Wall clock time and date at job start Sun Mar 29 2020 23:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 C 1.52998 * 109.46943 * 119.99471 * 2 1 3 5 5 O 1.42900 * 109.47171 * 65.00368 * 4 2 1 6 6 C 1.35899 * 117.00480 * 179.97438 * 5 4 2 7 7 C 1.38874 * 120.00877 * 359.72693 * 6 5 4 8 8 C 1.38215 * 120.10731 * 179.74496 * 7 6 5 9 9 C 1.38115 * 120.13690 * 0.54776 * 8 7 6 10 10 C 1.39064 * 120.02532 * 359.70724 * 9 8 7 11 11 N 1.39519 * 120.05535 * 180.02562 * 10 9 8 12 12 C 1.34772 * 119.99732 * 213.39901 * 11 10 9 13 13 O 1.21741 * 120.00465 * 5.27674 * 12 11 10 14 14 C 1.46163 * 119.99738 * 185.27568 * 12 11 10 15 15 H 1.08005 * 119.99999 * 359.97438 * 14 12 11 16 16 C 1.40121 * 119.99997 * 179.97438 * 14 12 11 17 17 N 1.30639 * 120.00254 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00127 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47288 * 59.99480 * 18 16 14 20 20 H 1.48499 * 109.47327 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47111 * 300.00047 * 18 16 14 22 22 C 1.38523 * 120.01815 * 179.97438 * 6 5 4 23 23 H 1.09003 * 109.46894 * 60.00737 * 1 2 3 24 24 H 1.09004 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47183 * 300.00393 * 1 2 3 26 26 H 1.09002 * 109.47620 * 239.99585 * 2 1 3 27 27 H 1.08995 * 109.46640 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46737 * 299.99359 * 3 2 1 29 29 H 1.08993 * 109.46807 * 59.99586 * 3 2 1 30 30 H 1.09001 * 109.47433 * 184.99861 * 4 2 1 31 31 H 1.08996 * 109.47359 * 305.00543 * 4 2 1 32 32 H 1.07998 * 119.94624 * 0.02562 * 7 6 5 33 33 H 1.08002 * 119.93105 * 180.27895 * 8 7 6 34 34 H 1.07998 * 119.98881 * 179.72465 * 9 8 7 35 35 H 0.96999 * 119.99671 * 33.39343 * 11 10 9 36 36 H 0.97000 * 120.00303 * 179.97438 * 17 16 14 37 37 H 1.08007 * 120.06194 * 359.95860 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 -2.0980 1.1922 6 6 2.0405 -2.8856 2.2330 7 6 2.7666 -2.3439 3.2856 8 6 3.1481 -3.1418 4.3478 9 6 2.8185 -4.4830 4.3610 10 6 2.0962 -5.0324 3.3073 11 7 1.7625 -6.3871 3.3203 12 6 1.7002 -7.0767 2.1641 13 8 2.0277 -6.5445 1.1193 14 6 1.2393 -8.4638 2.1645 15 1 0.9491 -8.9362 3.0914 16 6 1.1740 -9.1808 0.9624 17 7 1.5245 -8.6093 -0.1589 18 14 0.5843 -10.9532 0.9628 19 1 -0.8017 -11.0137 1.4924 20 1 0.6073 -11.4829 -0.4243 21 1 1.4781 -11.7720 1.8207 22 6 1.7067 -4.2300 2.2420 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8935 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1263 -0.6443 1.2953 31 1 1.6053 -0.2616 2.1370 32 1 3.0297 -1.2965 3.2764 33 1 3.7088 -2.7166 5.1671 34 1 3.1217 -5.1052 5.1900 35 1 1.5754 -6.8324 4.1614 36 1 1.4797 -9.1057 -0.9910 37 1 1.1450 -4.6535 1.4225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132086158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:00 Heat of formation + Delta-G solvation = -89.764804 kcal Electronic energy + Delta-G solvation = -19224.528829 eV Core-core repulsion = 16158.555612 eV Total energy + Delta-G solvation = -3065.973217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26544 -39.98556 -38.16225 -36.22086 -35.08300 -34.45086 -31.35263 -30.30676 -28.29472 -28.03604 -27.36973 -24.08174 -23.10460 -21.81600 -20.96103 -19.62298 -18.94003 -17.64250 -17.18581 -16.88284 -16.82623 -16.40267 -15.95367 -15.29024 -15.18173 -14.73908 -14.44270 -14.21832 -14.11570 -13.65593 -13.34303 -13.18632 -13.01466 -12.77336 -12.74813 -12.58919 -12.34235 -12.10876 -12.08287 -12.03154 -11.63176 -11.50788 -11.03614 -10.78185 -9.96201 -9.22251 -8.77543 -8.37797 -6.97234 0.49202 0.58103 1.38668 1.42551 1.54796 2.17662 2.25614 2.37162 2.89413 3.00704 3.56768 3.78740 3.86248 4.03642 4.11854 4.20611 4.36514 4.41094 4.50910 4.57601 4.68039 4.71546 4.78577 4.93417 4.97351 4.99891 5.17824 5.23225 5.33694 5.38953 5.41596 5.50295 5.53661 5.72757 5.78810 6.15447 6.32313 6.60669 6.75635 7.32566 8.33867 8.55691 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.004402 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.274083 B = 6358.641697 C = 7278.772453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.056 3.944 5 O -0.340 6.340 6 C 0.138 3.862 7 C -0.240 4.240 8 C -0.049 4.049 9 C -0.205 4.205 10 C 0.196 3.804 11 N -0.691 5.691 12 C 0.526 3.474 13 O -0.607 6.607 14 C -0.566 4.566 15 H 0.096 0.904 16 C 0.027 3.973 17 N -0.815 5.815 18 Si 1.005 2.995 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.251 1.251 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.410 0.590 36 H 0.278 0.722 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 15.121 7.283 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.193 4.193 4 C -0.018 4.018 5 O -0.255 6.255 6 C 0.092 3.908 7 C -0.260 4.260 8 C -0.067 4.067 9 C -0.226 4.226 10 C 0.098 3.902 11 N -0.336 5.336 12 C 0.333 3.667 13 O -0.492 6.492 14 C -0.602 4.602 15 H 0.114 0.886 16 C -0.189 4.189 17 N -0.444 5.444 18 Si 0.823 3.177 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.174 1.174 22 C -0.226 4.226 23 H 0.089 0.911 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.981 15.368 6.146 16.581 hybrid contribution -0.347 -1.134 -0.133 1.193 sum 0.634 14.235 6.013 15.465 Atomic orbital electron populations 1.21805 0.94620 1.01111 1.02767 1.21199 0.96902 0.97239 0.96357 1.21729 1.01562 0.92609 1.03440 1.23191 1.00258 0.78042 1.00334 1.86058 1.74754 1.22567 1.42082 1.18855 0.94578 0.89454 0.87897 1.21372 1.06656 1.02133 0.95832 1.21107 0.96174 0.91869 0.97546 1.21122 1.03573 0.97479 1.00403 1.17927 0.93353 0.84220 0.94734 1.43719 1.71795 1.07129 1.10951 1.18815 0.78269 0.87978 0.81665 1.90621 1.54028 1.71858 1.32709 1.21408 1.46603 0.95888 0.96289 0.88620 1.27080 0.92518 1.05426 0.93851 1.70165 1.35048 1.39345 0.99866 0.84968 0.79838 0.74474 0.78411 1.17717 1.19876 1.17442 1.20277 1.08611 0.92005 1.01739 0.91149 0.94826 0.91565 0.91761 0.91698 0.90835 0.91122 0.91139 0.90428 0.82714 0.81331 0.83548 0.75370 0.91243 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.09 71.98 0.65 -2.58 16 2 C -0.10 -2.15 3.16 -10.79 -0.03 -2.18 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.28 16 4 C 0.06 1.42 4.12 71.98 0.30 1.71 16 5 O -0.34 -12.90 9.67 -92.41 -0.89 -13.80 16 6 C 0.14 5.53 6.68 22.49 0.15 5.68 16 7 C -0.24 -7.27 9.04 22.42 0.20 -7.07 16 8 C -0.05 -1.34 10.03 22.23 0.22 -1.12 16 9 C -0.20 -6.89 9.96 22.44 0.22 -6.67 16 10 C 0.20 8.79 6.27 38.28 0.24 9.03 16 11 N -0.69 -33.11 5.32 -307.60 -1.64 -34.75 16 12 C 0.53 31.42 7.47 86.30 0.64 32.06 16 13 O -0.61 -41.81 12.70 -4.48 -0.06 -41.87 16 14 C -0.57 -32.18 9.54 24.79 0.24 -31.95 16 15 H 0.10 4.77 7.85 -2.91 -0.02 4.74 16 16 C 0.03 1.53 5.50 85.33 0.47 2.00 16 17 N -0.82 -50.37 11.82 21.85 0.26 -50.12 16 18 Si 1.00 40.65 29.56 68.60 2.03 42.67 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 22 C -0.20 -10.07 8.59 22.51 0.19 -9.88 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.03 0.95 7.82 -2.38 -0.02 0.93 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.59 7.65 -2.39 -0.02 1.57 16 31 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 32 H 0.16 3.45 6.29 -2.91 -0.02 3.43 16 33 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.41 16.22 8.79 -92.71 -0.82 15.41 16 36 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 37 H 0.09 5.28 6.42 -2.91 -0.02 5.27 16 Total: -1.00 -80.56 314.79 4.12 -76.44 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.26 Total: 33.67 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.16 Total: -12.26 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.38 Total: -84.87 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -0.95 Total: -55.67 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -80.56 4.12 -76.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132086158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.327 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds