Heat of formation + Delta-G solvation = -67.638441 kcal Electronic energy + Delta-G solvation = -19469.712442 eV Core-core repulsion = 16404.698696 eV Total energy + Delta-G solvation = -3065.013746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89647 -38.80286 -36.80027 -34.98137 -32.43394 -31.87495 -30.93851 -30.69323 -27.47264 -26.19411 -23.05728 -22.76525 -21.76200 -20.13838 -19.27422 -18.42681 -17.11308 -15.98354 -15.87099 -15.66813 -15.25100 -14.99187 -14.50017 -14.15786 -13.65700 -13.41244 -13.11049 -12.67892 -12.63585 -12.00823 -11.90702 -11.62469 -11.48300 -11.21926 -11.20348 -10.97629 -10.80549 -10.44620 -10.32037 -10.15113 -9.61422 -9.07569 -8.99135 -8.91023 -8.49455 -8.35459 -7.78799 -6.11471 -4.21195 1.27094 1.43286 3.25294 3.30881 3.31666 3.45051 3.62238 4.14595 4.25479 4.45921 4.85548 4.88395 5.02070 5.19518 5.38957 5.42214 5.62970 5.65629 5.72060 5.93015 6.06649 6.33770 6.40825 6.45213 6.47553 6.67610 6.68252 6.85815 7.05318 7.22230 7.39169 7.48871 7.60636 7.63094 7.75388 7.91916 8.19747 8.70024 8.79361 9.18361 9.46565 10.93728 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.004067 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.373452 B = 6882.440931 C = 7122.404050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.540 6.540 16 C -0.109 4.109 17 C -0.059 4.059 18 C -0.090 4.090 19 C -0.144 4.144 20 C 0.093 3.907 21 O -0.501 6.501 22 C -0.144 4.144 23 C -0.090 4.090 24 H 0.021 0.979 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.385 0.615 36 H 0.125 0.875 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 7.272 12.774 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.418 6.418 16 C -0.149 4.149 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.162 4.162 20 C 0.049 3.951 21 O -0.310 6.310 22 C -0.162 4.162 23 C -0.108 4.108 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.143 0.857 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.864 6.895 11.309 16.515 hybrid contribution 1.261 0.118 0.639 1.419 sum -8.603 7.013 11.949 16.309 Atomic orbital electron populations 1.21831 0.98339 0.97935 1.01260 1.21932 0.92593 0.99883 1.02192 1.18761 0.94079 0.89147 0.81121 0.93395 1.21204 0.90783 1.39088 1.06283 0.92171 1.24889 0.98559 0.94829 0.95401 1.69888 1.35202 1.37540 1.09307 0.86524 0.84924 0.78291 0.77444 1.20176 1.21143 1.20208 1.46494 1.14645 1.56223 1.18515 1.20205 0.82833 0.79604 0.88868 1.90703 1.51276 1.59408 1.40426 1.20771 0.94414 1.01520 0.98186 1.19395 0.94301 0.93852 0.98402 1.20886 0.96654 0.95343 0.97944 1.21324 0.92180 1.00370 1.02332 1.18444 0.83799 0.92596 1.00221 1.84853 1.28140 1.76556 1.41478 1.21317 0.97535 0.95794 1.01583 1.20868 0.91569 0.99182 0.99199 0.95960 0.94281 0.93194 0.88370 0.95107 0.92516 0.78047 0.88585 0.88497 0.85723 0.85673 0.76034 0.85692 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.71 -14.27 5.02 -54.92 -0.28 -14.54 16 14 C 0.50 9.54 6.39 -10.99 -0.07 9.47 16 15 O -0.54 -12.51 13.17 5.56 0.07 -12.44 16 16 C -0.11 -1.47 5.83 -29.03 -0.17 -1.64 16 17 C -0.06 -0.84 4.37 -104.60 -0.46 -1.29 16 18 C -0.09 -1.23 9.69 -39.60 -0.38 -1.61 16 19 C -0.14 -1.85 9.99 -39.43 -0.39 -2.24 16 20 C 0.09 1.20 6.70 -39.22 -0.26 0.94 16 21 O -0.50 -5.60 13.50 -19.43 -0.26 -5.86 16 22 C -0.14 -1.84 9.99 -39.43 -0.39 -2.23 16 23 C -0.09 -1.22 9.69 -39.60 -0.38 -1.60 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 26 H 0.05 1.21 7.85 -51.94 -0.41 0.81 16 27 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.65 8.54 -40.82 -0.35 6.30 16 31 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.38 2.18 9.06 45.56 0.41 2.59 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -32.30 312.09 -7.31 -39.61 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.26 Total: 9.40 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.89 Total: -12.24 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.35 Total: -38.66 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.19 Total: -18.30 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.30 -7.31 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.030 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds