Wall clock time and date at job start Sun Mar 29 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 C 1.50704 * 109.47144 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99561 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00135 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99933 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47005 * 179.97438 * 7 6 4 9 9 C 1.38328 * 119.96230 * 269.97666 * 8 7 6 10 10 C 1.38280 * 120.13484 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.07150 * 359.67534 * 10 9 8 12 12 C 1.38861 * 119.92830 * 0.59673 * 11 10 9 13 13 O 1.35751 * 120.06597 * 179.69892 * 12 11 10 14 14 C 1.34829 * 117.00376 * 354.17384 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38657 * 120.00083 * 185.03464 * 14 13 12 17 17 N 1.31555 * 119.99797 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99748 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47410 * 90.00109 * 18 16 14 20 20 H 1.48504 * 109.46801 * 209.99865 * 18 16 14 21 21 H 1.48497 * 109.47495 * 329.99577 * 18 16 14 22 22 C 1.38073 * 119.96947 * 89.99513 * 8 7 6 23 23 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46913 * 300.00011 * 1 2 3 25 25 H 1.09003 * 109.47125 * 59.99737 * 1 2 3 26 26 H 1.09007 * 109.46913 * 239.99989 * 2 1 3 27 27 H 1.09003 * 109.47125 * 120.00262 * 2 1 3 28 28 H 1.09007 * 109.47155 * 60.00137 * 3 2 1 29 29 H 1.09003 * 109.47254 * 300.00184 * 3 2 1 30 30 H 0.97001 * 119.99467 * 359.97438 * 6 4 3 31 31 H 1.08993 * 109.47130 * 59.99768 * 7 6 4 32 32 H 1.09003 * 109.47080 * 299.99631 * 7 6 4 33 33 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 34 34 H 1.08007 * 119.96121 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.03709 * 180.32387 * 11 10 9 36 36 H 0.96998 * 119.99749 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.03594 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0015 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0014 8 6 6.1884 4.0303 -0.0013 9 6 6.4182 4.6819 -1.1996 10 6 6.8796 5.9854 -1.2037 11 6 7.1062 6.6431 -0.0104 12 6 6.8819 5.9898 1.1942 13 8 7.1094 6.6315 2.3686 14 6 7.6663 7.8574 2.2984 15 1 7.8353 8.3195 1.3371 16 6 8.0219 8.5249 3.4606 17 7 8.5656 9.7208 3.3921 18 14 7.7301 7.7253 5.1234 19 1 8.9255 6.9327 5.5082 20 1 7.4848 8.7774 6.1423 21 1 6.5480 6.8302 5.0417 22 6 6.4192 4.6801 1.1949 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7360 3.4496 0.0001 31 1 6.0485 2.0963 -0.8920 32 1 6.0500 2.0949 0.8879 33 1 6.2368 4.1715 -2.1340 34 1 7.0585 6.4914 -2.1410 35 1 7.4616 7.6629 -0.0143 36 1 8.8140 10.1879 4.2051 37 1 6.2402 4.1706 2.1302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113110622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:13 Heat of formation + Delta-G solvation = -58.077282 kcal Electronic energy + Delta-G solvation = -18687.968677 eV Core-core repulsion = 15623.369534 eV Total energy + Delta-G solvation = -3064.599143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87178 -39.18461 -37.03891 -34.78676 -34.37061 -32.46668 -31.02405 -29.50126 -28.25813 -25.76324 -25.02296 -22.12387 -21.80975 -20.73686 -20.28549 -17.90826 -17.53265 -16.73301 -16.07043 -15.85535 -15.33426 -15.05740 -14.44293 -14.11719 -13.96557 -13.85840 -13.50057 -13.24753 -12.85969 -12.60909 -12.32821 -12.21243 -11.96529 -11.90917 -11.49961 -11.38987 -10.96953 -10.95422 -10.90707 -10.78740 -10.23336 -9.90491 -9.48955 -9.04946 -8.95122 -8.35882 -7.51078 -6.48660 -4.16138 1.78630 2.12206 2.63248 3.16942 3.21570 3.33260 3.35453 4.17644 4.37379 4.62415 4.64799 4.73215 4.78974 5.01051 5.08999 5.23822 5.26802 5.39701 5.40932 5.52212 5.61526 5.72212 5.78042 5.85529 5.93387 5.98449 6.09521 6.12279 6.39304 6.42631 6.64690 6.96945 7.08368 7.17628 7.45043 7.53816 7.70551 7.95058 8.21510 8.86201 9.47004 10.58777 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024831 B = 0.003756 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.345090 B = 7453.325137 C = 8147.472129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.509 3.491 5 O -0.548 6.548 6 N -0.723 5.723 7 C 0.167 3.833 8 C -0.075 4.075 9 C -0.187 4.187 10 C -0.077 4.077 11 C -0.213 4.213 12 C 0.157 3.843 13 O -0.215 6.215 14 C -0.392 4.392 15 H 0.107 0.893 16 C 0.064 3.936 17 N -0.877 5.877 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.172 4.172 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.403 0.597 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 -12.493 -6.996 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.182 4.182 4 C 0.295 3.705 5 O -0.426 6.426 6 N -0.375 5.375 7 C 0.044 3.956 8 C -0.076 4.076 9 C -0.206 4.206 10 C -0.095 4.095 11 C -0.232 4.232 12 C 0.104 3.896 13 O -0.120 6.120 14 C -0.467 4.467 15 H 0.124 0.876 16 C -0.139 4.139 17 N -0.515 5.515 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.192 4.192 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.238 0.762 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.415 -13.116 -6.621 18.606 hybrid contribution -0.107 0.544 0.643 0.849 sum -11.522 -12.572 -5.978 18.071 Atomic orbital electron populations 1.21802 0.95577 1.01867 1.01809 1.21272 0.95140 0.94785 1.03511 1.21731 0.91874 1.00108 1.04466 1.20781 0.90316 0.83572 0.75787 1.90691 1.70625 1.31377 1.49877 1.46194 1.07404 1.08800 1.75077 1.20141 0.79325 0.93613 1.02531 1.19277 1.00954 0.94301 0.93036 1.20552 1.07851 0.95812 0.96410 1.20809 0.97313 0.94275 0.97141 1.21369 1.07949 1.02016 0.91871 1.19058 0.93513 0.91040 0.85955 1.83574 1.70803 1.31160 1.26508 1.20763 1.39404 0.89604 0.96937 0.87586 1.24471 0.95164 0.95113 0.99174 1.69641 1.39500 1.12103 1.30256 0.86179 0.79943 0.79168 0.81606 1.19810 1.20713 1.18374 1.20079 1.08338 0.93149 0.97589 0.92488 0.92649 0.92704 0.91313 0.91269 0.88861 0.88945 0.76211 0.90936 0.90927 0.87302 0.86955 0.84816 0.90949 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.11 -0.97 5.22 -26.73 -0.14 -1.11 16 3 C -0.14 -1.23 5.70 -27.88 -0.16 -1.38 16 4 C 0.51 6.34 7.83 -10.98 -0.09 6.26 16 5 O -0.55 -8.91 15.98 5.56 0.09 -8.82 16 6 N -0.72 -8.70 5.55 -61.47 -0.34 -9.04 16 7 C 0.17 2.30 5.80 -5.20 -0.03 2.27 16 8 C -0.08 -1.18 5.25 -104.65 -0.55 -1.73 16 9 C -0.19 -2.88 9.70 -39.53 -0.38 -3.27 16 10 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 11 C -0.21 -4.34 9.17 -39.39 -0.36 -4.70 16 12 C 0.16 3.44 6.65 -39.11 -0.26 3.18 16 13 O -0.22 -5.50 8.59 0.05 0.00 -5.50 16 14 C -0.39 -10.74 9.95 30.89 0.31 -10.43 16 15 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 17 N -0.88 -24.87 13.96 55.48 0.77 -24.09 16 18 Si 0.91 21.25 28.62 -169.99 -4.86 16.38 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.17 -3.20 9.65 -39.40 -0.38 -3.58 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 4.19 8.46 -40.82 -0.35 3.85 16 31 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 36 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -30.28 319.47 -6.82 -37.10 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.13 Total: 4.35 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.17 Total: -15.20 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.43 Total: -33.14 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.28 -6.82 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113110622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.978 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds