Wall clock time and date at job start Mon Mar 30 2020 00:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47255 * 2 1 4 4 N 1.46495 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00172 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99798 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00246 * 179.97438 * 5 4 3 8 8 C 1.50695 * 109.46992 * 180.02562 * 7 5 4 9 9 C 1.38299 * 119.93247 * 90.00201 * 8 7 5 10 10 C 1.38101 * 120.07425 * 179.97438 * 9 8 7 11 11 C 1.38886 * 119.92536 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47448 * 89.99502 * 17 15 13 19 19 H 1.48501 * 109.47175 * 209.99712 * 17 15 13 20 20 H 1.48506 * 109.47415 * 329.99678 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38106 * 119.92542 * 359.44577 * 21 11 10 23 23 H 1.08995 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47270 * 300.00399 * 1 2 3 25 25 H 1.08994 * 109.46845 * 60.00060 * 1 2 3 26 26 H 1.08998 * 109.47318 * 239.99125 * 2 1 3 27 27 H 1.09005 * 109.46796 * 119.99405 * 2 1 3 28 28 H 1.08998 * 109.47672 * 59.99342 * 3 2 1 29 29 H 1.09005 * 109.46733 * 299.99443 * 3 2 1 30 30 H 0.97005 * 120.00223 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.46621 * 60.00483 * 7 5 4 32 32 H 1.08996 * 109.47266 * 300.00146 * 7 5 4 33 33 H 1.07999 * 119.96503 * 0.02562 * 9 8 7 34 34 H 1.07992 * 120.03608 * 180.02562 * 10 9 8 35 35 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 37 37 H 1.07997 * 119.96326 * 180.27708 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6860 2.6096 0.0014 8 6 6.1883 4.0304 0.0013 9 6 6.4174 4.6815 1.1998 10 6 6.8782 5.9833 1.2031 11 6 7.1110 6.6389 0.0010 12 8 7.5645 7.9185 0.0010 13 6 7.8778 8.4569 1.1967 14 1 7.6870 7.9041 2.1046 15 6 8.4450 9.7206 1.2608 16 7 8.6779 10.3939 0.1549 17 14 8.8797 10.4663 2.9174 18 1 10.2717 10.0948 3.2776 19 1 8.7664 11.9449 2.8397 20 1 7.9467 9.9520 3.9520 21 6 6.8740 5.9847 -1.2008 22 6 6.4187 4.6808 -1.1973 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9565 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.9901 0.6024 0.0013 31 1 6.0499 2.0952 -0.8879 32 1 6.0486 2.0965 0.8921 33 1 6.2365 4.1710 2.1341 34 1 7.0572 6.4910 2.1393 35 1 9.0743 11.2781 0.1997 36 1 7.0499 6.4933 -2.1371 37 1 6.2384 4.1700 -2.1316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110598251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:04 Heat of formation + Delta-G solvation = -55.045922 kcal Electronic energy + Delta-G solvation = -18672.258393 eV Core-core repulsion = 15607.790700 eV Total energy + Delta-G solvation = -3064.467693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75039 -38.74033 -36.58816 -35.73090 -32.84222 -32.36059 -31.18550 -30.08371 -27.32213 -25.74725 -24.82750 -21.96148 -21.90335 -21.04421 -19.91413 -17.91930 -17.00177 -16.75993 -16.14944 -15.97637 -14.97034 -14.56295 -14.32376 -14.16539 -13.84307 -13.45349 -13.41954 -13.10130 -12.85947 -12.63817 -12.43263 -12.30016 -11.78636 -11.47543 -11.46140 -11.21646 -11.19002 -10.78669 -10.70140 -10.56523 -10.38249 -9.65739 -9.26931 -9.09439 -8.76871 -8.08228 -7.09796 -6.39590 -3.97989 2.31502 2.33169 2.83548 3.15275 3.17023 3.22068 3.27972 4.01523 4.52843 4.61123 4.63553 4.88757 5.04060 5.16799 5.28067 5.29675 5.32661 5.35563 5.39160 5.51883 5.69163 5.72352 5.78980 5.80689 5.89500 5.91982 6.28201 6.40792 6.48542 6.77082 6.98274 7.11708 7.30415 7.43726 7.49661 7.53089 7.90869 8.05959 8.38546 9.06190 9.77542 10.78698 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.003255 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.819999 B = 8600.297478 C = 8837.850925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.743 5.743 5 C 0.507 3.493 6 O -0.521 6.521 7 C -0.080 4.080 8 C -0.170 4.170 9 C -0.057 4.057 10 C -0.232 4.232 11 C 0.156 3.844 12 O -0.179 6.179 13 C -0.390 4.390 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.192 4.192 22 C -0.060 4.060 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.397 0.603 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.269 0.731 36 H 0.116 0.884 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 -20.540 0.671 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.397 5.397 5 C 0.293 3.707 6 O -0.395 6.395 7 C -0.120 4.120 8 C -0.171 4.171 9 C -0.075 4.075 10 C -0.252 4.252 11 C 0.103 3.897 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.211 4.211 22 C -0.078 4.078 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.231 0.769 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.507 -19.334 0.427 21.549 hybrid contribution 0.354 -0.077 0.890 0.961 sum -9.153 -19.411 1.318 21.501 Atomic orbital electron populations 1.21684 0.94684 1.02009 1.02429 1.21732 0.96917 0.96069 1.02561 1.21347 0.80225 0.96731 1.02361 1.46119 1.07001 1.08880 1.77693 1.21081 0.90694 0.83245 0.75633 1.90747 1.70285 1.31215 1.47259 1.20405 0.90679 0.97071 1.03811 1.18644 1.09969 0.94780 0.93725 1.20505 0.96728 0.94117 0.96163 1.21103 1.09652 0.96016 0.98393 1.19388 0.91757 0.85303 0.93279 1.83976 1.71041 1.20290 1.32916 1.21329 1.41607 1.00585 0.83159 0.89102 1.25286 0.96383 0.95671 0.99244 1.70041 1.40385 1.12531 1.26961 0.85713 0.79074 0.78399 0.80239 1.19915 1.20293 1.19218 1.20152 1.09640 0.95088 0.96210 1.20399 0.97364 0.93738 0.96313 0.92290 0.92333 0.92324 0.91395 0.91405 0.91730 0.91711 0.76910 0.89008 0.89050 0.87852 0.85597 0.92085 0.86552 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.84 6.05 -26.73 -0.16 -1.00 16 3 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 4 N -0.74 -7.43 5.56 -60.29 -0.33 -7.76 16 5 C 0.51 7.23 7.82 -10.98 -0.09 7.15 16 6 O -0.52 -10.20 16.03 5.55 0.09 -10.12 16 7 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 8 C -0.17 -3.06 4.38 -104.58 -0.46 -3.52 16 9 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 10 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 11 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 12 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 13 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 14 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 17 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 C -0.19 -4.30 9.99 -39.39 -0.39 -4.70 16 22 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.40 2.61 8.47 -40.82 -0.35 2.26 16 31 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -34.84 320.69 -6.91 -41.75 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.12 Total: 3.43 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.11 Total: -17.67 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.42 Total: -32.93 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.84 -6.91 -41.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110598251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.295 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds