Wall clock time and date at job start Sun Mar 29 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46831 * 2 1 4 4 H 1.09001 * 109.47306 * 55.00243 * 3 2 1 5 5 C 1.53006 * 109.47203 * 175.00247 * 3 2 1 6 6 O 1.42905 * 109.46992 * 294.99994 * 3 2 1 7 7 C 1.35906 * 116.99631 * 154.96625 * 6 3 2 8 8 C 1.38862 * 119.97375 * 5.26425 * 7 6 3 9 9 C 1.37968 * 120.03118 * 179.97438 * 8 7 6 10 10 C 1.39105 * 119.97005 * 0.02562 * 9 8 7 11 11 N 1.39513 * 120.03034 * 180.02562 * 10 9 8 12 12 C 1.34773 * 120.00385 * 144.04169 * 11 10 9 13 13 O 1.21780 * 119.99682 * 4.78173 * 12 11 10 14 14 C 1.41770 * 120.00454 * 184.78230 * 12 11 10 15 15 H 1.08003 * 119.99858 * 0.02562 * 14 12 11 16 16 C 1.40131 * 120.00063 * 179.97438 * 14 12 11 17 17 N 1.30623 * 120.00390 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99998 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46779 * 90.00030 * 18 16 14 20 20 H 1.48491 * 109.47380 * 209.99798 * 18 16 14 21 21 H 1.48501 * 109.46948 * 330.00626 * 18 16 14 22 22 C 1.39105 * 119.94195 * 0.27931 * 10 9 8 23 23 C 1.37965 * 119.96963 * 359.42139 * 22 10 9 24 24 H 1.08996 * 109.47214 * 60.00347 * 1 2 3 25 25 H 1.08999 * 109.46721 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47083 * 299.99775 * 1 2 3 27 27 H 1.08998 * 109.47083 * 240.00225 * 2 1 3 28 28 H 1.09001 * 109.47229 * 120.00128 * 2 1 3 29 29 H 1.08998 * 109.46975 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.46603 * 300.00126 * 5 3 2 31 31 H 1.09001 * 109.46993 * 59.99804 * 5 3 2 32 32 H 1.08007 * 119.98738 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.01948 * 180.02562 * 9 8 7 34 34 H 0.97008 * 120.00078 * 324.03836 * 11 10 9 35 35 H 0.97000 * 120.00527 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.01613 * 179.69621 * 22 10 9 37 37 H 1.07999 * 119.98927 * 180.27694 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.5513 3.4358 -1.2002 8 6 1.9071 4.1434 -0.0597 9 6 1.7958 5.5184 -0.0374 10 6 1.3264 6.1958 -1.1580 11 7 1.2138 7.5862 -1.1370 12 6 1.4765 8.3005 -2.2493 13 8 1.7271 7.7288 -3.2949 14 6 1.4612 9.7173 -2.2021 15 1 1.2394 10.2244 -1.2746 16 6 1.7349 10.4599 -3.3585 17 7 2.0037 9.8468 -4.4801 18 14 1.7154 12.3269 -3.2961 19 1 3.0722 12.8249 -2.9551 20 1 1.3101 12.8622 -4.6205 21 1 0.7486 12.7775 -2.2629 22 6 0.9642 5.4852 -2.2977 23 6 1.0823 4.1108 -2.3195 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9281 2.4721 0.1252 30 1 3.8532 0.9571 1.0570 31 1 3.9994 0.9054 -0.7162 32 1 2.2713 3.6172 0.8104 33 1 2.0731 6.0686 0.8496 34 1 0.9464 8.0390 -0.3218 35 1 2.1935 10.3608 -5.2806 36 1 0.5949 6.0096 -3.1667 37 1 0.8054 3.5592 -3.2058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133078067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:37 Heat of formation + Delta-G solvation = -83.110765 kcal Electronic energy + Delta-G solvation = -19258.614989 eV Core-core repulsion = 16192.930313 eV Total energy + Delta-G solvation = -3065.684676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31087 -40.10133 -38.13110 -35.46949 -34.73169 -34.17561 -31.99272 -30.75273 -30.03571 -28.05491 -24.92601 -24.13759 -23.40059 -22.14525 -21.13428 -19.42840 -19.19460 -17.80063 -17.58524 -16.78474 -16.16998 -15.87193 -15.66560 -15.18199 -14.94665 -14.68222 -14.60949 -14.22661 -13.99811 -13.88246 -13.54303 -13.10965 -13.07984 -12.91694 -12.72331 -12.68706 -12.56202 -12.02576 -11.98024 -11.91264 -11.63650 -11.36398 -10.99220 -10.37084 -10.01024 -9.71417 -8.42328 -8.35567 -6.99946 0.45652 0.57296 1.39777 1.40793 1.57147 2.21578 2.35726 2.37936 2.88775 3.07083 3.65432 3.77762 3.94418 3.97892 4.06036 4.16572 4.36666 4.48092 4.51252 4.64314 4.71617 4.78460 4.82430 5.01766 5.08692 5.10228 5.14429 5.22696 5.25823 5.32757 5.37937 5.45741 5.58914 5.77548 5.90637 6.20322 6.40503 6.66149 6.74968 7.44655 8.41020 8.59128 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053547 B = 0.003637 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.777507 B = 7696.641993 C = 7810.803922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.069 3.931 4 H 0.081 0.919 5 C -0.179 4.179 6 O -0.323 6.323 7 C 0.097 3.903 8 C -0.179 4.179 9 C -0.124 4.124 10 C 0.121 3.879 11 N -0.696 5.696 12 C 0.529 3.471 13 O -0.616 6.616 14 C -0.567 4.567 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.803 5.803 18 Si 1.003 2.997 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.247 1.247 22 C -0.113 4.113 23 C -0.145 4.145 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.278 0.722 36 H 0.105 0.895 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -13.844 12.928 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C 0.014 3.986 4 H 0.098 0.902 5 C -0.236 4.236 6 O -0.238 6.238 7 C 0.051 3.949 8 C -0.197 4.197 9 C -0.145 4.145 10 C 0.024 3.976 11 N -0.341 5.341 12 C 0.338 3.662 13 O -0.504 6.504 14 C -0.602 4.602 15 H 0.109 0.891 16 C -0.187 4.187 17 N -0.431 5.431 18 Si 0.821 3.179 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.170 1.170 22 C -0.134 4.134 23 C -0.164 4.164 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.242 -14.313 11.838 18.576 hybrid contribution -0.065 1.175 -0.112 1.182 sum -0.307 -13.139 11.726 17.613 Atomic orbital electron populations 1.21764 0.95529 1.02302 1.01598 1.21660 0.96482 0.92918 1.04067 1.22798 0.95710 0.94628 0.85474 0.90152 1.22384 0.94592 1.02747 1.03880 1.86073 1.84471 1.16036 1.37196 1.18849 0.98651 0.83003 0.94415 1.21234 1.05992 0.93919 0.98590 1.20988 1.00702 0.94423 0.98350 1.18155 0.99159 0.84580 0.95703 1.43581 1.71708 1.03438 1.15417 1.17439 0.77760 0.89001 0.81960 1.90600 1.55749 1.72757 1.31271 1.20588 1.50347 0.90799 0.98438 0.89074 1.27050 0.91126 1.06893 0.93670 1.70171 1.31938 1.39848 1.01193 0.84946 0.79937 0.74043 0.78946 1.18500 1.19674 1.16998 1.21071 1.00525 0.93200 0.98649 1.20322 1.04920 0.92804 0.98393 0.94160 0.91174 0.92402 0.91324 0.87502 0.92929 0.88464 0.92094 0.82329 0.83421 0.75957 0.91150 0.87697 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.81 71.98 0.71 -1.84 16 2 C -0.11 -1.75 5.64 30.59 0.17 -1.58 16 3 C 0.07 1.38 2.22 30.60 0.07 1.45 16 4 H 0.08 1.46 6.29 -2.39 -0.02 1.44 16 5 C -0.18 -3.13 9.17 71.98 0.66 -2.47 16 6 O -0.32 -9.36 9.33 -92.49 -0.86 -10.23 16 7 C 0.10 3.24 6.61 22.57 0.15 3.39 16 8 C -0.18 -5.34 8.24 22.36 0.18 -5.16 16 9 C -0.12 -4.21 9.97 22.41 0.22 -3.98 16 10 C 0.12 5.30 6.28 38.34 0.24 5.54 16 11 N -0.70 -32.69 5.31 -311.33 -1.65 -34.34 16 12 C 0.53 30.91 7.41 85.12 0.63 31.55 16 13 O -0.62 -41.16 12.37 -4.61 -0.06 -41.22 16 14 C -0.57 -31.64 9.31 23.60 0.22 -31.42 16 15 H 0.09 4.50 7.85 -2.91 -0.02 4.47 16 16 C 0.03 1.67 5.50 85.33 0.47 2.14 16 17 N -0.80 -48.42 11.73 21.85 0.26 -48.17 16 18 Si 1.00 39.84 29.56 68.60 2.03 41.86 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 22 C -0.11 -5.30 8.68 22.41 0.19 -5.11 16 23 C -0.15 -5.75 9.98 22.36 0.22 -5.53 16 24 H 0.04 0.85 7.82 -2.39 -0.02 0.83 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.07 6.93 -2.39 -0.02 1.06 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.16 3.52 5.43 -2.91 -0.02 3.51 16 33 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 34 H 0.41 15.89 8.78 -92.70 -0.81 15.08 16 35 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 36 H 0.10 5.75 6.30 -2.91 -0.02 5.73 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -75.18 311.09 4.12 -71.06 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.27 Total: 34.05 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.14 Total: -13.02 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.40 Total: -82.51 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.92 Total: -51.45 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Total: -75.18 4.12 -71.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133078067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.049 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds