Wall clock time and date at job start Sun Mar 29 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 C 1.50704 * 109.47144 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99561 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00135 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99933 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47005 * 179.97438 * 7 6 4 9 9 C 1.38328 * 119.96230 * 269.97666 * 8 7 6 10 10 C 1.38280 * 120.13484 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.07150 * 359.67534 * 10 9 8 12 12 C 1.38861 * 119.92830 * 0.59673 * 11 10 9 13 13 O 1.35751 * 120.06597 * 179.69892 * 12 11 10 14 14 C 1.34829 * 117.00376 * 354.17384 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38657 * 120.00083 * 185.03464 * 14 13 12 17 17 N 1.31555 * 119.99797 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99748 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47410 * 90.00109 * 18 16 14 20 20 H 1.48504 * 109.46801 * 209.99865 * 18 16 14 21 21 H 1.48497 * 109.47495 * 329.99577 * 18 16 14 22 22 C 1.38073 * 119.96947 * 89.99513 * 8 7 6 23 23 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46913 * 300.00011 * 1 2 3 25 25 H 1.09003 * 109.47125 * 59.99737 * 1 2 3 26 26 H 1.09007 * 109.46913 * 239.99989 * 2 1 3 27 27 H 1.09003 * 109.47125 * 120.00262 * 2 1 3 28 28 H 1.09007 * 109.47155 * 60.00137 * 3 2 1 29 29 H 1.09003 * 109.47254 * 300.00184 * 3 2 1 30 30 H 0.97001 * 119.99467 * 359.97438 * 6 4 3 31 31 H 1.08993 * 109.47130 * 59.99768 * 7 6 4 32 32 H 1.09003 * 109.47080 * 299.99631 * 7 6 4 33 33 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 34 34 H 1.08007 * 119.96121 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.03709 * 180.32387 * 11 10 9 36 36 H 0.96998 * 119.99749 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.03594 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0015 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0014 8 6 6.1884 4.0303 -0.0013 9 6 6.4182 4.6819 -1.1996 10 6 6.8796 5.9854 -1.2037 11 6 7.1062 6.6431 -0.0104 12 6 6.8819 5.9898 1.1942 13 8 7.1094 6.6315 2.3686 14 6 7.6663 7.8574 2.2984 15 1 7.8353 8.3195 1.3371 16 6 8.0219 8.5249 3.4606 17 7 8.5656 9.7208 3.3921 18 14 7.7301 7.7253 5.1234 19 1 8.9255 6.9327 5.5082 20 1 7.4848 8.7774 6.1423 21 1 6.5480 6.8302 5.0417 22 6 6.4192 4.6801 1.1949 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7360 3.4496 0.0001 31 1 6.0485 2.0963 -0.8920 32 1 6.0500 2.0949 0.8879 33 1 6.2368 4.1715 -2.1340 34 1 7.0585 6.4914 -2.1410 35 1 7.4616 7.6629 -0.0143 36 1 8.8140 10.1879 4.2051 37 1 6.2402 4.1706 2.1302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113110622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:13 Heat of formation + Delta-G solvation = -77.306618 kcal Electronic energy + Delta-G solvation = -18688.802524 eV Core-core repulsion = 15623.369534 eV Total energy + Delta-G solvation = -3065.432989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12757 -40.57526 -38.60562 -35.84796 -35.21239 -34.46353 -32.33725 -31.03349 -29.11204 -27.37081 -26.49195 -23.37658 -22.84787 -22.21361 -21.23201 -19.71685 -19.06926 -17.89064 -17.02806 -16.98625 -16.78891 -16.53770 -15.86675 -15.68243 -15.26730 -15.10805 -14.75043 -14.44421 -14.20766 -14.01289 -13.79337 -13.50538 -13.12393 -12.79763 -12.68601 -12.56425 -12.47602 -12.38470 -12.00396 -11.94934 -11.60198 -11.33775 -10.98669 -10.89829 -10.10261 -9.79540 -9.13790 -8.51212 -6.24112 0.34044 0.63231 1.31249 1.34663 1.50871 1.67346 2.26699 2.29822 2.79174 2.97098 3.15309 3.72756 3.87254 4.04154 4.06736 4.14896 4.25903 4.39676 4.48398 4.56796 4.65412 4.73234 4.73588 4.79820 4.91494 4.94931 5.17387 5.24656 5.30358 5.35301 5.40343 5.49890 5.61549 5.67545 5.73821 5.87899 6.17895 6.57525 6.83309 7.26337 7.56964 8.60272 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024831 B = 0.003756 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.345090 B = 7453.325137 C = 8147.472129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.507 3.493 5 O -0.590 6.590 6 N -0.717 5.717 7 C 0.172 3.828 8 C -0.061 4.061 9 C -0.159 4.159 10 C -0.073 4.073 11 C -0.229 4.229 12 C 0.120 3.880 13 O -0.245 6.245 14 C -0.399 4.399 15 H 0.084 0.916 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.171 4.171 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.414 0.586 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.285 0.715 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 -14.366 -8.289 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.174 4.174 4 C 0.296 3.704 5 O -0.470 6.470 6 N -0.369 5.369 7 C 0.049 3.951 8 C -0.061 4.061 9 C -0.178 4.178 10 C -0.091 4.091 11 C -0.248 4.248 12 C 0.071 3.929 13 O -0.153 6.153 14 C -0.475 4.475 15 H 0.101 0.899 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.190 4.190 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.250 0.750 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.290 -14.996 -7.952 21.557 hybrid contribution 0.392 0.913 0.736 1.236 sum -12.897 -14.083 -7.216 20.414 Atomic orbital electron populations 1.21765 0.93734 1.02373 1.02698 1.21258 0.96673 0.94770 1.02063 1.21786 0.88753 1.00337 1.06559 1.21452 0.91801 0.82734 0.74463 1.90680 1.71736 1.32826 1.51792 1.46109 1.06609 1.09423 1.74767 1.20020 0.80543 0.91764 1.02815 1.19477 0.99470 0.95017 0.92147 1.21033 1.04171 0.94848 0.97768 1.21148 0.96161 0.94888 0.96903 1.21409 1.08841 1.01455 0.93116 1.19569 0.95250 0.92416 0.85670 1.83519 1.72940 1.30548 1.28246 1.20708 1.39752 0.90681 0.96359 0.89883 1.25250 0.95225 0.95670 1.02587 1.69722 1.41719 1.13546 1.31324 0.85246 0.79619 0.78421 0.77620 1.19295 1.19216 1.18673 1.20268 1.07700 0.91907 0.99159 0.92292 0.91928 0.91583 0.92594 0.93035 0.86984 0.86363 0.74991 0.89871 0.91665 0.83337 0.83773 0.87169 0.90559 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.11 -1.73 5.22 30.59 0.16 -1.57 16 3 C -0.13 -1.90 5.70 29.85 0.17 -1.73 16 4 C 0.51 11.32 7.83 87.66 0.69 12.01 16 5 O -0.59 -18.28 15.98 -3.04 -0.05 -18.33 16 6 N -0.72 -14.91 5.55 -466.79 -2.59 -17.50 16 7 C 0.17 4.20 5.80 85.63 0.50 4.69 16 8 C -0.06 -1.72 5.25 -19.88 -0.10 -1.83 16 9 C -0.16 -4.23 9.70 22.30 0.22 -4.01 16 10 C -0.07 -2.26 10.04 22.25 0.22 -2.04 16 11 C -0.23 -9.41 9.17 22.39 0.21 -9.20 16 12 C 0.12 5.34 6.65 22.58 0.15 5.49 16 13 O -0.24 -12.93 8.59 -22.74 -0.20 -13.12 16 14 C -0.40 -22.96 9.95 67.92 0.68 -22.28 16 15 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 16 C 0.01 0.64 5.49 84.83 0.47 1.11 16 17 N -0.92 -54.37 13.96 21.61 0.30 -54.07 16 18 Si 0.97 44.83 28.62 68.60 1.96 46.79 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 22 C -0.17 -6.17 9.65 22.39 0.22 -5.95 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 27 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 28 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.41 7.03 8.46 -92.71 -0.78 6.25 16 31 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 32 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 36 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -68.84 319.47 3.99 -64.85 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.29 Total: 17.61 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 4.27 Total: -26.22 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.29 Total: -71.57 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.24 Total: -31.46 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.96 Total: 46.79 kcal Total: -68.84 3.99 -64.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113110622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.458 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds