Wall clock time and date at job start Sun Mar 29 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46831 * 2 1 4 4 H 1.09001 * 109.47306 * 55.00243 * 3 2 1 5 5 C 1.53006 * 109.47203 * 175.00247 * 3 2 1 6 6 O 1.42905 * 109.46992 * 294.99994 * 3 2 1 7 7 C 1.35906 * 116.99631 * 154.96625 * 6 3 2 8 8 C 1.38862 * 119.97375 * 5.26425 * 7 6 3 9 9 C 1.37968 * 120.03118 * 179.97438 * 8 7 6 10 10 C 1.39105 * 119.97005 * 0.02562 * 9 8 7 11 11 N 1.39513 * 120.03034 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00385 * 144.04169 * 11 10 9 13 13 O 1.21780 * 119.99682 * 4.78173 * 12 11 10 14 14 C 1.41770 * 120.00454 * 184.78230 * 12 11 10 15 15 H 1.08003 * 119.99858 * 0.02562 * 14 12 11 16 16 C 1.40131 * 120.00063 * 179.97438 * 14 12 11 17 17 N 1.30623 * 120.00390 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99998 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46779 * 90.00030 * 18 16 14 20 20 H 1.48491 * 109.47380 * 209.99798 * 18 16 14 21 21 H 1.48501 * 109.46948 * 330.00626 * 18 16 14 22 22 C 1.39105 * 119.94195 * 0.27931 * 10 9 8 23 23 C 1.37965 * 119.96963 * 359.42139 * 22 10 9 24 24 H 1.08996 * 109.47214 * 60.00347 * 1 2 3 25 25 H 1.08999 * 109.46721 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47083 * 299.99775 * 1 2 3 27 27 H 1.08998 * 109.47083 * 240.00225 * 2 1 3 28 28 H 1.09001 * 109.47229 * 120.00128 * 2 1 3 29 29 H 1.08998 * 109.46975 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.46603 * 300.00126 * 5 3 2 31 31 H 1.09001 * 109.46993 * 59.99804 * 5 3 2 32 32 H 1.08007 * 119.98738 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.01948 * 180.02562 * 9 8 7 34 34 H 0.97008 * 120.00078 * 324.03836 * 11 10 9 35 35 H 0.97000 * 120.00527 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.01613 * 179.69621 * 22 10 9 37 37 H 1.07999 * 119.98927 * 180.27694 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.5513 3.4358 -1.2002 8 6 1.9071 4.1434 -0.0597 9 6 1.7958 5.5184 -0.0374 10 6 1.3264 6.1958 -1.1580 11 7 1.2138 7.5862 -1.1370 12 6 1.4765 8.3005 -2.2493 13 8 1.7271 7.7288 -3.2949 14 6 1.4612 9.7173 -2.2021 15 1 1.2394 10.2244 -1.2746 16 6 1.7349 10.4599 -3.3585 17 7 2.0037 9.8468 -4.4801 18 14 1.7154 12.3269 -3.2961 19 1 3.0722 12.8249 -2.9551 20 1 1.3101 12.8622 -4.6205 21 1 0.7486 12.7775 -2.2629 22 6 0.9642 5.4852 -2.2977 23 6 1.0823 4.1108 -2.3195 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9281 2.4721 0.1252 30 1 3.8532 0.9571 1.0570 31 1 3.9994 0.9054 -0.7162 32 1 2.2713 3.6172 0.8104 33 1 2.0731 6.0686 0.8496 34 1 0.9464 8.0390 -0.3218 35 1 2.1935 10.3608 -5.2806 36 1 0.5949 6.0096 -3.1667 37 1 0.8054 3.5592 -3.2058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133078067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:37 Heat of formation + Delta-G solvation = -61.982768 kcal Electronic energy + Delta-G solvation = -19257.698810 eV Core-core repulsion = 16192.930313 eV Total energy + Delta-G solvation = -3064.768497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93949 -38.44431 -36.48467 -34.20947 -33.00220 -32.26957 -30.64253 -29.78132 -28.29669 -26.18425 -23.98478 -22.83612 -21.82214 -20.78118 -19.58542 -17.96793 -17.49172 -16.16110 -15.64173 -15.44330 -14.95342 -14.55622 -14.07343 -13.95708 -13.61103 -13.35419 -13.18082 -12.78173 -12.67562 -12.38329 -12.04470 -11.90711 -11.82659 -11.56712 -11.26678 -11.20033 -11.07066 -10.83248 -10.62026 -10.51221 -10.33082 -10.20418 -9.06822 -8.61285 -8.42644 -7.65804 -6.76712 -6.34815 -4.87644 1.95539 2.10466 3.06168 3.13467 3.16904 3.50080 3.99603 4.28371 4.53900 4.60904 4.76797 4.83504 4.94725 5.16170 5.33544 5.37771 5.42447 5.46544 5.56398 5.72847 5.76122 5.81314 5.89722 5.98371 6.05247 6.11625 6.16959 6.36193 6.60059 6.71582 6.85347 7.17573 7.24975 7.36381 7.84135 7.91730 8.07721 8.28728 8.82660 9.34306 10.41252 10.62549 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053547 B = 0.003637 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.777507 B = 7696.641993 C = 7810.803922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.082 3.918 4 H 0.070 0.930 5 C -0.181 4.181 6 O -0.313 6.313 7 C 0.082 3.918 8 C -0.190 4.190 9 C -0.140 4.140 10 C 0.158 3.842 11 N -0.704 5.704 12 C 0.545 3.455 13 O -0.569 6.569 14 C -0.540 4.540 15 H 0.069 0.931 16 C 0.088 3.912 17 N -0.748 5.748 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.090 4.090 23 C -0.132 4.132 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.390 0.610 35 H 0.272 0.728 36 H 0.148 0.852 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -13.271 9.924 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.025 3.975 4 H 0.088 0.912 5 C -0.238 4.238 6 O -0.228 6.228 7 C 0.037 3.963 8 C -0.209 4.209 9 C -0.162 4.162 10 C 0.060 3.940 11 N -0.348 5.348 12 C 0.354 3.646 13 O -0.452 6.452 14 C -0.575 4.575 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.376 5.376 18 Si 0.736 3.264 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.111 4.111 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.223 0.777 35 H 0.083 0.917 36 H 0.165 0.835 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.814 -13.692 8.773 16.282 hybrid contribution 0.114 1.261 0.745 1.469 sum -0.700 -12.431 9.517 15.671 Atomic orbital electron populations 1.21751 0.95234 1.01498 1.02569 1.21611 0.96779 0.94380 1.02752 1.22356 0.94668 0.93583 0.86876 0.91189 1.22380 0.95767 1.03287 1.02365 1.86053 1.84773 1.17412 1.34593 1.18844 1.00633 0.81796 0.95045 1.20850 1.07649 0.94531 0.97871 1.20707 1.02785 0.93697 0.98975 1.17912 0.96532 0.85228 0.94308 1.44052 1.71909 1.02685 1.16154 1.17046 0.78005 0.88111 0.81438 1.90636 1.53684 1.71732 1.29178 1.20042 1.49963 0.90497 0.97032 0.91246 1.25756 0.92560 1.00509 0.94642 1.70007 1.30634 1.36968 0.99975 0.86294 0.79293 0.82350 0.78431 1.19554 1.20252 1.18715 1.21358 0.98493 0.91913 0.99289 1.20318 1.04091 0.93750 0.96958 0.91752 0.92759 0.92896 0.90985 0.90528 0.91572 0.91549 0.91647 0.86235 0.86485 0.77683 0.91684 0.83471 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.08 16 2 C -0.12 -1.10 5.64 -26.73 -0.15 -1.25 16 3 C 0.08 0.95 2.22 -26.73 -0.06 0.89 16 4 H 0.07 0.79 6.29 -51.93 -0.33 0.46 16 5 C -0.18 -1.90 9.17 37.16 0.34 -1.56 16 6 O -0.31 -4.80 9.33 -19.45 -0.18 -4.99 16 7 C 0.08 1.42 6.61 -39.12 -0.26 1.16 16 8 C -0.19 -3.09 8.24 -39.45 -0.32 -3.42 16 9 C -0.14 -2.51 9.97 -39.36 -0.39 -2.90 16 10 C 0.16 3.40 6.28 -83.72 -0.53 2.87 16 11 N -0.70 -16.07 5.31 -12.40 -0.07 -16.13 16 12 C 0.55 15.23 7.41 -14.91 -0.11 15.12 16 13 O -0.57 -17.81 12.37 5.12 0.06 -17.75 16 14 C -0.54 -14.77 9.31 -37.52 -0.35 -15.12 16 15 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 16 C 0.09 2.38 5.50 -17.36 -0.10 2.28 16 17 N -0.75 -21.68 11.73 55.55 0.65 -21.03 16 18 Si 0.91 19.40 29.56 -169.99 -5.02 14.38 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.09 -1.97 8.68 -39.36 -0.34 -2.31 16 23 C -0.13 -2.52 9.98 -39.45 -0.39 -2.91 16 24 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 1.61 5.43 -52.48 -0.28 1.32 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.39 7.62 8.78 -40.82 -0.36 7.26 16 35 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 36 H 0.15 3.64 6.30 -52.48 -0.33 3.31 16 37 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -32.41 311.09 -7.16 -39.57 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.99 Total: 9.49 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.30 Total: -8.23 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.59 Total: -37.16 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.12 Total: -22.74 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.41 -7.16 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133078067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.408 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds