Wall clock time and date at job start Mon Mar 30 2020 00:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47255 * 2 1 4 4 N 1.46495 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00172 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99798 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00246 * 179.97438 * 5 4 3 8 8 C 1.50695 * 109.46992 * 180.02562 * 7 5 4 9 9 C 1.38299 * 119.93247 * 90.00201 * 8 7 5 10 10 C 1.38101 * 120.07425 * 179.97438 * 9 8 7 11 11 C 1.38886 * 119.92536 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47448 * 89.99502 * 17 15 13 19 19 H 1.48501 * 109.47175 * 209.99712 * 17 15 13 20 20 H 1.48506 * 109.47415 * 329.99678 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38106 * 119.92542 * 359.44577 * 21 11 10 23 23 H 1.08995 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47270 * 300.00399 * 1 2 3 25 25 H 1.08994 * 109.46845 * 60.00060 * 1 2 3 26 26 H 1.08998 * 109.47318 * 239.99125 * 2 1 3 27 27 H 1.09005 * 109.46796 * 119.99405 * 2 1 3 28 28 H 1.08998 * 109.47672 * 59.99342 * 3 2 1 29 29 H 1.09005 * 109.46733 * 299.99443 * 3 2 1 30 30 H 0.97005 * 120.00223 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.46621 * 60.00483 * 7 5 4 32 32 H 1.08996 * 109.47266 * 300.00146 * 7 5 4 33 33 H 1.07999 * 119.96503 * 0.02562 * 9 8 7 34 34 H 1.07992 * 120.03608 * 180.02562 * 10 9 8 35 35 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 37 37 H 1.07997 * 119.96326 * 180.27708 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6860 2.6096 0.0014 8 6 6.1883 4.0304 0.0013 9 6 6.4174 4.6815 1.1998 10 6 6.8782 5.9833 1.2031 11 6 7.1110 6.6389 0.0010 12 8 7.5645 7.9185 0.0010 13 6 7.8778 8.4569 1.1967 14 1 7.6870 7.9041 2.1046 15 6 8.4450 9.7206 1.2608 16 7 8.6779 10.3939 0.1549 17 14 8.8797 10.4663 2.9174 18 1 10.2717 10.0948 3.2776 19 1 8.7664 11.9449 2.8397 20 1 7.9467 9.9520 3.9520 21 6 6.8740 5.9847 -1.2008 22 6 6.4187 4.6808 -1.1973 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9565 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.9901 0.6024 0.0013 31 1 6.0499 2.0952 -0.8879 32 1 6.0486 2.0965 0.8921 33 1 6.2365 4.1710 2.1341 34 1 7.0572 6.4910 2.1393 35 1 9.0743 11.2781 0.1997 36 1 7.0499 6.4933 -2.1371 37 1 6.2384 4.1700 -2.1316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110598251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:03 Heat of formation + Delta-G solvation = -79.554616 kcal Electronic energy + Delta-G solvation = -18673.321170 eV Core-core repulsion = 15607.790700 eV Total energy + Delta-G solvation = -3065.530470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07093 -40.36018 -38.25956 -36.66601 -34.40064 -33.66956 -32.58621 -31.77124 -28.61699 -27.35632 -26.18504 -23.63278 -22.69636 -22.41804 -21.12848 -19.84027 -18.85389 -17.85058 -17.19981 -16.85448 -16.38561 -16.28703 -15.81898 -15.52598 -15.47132 -15.01963 -14.74922 -14.40453 -14.14186 -13.79165 -13.63516 -13.44254 -12.99434 -12.91184 -12.73315 -12.45767 -12.27786 -12.25503 -12.11423 -11.99795 -11.72805 -11.18006 -10.91593 -10.73102 -10.04215 -9.75960 -8.89579 -8.47325 -6.15569 0.61815 0.67876 1.33934 1.43771 1.52051 1.75236 2.17912 2.31583 2.85977 3.18882 3.52162 3.87642 3.95596 4.05741 4.10172 4.18481 4.24859 4.39084 4.50266 4.60377 4.67910 4.73032 4.79307 4.81475 4.90754 5.09835 5.14949 5.16241 5.26468 5.31070 5.37558 5.55553 5.57234 5.71922 5.78622 6.02992 6.23841 6.67447 6.97094 7.39775 7.78668 8.76276 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.003255 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.819999 B = 8600.297478 C = 8837.850925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.720 5.720 5 C 0.506 3.494 6 O -0.585 6.585 7 C -0.077 4.077 8 C -0.147 4.147 9 C -0.061 4.061 10 C -0.245 4.245 11 C 0.111 3.889 12 O -0.234 6.234 13 C -0.415 4.415 14 H 0.100 0.900 15 C -0.025 4.025 16 N -0.922 5.922 17 Si 1.021 2.979 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.255 1.255 21 C -0.207 4.207 22 C -0.058 4.058 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.419 0.581 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.273 0.727 36 H 0.112 0.888 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -24.601 1.759 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.010 4.010 4 N -0.374 5.374 5 C 0.294 3.706 6 O -0.465 6.465 7 C -0.116 4.116 8 C -0.148 4.148 9 C -0.079 4.079 10 C -0.264 4.264 11 C 0.061 3.939 12 O -0.141 6.141 13 C -0.491 4.491 14 H 0.117 0.883 15 C -0.222 4.222 16 N -0.560 5.560 17 Si 0.840 3.160 18 H -0.185 1.185 19 H -0.195 1.195 20 H -0.178 1.178 21 C -0.226 4.226 22 C -0.076 4.076 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.256 0.744 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.084 -23.522 1.509 25.636 hybrid contribution 0.357 0.802 0.447 0.986 sum -9.727 -22.719 1.956 24.791 Atomic orbital electron populations 1.21711 0.94558 1.02799 1.01980 1.21674 0.96923 0.93656 1.03893 1.21413 0.79831 0.98846 1.00870 1.45918 1.07301 1.08735 1.75433 1.21260 0.91199 0.83304 0.74822 1.90752 1.71500 1.33572 1.50645 1.20534 0.89591 0.93775 1.07724 1.19296 1.05818 0.97200 0.92457 1.20943 0.95559 0.92789 0.98615 1.21231 1.10280 0.97651 0.97212 1.19947 0.93579 0.84978 0.95394 1.83936 1.73946 1.22653 1.33540 1.21830 1.42228 1.01408 0.83625 0.88269 1.26634 0.95888 0.95751 1.03909 1.70190 1.42654 1.13306 1.29881 0.84562 0.79360 0.77426 0.74670 1.18503 1.19496 1.17836 1.20446 1.10187 0.96743 0.95265 1.20888 0.95696 0.92295 0.98754 0.90846 0.92868 0.92825 0.89979 0.90032 0.93373 0.93286 0.74368 0.85006 0.85257 0.84382 0.86488 0.91818 0.86993 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.12 6.05 30.60 0.19 -0.94 16 3 C 0.11 1.92 5.67 86.38 0.49 2.41 16 4 N -0.72 -11.50 5.56 -463.05 -2.57 -14.07 16 5 C 0.51 12.58 7.82 87.66 0.69 13.27 16 6 O -0.59 -21.99 16.03 -3.05 -0.05 -22.04 16 7 C -0.08 -1.55 5.83 29.10 0.17 -1.38 16 8 C -0.15 -4.80 4.38 -19.84 -0.09 -4.89 16 9 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 10 C -0.24 -11.49 9.17 22.39 0.21 -11.29 16 11 C 0.11 5.94 6.65 22.58 0.15 6.09 16 12 O -0.23 -14.87 9.76 -22.72 -0.22 -15.09 16 13 C -0.41 -25.31 9.49 67.92 0.64 -24.66 16 14 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 15 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 16 N -0.92 -58.44 13.67 21.62 0.30 -58.14 16 17 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 21 C -0.21 -9.55 9.99 22.39 0.22 -9.32 16 22 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 23 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.42 3.21 8.47 -92.70 -0.79 2.42 16 31 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 33 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 37 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -83.62 320.69 4.05 -79.57 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.29 Total: 19.73 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 4.28 Total: -36.36 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -2.28 Total: -72.21 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.27 Total: -37.13 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -83.62 4.05 -79.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110598251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.018 kcal (2) G-P(sol) polarization free energy of solvation -83.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds