Wall clock time and date at job start Mon Mar 30 2020 00:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 C 1.52995 * 109.46738 * 269.97472 * 7 6 5 9 9 H 1.09006 * 109.47476 * 55.00253 * 8 7 6 10 10 C 1.52999 * 109.47408 * 294.99619 * 8 7 6 11 11 C 1.50703 * 109.47092 * 174.99864 * 8 7 6 12 12 O 1.21300 * 119.99725 * 0.02562 * 11 8 7 13 13 N 1.34772 * 120.00388 * 180.02562 * 11 8 7 14 14 C 1.37101 * 120.00065 * 179.97438 * 13 11 8 15 15 H 1.07999 * 120.00061 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99807 * 179.97438 * 14 13 11 17 17 N 1.31410 * 120.00191 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00115 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46865 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47128 * 120.00158 * 18 16 14 21 21 H 1.48496 * 109.47361 * 240.00300 * 18 16 14 22 22 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 23 23 C 1.38139 * 120.05510 * 0.02562 * 22 6 5 24 24 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 25 25 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 29 29 H 1.09001 * 109.46891 * 29.97509 * 7 6 5 30 30 H 1.08994 * 109.47121 * 149.97471 * 7 6 5 31 31 H 1.09001 * 109.46995 * 60.00424 * 10 8 7 32 32 H 1.08999 * 109.46920 * 180.02562 * 10 8 7 33 33 H 1.08993 * 109.47332 * 300.00374 * 10 8 7 34 34 H 0.96999 * 120.00025 * 359.97438 * 13 11 8 35 35 H 0.96998 * 119.99999 * 179.97438 * 17 16 14 36 36 H 1.08008 * 119.97007 * 179.97438 * 22 6 5 37 37 H 1.08001 * 120.02451 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 6 4.2180 5.4727 -1.4436 9 1 3.2708 5.4675 -1.9830 10 6 5.1994 4.5184 -2.1271 11 6 4.7895 6.8671 -1.4455 12 8 4.9918 7.4411 -0.3963 13 7 5.0759 7.4765 -2.6130 14 6 5.5953 8.7453 -2.6148 15 1 5.7746 9.2566 -1.6806 16 6 5.8910 9.3733 -3.8185 17 7 5.6723 8.7513 -4.9552 18 14 6.5980 11.1023 -3.8209 19 1 6.7479 11.5777 -2.4221 20 1 7.9263 11.0930 -4.4851 21 1 5.6827 12.0104 -4.5575 22 6 4.0560 2.5170 -0.0005 23 6 3.4313 1.2849 -0.0004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2129 2.3201 -0.0099 28 1 1.3341 4.5114 -0.0014 29 1 3.3578 5.7465 0.5124 30 1 4.9437 4.9384 0.5131 31 1 4.7860 3.5098 -2.1257 32 1 5.3650 4.8422 -3.1546 33 1 6.1465 4.5236 -1.5878 34 1 4.9145 7.0174 -3.4521 35 1 5.8784 9.1898 -5.7955 36 1 5.1345 2.5751 -0.0009 37 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123099216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:19 Heat of formation + Delta-G solvation = -68.052334 kcal Electronic energy + Delta-G solvation = -19083.626470 eV Core-core repulsion = 16018.594777 eV Total energy + Delta-G solvation = -3065.031693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21620 -38.68570 -37.54735 -34.27569 -33.66676 -31.31142 -31.09498 -29.92593 -27.78046 -25.83647 -25.14454 -22.96286 -22.26367 -20.75361 -18.70770 -18.18759 -17.80198 -16.38127 -16.06818 -15.85580 -15.00341 -14.68249 -14.45334 -14.16611 -13.99164 -13.71134 -13.42323 -13.21463 -12.63749 -12.53215 -12.16950 -11.98922 -11.63253 -11.56197 -11.22743 -11.10737 -10.94217 -10.84135 -10.54043 -10.43151 -10.32810 -10.17010 -9.50670 -8.96831 -8.33510 -7.99586 -7.94697 -6.40186 -3.80889 1.36305 1.45432 3.16517 3.17060 3.27500 3.34826 3.77325 3.94520 4.19311 4.73082 4.84653 4.86274 4.93455 4.95810 5.23113 5.24303 5.30036 5.37770 5.44898 5.49217 5.60755 5.69654 5.78834 5.97992 6.14712 6.22602 6.28167 6.30122 6.37240 6.48247 6.62988 6.68850 6.81599 6.86048 7.33065 7.56796 8.08310 8.62914 9.19372 9.57672 10.08769 10.77550 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.003449 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.446925 B = 8116.304167 C = 8196.085063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.112 3.888 4 C -0.206 4.206 5 C -0.078 4.078 6 C -0.103 4.103 7 C -0.054 4.054 8 C -0.096 4.096 9 H 0.080 0.920 10 C -0.143 4.143 11 C 0.445 3.555 12 O -0.597 6.597 13 N -0.561 5.561 14 C -0.300 4.300 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.076 4.076 23 C -0.151 4.151 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.393 0.607 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -15.715 6.071 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.068 3.932 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.103 4.103 7 C -0.092 4.092 8 C -0.117 4.117 9 H 0.098 0.902 10 C -0.201 4.201 11 C 0.231 3.769 12 O -0.483 6.483 13 N -0.196 5.196 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.542 5.542 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.094 4.094 23 C -0.170 4.170 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.231 -15.441 6.565 18.688 hybrid contribution -0.086 0.726 -0.732 1.035 sum -8.316 -14.715 5.833 17.881 Atomic orbital electron populations 1.23010 0.78707 1.03618 1.01336 1.86044 1.21145 1.27257 1.89111 1.19000 0.92394 0.83956 0.97883 1.21184 0.99752 0.92397 1.09131 1.20907 0.94214 0.96990 0.97544 1.20007 0.93471 0.95761 1.01103 1.20312 1.00921 0.91815 0.96168 1.21090 0.99740 0.94283 0.96612 0.90160 1.21842 0.98900 0.98616 1.00743 1.19895 0.84641 0.87715 0.84633 1.90508 1.58918 1.67340 1.31549 1.41907 1.55602 1.15282 1.06830 1.19777 1.37848 0.90906 0.94432 0.87911 1.25264 0.97846 1.00157 0.94701 1.69622 1.48610 1.38437 0.97574 0.85817 0.78369 0.81710 0.78548 1.19230 1.20757 1.20766 1.20947 1.00025 0.90876 0.97583 1.20396 0.91265 0.98578 1.06712 0.92792 0.92705 0.88505 0.85789 0.85694 0.90402 0.90598 0.92298 0.92137 0.92478 0.77359 0.91935 0.85210 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.66 10.50 -19.44 -0.20 -3.86 16 3 C 0.11 1.39 6.69 -39.22 -0.26 1.12 16 4 C -0.21 -2.42 9.04 -39.44 -0.36 -2.77 16 5 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 6 C -0.10 -1.42 4.71 -104.60 -0.49 -1.92 16 7 C -0.05 -0.88 4.19 -27.88 -0.12 -1.00 16 8 C -0.10 -1.71 2.71 -91.77 -0.25 -1.96 16 9 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 10 C -0.14 -2.28 8.66 37.16 0.32 -1.96 16 11 C 0.45 10.58 7.11 -10.99 -0.08 10.51 16 12 O -0.60 -16.25 15.50 5.54 0.09 -16.17 16 13 N -0.56 -14.39 5.18 -10.96 -0.06 -14.44 16 14 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 15 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 18 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.08 -0.96 7.95 -39.61 -0.31 -1.28 16 23 C -0.15 -1.84 9.99 -39.44 -0.39 -2.24 16 24 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 25 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 28 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 30 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 31 H 0.06 0.81 6.27 -51.93 -0.33 0.48 16 32 H 0.06 1.00 7.56 -51.93 -0.39 0.60 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.39 9.70 7.32 -40.82 -0.30 9.40 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.13 1.47 8.04 -52.48 -0.42 1.05 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -31.69 313.62 -6.34 -38.03 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.02 Total: 9.33 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.58 Total: -9.77 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.67 Total: -38.42 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.12 Total: -20.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.69 -6.34 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123099216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.022 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds