Wall clock time and date at job start Sun Mar 29 2020 23:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.38265 * 119.94340 * 269.73184 * 17 16 14 19 19 C 1.38148 * 120.05503 * 179.72780 * 18 17 16 20 20 C 1.38737 * 119.94013 * 0.56402 * 19 18 17 21 21 O 1.35901 * 120.05411 * 179.68620 * 20 19 18 22 22 C 1.38728 * 119.88893 * 359.70851 * 20 19 18 23 23 C 1.38148 * 119.94680 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 26 26 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 27 27 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 28 28 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 29 29 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 31 31 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 32 32 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 33 33 H 1.07997 * 119.97291 * 359.97438 * 18 17 16 34 34 H 1.07997 * 120.03041 * 180.24923 * 19 18 17 35 35 H 0.96706 * 113.99746 * 270.02268 * 21 20 19 36 36 H 1.07997 * 120.02603 * 179.97438 * 22 20 19 37 37 H 1.07994 * 119.97287 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2179 -2.6510 12 1 6.4993 2.2817 -1.3822 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3618 3.8851 2.5235 18 6 -1.5576 5.1745 2.0642 19 6 -2.8383 5.6767 1.9375 20 6 -3.9278 4.8902 2.2827 21 8 -5.1884 5.3843 2.1651 22 6 -3.7283 3.5989 2.7487 23 6 -2.4459 3.0990 2.8673 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5137 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8292 -0.0603 -2.9502 30 1 2.2719 2.1233 1.9977 31 1 0.0672 2.6130 3.4685 32 1 0.7275 4.1530 2.8679 33 1 -0.7089 5.7880 1.8005 34 1 -2.9910 6.6825 1.5749 35 1 -5.5109 5.8325 2.9590 36 1 -4.5748 2.9849 3.0184 37 1 -2.2901 2.0936 3.2296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:15 Heat of formation + Delta-G solvation = -90.398376 kcal Electronic energy + Delta-G solvation = -19470.699387 eV Core-core repulsion = 16404.698696 eV Total energy + Delta-G solvation = -3066.000690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05639 -40.15964 -37.81871 -36.77241 -34.26350 -33.29184 -32.29054 -31.90089 -29.17018 -27.57946 -24.95437 -23.73731 -22.97886 -21.75549 -20.98777 -19.32756 -18.86478 -17.42666 -17.23592 -16.93066 -16.68148 -16.16114 -16.05998 -15.72746 -14.75956 -14.68862 -14.50265 -14.37084 -14.04125 -13.53860 -13.17547 -13.12280 -12.95188 -12.91686 -12.64666 -12.48882 -12.40370 -12.17073 -11.99971 -11.56228 -11.35408 -11.03772 -10.63515 -10.47467 -9.88964 -9.55665 -9.38660 -8.14146 -6.31747 0.28605 0.45165 1.45684 1.47419 1.55132 1.96699 2.37631 2.57318 2.98416 3.15311 3.33134 3.79446 3.93351 4.10251 4.29585 4.41854 4.46830 4.50671 4.59042 4.67976 4.76640 4.78784 5.00422 5.09007 5.11124 5.27736 5.36598 5.46295 5.48375 5.58590 5.67441 5.67869 5.82745 5.94454 5.98425 6.20102 6.77654 6.89685 7.08854 7.36447 7.69928 8.90804 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.004067 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.373452 B = 6882.440931 C = 7122.404050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.708 5.708 14 C 0.497 3.503 15 O -0.585 6.585 16 C -0.094 4.094 17 C -0.080 4.080 18 C -0.102 4.102 19 C -0.155 4.155 20 C 0.092 3.908 21 O -0.510 6.510 22 C -0.154 4.154 23 C -0.100 4.100 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.404 0.596 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.409 0.591 36 H 0.141 0.859 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 7.700 14.827 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.466 6.466 16 C -0.133 4.133 17 C -0.081 4.081 18 C -0.120 4.120 19 C -0.173 4.173 20 C 0.048 3.952 21 O -0.323 6.323 22 C -0.172 4.172 23 C -0.118 4.118 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.268 0.732 36 H 0.159 0.841 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.482 7.349 13.429 18.007 hybrid contribution 1.021 0.045 -0.004 1.022 sum -8.461 7.393 13.425 17.506 Atomic orbital electron populations 1.21662 0.97042 0.98940 1.00246 1.21777 0.93648 0.99331 1.01192 1.18308 0.93462 0.89087 0.81675 0.98813 1.21588 0.91571 1.38805 1.06664 0.90889 1.25784 1.03271 0.94451 0.95081 1.70056 1.37120 1.38452 1.09853 0.85440 0.79197 0.78437 0.77507 1.18821 1.21411 1.19649 1.46256 1.15760 1.56275 1.17425 1.21160 0.81580 0.78554 0.90273 1.90690 1.52415 1.60865 1.42647 1.20726 0.94681 1.02558 0.95341 1.19553 0.94703 0.94318 0.99503 1.21115 0.97366 0.95611 0.97909 1.21559 0.92103 1.01245 1.02436 1.18590 0.84372 0.92756 0.99516 1.84785 1.27348 1.76846 1.43367 1.21564 0.97977 0.96106 1.01591 1.21110 0.91796 0.99700 0.99152 0.93806 0.93384 0.96040 0.91328 0.93925 0.92709 0.76059 0.85475 0.85757 0.84913 0.84221 0.73206 0.84085 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.77 16 3 C 0.28 14.15 2.24 44.25 0.10 14.25 16 4 H -0.01 -0.37 7.58 -2.38 -0.02 -0.39 16 5 C -0.55 -28.69 8.73 25.60 0.22 -28.47 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.76 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.72 11.29 21.45 0.24 -52.48 16 9 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 N -0.71 -27.87 5.02 -446.08 -2.24 -30.11 16 14 C 0.50 18.52 6.39 87.66 0.56 19.08 16 15 O -0.59 -27.48 13.17 -3.03 -0.04 -27.52 16 16 C -0.09 -2.30 5.83 29.11 0.17 -2.13 16 17 C -0.08 -2.14 4.37 -19.85 -0.09 -2.23 16 18 C -0.10 -2.65 9.69 22.25 0.22 -2.43 16 19 C -0.16 -3.80 9.99 22.37 0.22 -3.58 16 20 C 0.09 2.24 6.70 22.51 0.15 2.39 16 21 O -0.51 -10.49 13.50 -92.44 -1.25 -11.73 16 22 C -0.15 -3.71 9.99 22.37 0.22 -3.49 16 23 C -0.10 -2.53 9.69 22.25 0.22 -2.31 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 2.06 5.64 -2.38 -0.01 2.05 16 26 H 0.02 1.05 7.85 -2.39 -0.02 1.03 16 27 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 28 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.40 13.09 8.54 -92.71 -0.79 12.29 16 31 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 32 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.41 3.76 9.06 -74.05 -0.67 3.08 16 36 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -71.36 312.09 1.59 -69.77 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.37 Total: 26.63 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 3.22 Total: -18.41 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.00 Total: -82.58 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.29 Total: -39.25 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -71.36 1.59 -69.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.630 kcal (2) G-P(sol) polarization free energy of solvation -71.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds