Wall clock time and date at job start Sun Mar 29 2020 23:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 H 1.09006 * 109.47123 * 304.99533 * 3 2 1 5 5 C 1.53008 * 109.47166 * 185.00252 * 3 2 1 6 6 O 1.42891 * 109.47699 * 64.99603 * 3 2 1 7 7 C 1.35904 * 117.00687 * 204.61014 * 6 3 2 8 8 C 1.38863 * 119.97381 * 174.75817 * 7 6 3 9 9 C 1.37972 * 120.02689 * 180.27934 * 8 7 6 10 10 C 1.39110 * 119.96811 * 359.45272 * 9 8 7 11 11 N 1.39518 * 120.02476 * 180.29300 * 10 9 8 12 12 C 1.34785 * 119.99721 * 33.24836 * 11 10 9 13 13 O 1.21775 * 120.00126 * 5.22620 * 12 11 10 14 14 C 1.41770 * 119.99407 * 185.23416 * 12 11 10 15 15 H 1.07999 * 120.00561 * 359.97438 * 14 12 11 16 16 C 1.40136 * 119.99447 * 179.97438 * 14 12 11 17 17 N 1.30636 * 120.00576 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99940 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47093 * 90.00072 * 18 16 14 20 20 H 1.48505 * 109.47697 * 209.99988 * 18 16 14 21 21 H 1.48500 * 109.47400 * 330.00103 * 18 16 14 22 22 C 1.39098 * 119.94403 * 0.27559 * 10 9 8 23 23 C 1.37965 * 119.97409 * 359.97438 * 22 10 9 24 24 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47013 * 300.00571 * 1 2 3 26 26 H 1.09001 * 109.46982 * 60.00299 * 1 2 3 27 27 H 1.08999 * 109.47516 * 239.99466 * 2 1 3 28 28 H 1.09001 * 109.46982 * 119.99700 * 2 1 3 29 29 H 1.08995 * 109.47212 * 59.99610 * 5 3 2 30 30 H 1.08996 * 109.47132 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.46649 * 299.99373 * 5 3 2 32 32 H 1.07999 * 119.98669 * 0.03013 * 8 7 6 33 33 H 1.08001 * 120.01335 * 179.72031 * 9 8 7 34 34 H 0.96992 * 120.00369 * 213.23631 * 11 10 9 35 35 H 0.96998 * 120.00355 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.01464 * 180.02562 * 22 10 9 37 37 H 1.08002 * 119.98995 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 8 1.6619 2.0815 1.2209 7 6 1.5600 3.4366 1.2024 8 6 1.0923 4.1124 2.3216 9 6 0.9829 5.4877 2.3020 10 6 1.3523 6.1980 1.1644 11 7 1.2480 7.5891 1.1455 12 6 1.4537 8.2957 2.2747 13 8 1.8232 7.7304 3.2879 14 6 1.2396 9.6972 2.2827 15 1 0.9121 10.1986 1.3840 16 6 1.4529 10.4317 3.4568 17 7 1.8485 9.8252 4.5441 18 14 1.1716 12.2784 3.4674 19 1 -0.2374 12.5624 3.8411 20 1 2.0827 12.9125 4.4538 21 1 1.4456 12.8286 2.1155 22 6 1.8260 5.5201 0.0460 23 6 1.9296 4.1445 0.0663 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8532 0.9570 -1.0571 30 1 3.9281 2.4720 -0.1262 31 1 3.9994 0.9054 0.7161 32 1 0.8101 3.5611 3.2064 33 1 0.6148 6.0128 3.1710 34 1 1.0276 8.0478 0.3198 35 1 1.9958 10.3336 5.3569 36 1 2.1135 6.0705 -0.8377 37 1 2.2977 3.6180 -0.8018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133078263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:39 Heat of formation + Delta-G solvation = -62.446993 kcal Electronic energy + Delta-G solvation = -19257.287488 eV Core-core repulsion = 16192.498860 eV Total energy + Delta-G solvation = -3064.788627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93914 -38.45122 -36.48668 -34.20980 -33.00621 -32.27263 -30.65041 -29.77718 -28.29490 -26.19361 -23.98059 -22.84952 -21.82060 -20.80139 -19.56749 -17.96617 -17.49311 -16.16435 -15.65559 -15.43094 -14.95027 -14.56051 -14.05933 -13.97218 -13.61464 -13.35608 -13.19004 -12.77570 -12.63569 -12.38785 -12.03134 -11.93699 -11.83750 -11.57805 -11.27154 -11.18223 -11.08734 -10.83197 -10.61621 -10.53548 -10.33039 -10.19803 -9.07913 -8.64511 -8.42812 -7.68671 -6.73050 -6.35623 -4.88236 1.95347 2.10761 3.05965 3.13256 3.16647 3.50431 3.99227 4.26555 4.55332 4.61209 4.76105 4.83603 4.94968 5.16432 5.33634 5.37447 5.42582 5.46699 5.56506 5.73934 5.76311 5.81465 5.89568 5.97477 6.05174 6.11344 6.17093 6.35094 6.58794 6.71507 6.85505 7.14599 7.24539 7.34626 7.84518 7.91638 8.07452 8.27775 8.82035 9.33454 10.40649 10.61908 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053877 B = 0.003630 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.579641 B = 7711.631878 C = 7814.458279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.082 3.918 4 H 0.070 0.930 5 C -0.181 4.181 6 O -0.313 6.313 7 C 0.080 3.920 8 C -0.129 4.129 9 C -0.091 4.091 10 C 0.162 3.838 11 N -0.703 5.703 12 C 0.544 3.456 13 O -0.568 6.568 14 C -0.540 4.540 15 H 0.069 0.931 16 C 0.088 3.912 17 N -0.748 5.748 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.143 4.143 23 C -0.188 4.188 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.390 0.610 35 H 0.272 0.728 36 H 0.117 0.883 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -13.228 -9.947 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.025 3.975 4 H 0.088 0.912 5 C -0.238 4.238 6 O -0.228 6.228 7 C 0.035 3.965 8 C -0.149 4.149 9 C -0.112 4.112 10 C 0.064 3.936 11 N -0.347 5.347 12 C 0.353 3.647 13 O -0.451 6.451 14 C -0.575 4.575 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.376 5.376 18 Si 0.737 3.263 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.165 4.165 23 C -0.207 4.207 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.223 0.777 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.768 -13.641 -8.813 16.259 hybrid contribution -0.023 1.262 -0.703 1.445 sum -0.791 -12.379 -9.517 15.635 Atomic orbital electron populations 1.21751 0.95233 1.01495 1.02573 1.21608 0.96781 0.94372 1.02750 1.22348 0.94651 0.93583 0.86869 0.91222 1.22385 0.95791 1.03294 1.02364 1.86045 1.84806 1.17331 1.34654 1.18823 1.00860 0.81774 0.95083 1.20287 1.03979 0.93649 0.96938 1.21220 0.98831 0.92009 0.99159 1.17908 0.96147 0.85253 0.94305 1.44109 1.73537 1.02678 1.14342 1.17047 0.78614 0.87953 0.81073 1.90654 1.50828 1.71608 1.32041 1.20055 1.47502 0.92010 0.97946 0.91233 1.25762 0.92622 1.00351 0.94764 1.70012 1.30124 1.36912 1.00510 0.86292 0.78863 0.82200 0.78992 1.19510 1.20265 1.18734 1.20664 1.03138 0.93699 0.99010 1.20851 1.07377 0.94502 0.97947 0.92761 0.91747 0.92897 0.90531 0.90986 0.91561 0.91559 0.91642 0.85979 0.83789 0.77684 0.91672 0.86500 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.08 16 2 C -0.12 -1.10 5.64 -26.73 -0.15 -1.25 16 3 C 0.08 0.95 2.23 -26.73 -0.06 0.89 16 4 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 5 C -0.18 -1.90 9.16 37.16 0.34 -1.56 16 6 O -0.31 -4.81 9.33 -19.44 -0.18 -4.99 16 7 C 0.08 1.38 6.60 -39.12 -0.26 1.12 16 8 C -0.13 -2.47 9.98 -39.45 -0.39 -2.86 16 9 C -0.09 -2.01 8.65 -39.36 -0.34 -2.35 16 10 C 0.16 3.48 6.28 -83.72 -0.53 2.96 16 11 N -0.70 -16.05 5.31 -12.40 -0.07 -16.12 16 12 C 0.54 15.19 7.31 -14.91 -0.11 15.09 16 13 O -0.57 -17.82 12.54 5.12 0.06 -17.76 16 14 C -0.54 -14.75 9.31 -37.52 -0.35 -15.10 16 15 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 16 C 0.09 2.36 5.50 -17.35 -0.10 2.27 16 17 N -0.75 -21.65 11.73 55.55 0.65 -20.99 16 18 Si 0.91 19.38 29.56 -169.99 -5.02 14.35 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.14 -2.56 9.96 -39.36 -0.39 -2.96 16 23 C -0.19 -3.06 8.22 -39.45 -0.32 -3.38 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.78 6.86 -51.93 -0.36 0.43 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.14 3.57 6.40 -52.49 -0.34 3.23 16 34 H 0.39 7.62 8.77 -40.82 -0.36 7.26 16 35 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 36 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.12 1.61 5.40 -52.49 -0.28 1.32 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -32.44 311.14 -7.16 -39.60 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.00 Total: 9.43 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.29 Total: -8.21 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.59 Total: -37.11 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.12 Total: -22.75 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.44 -7.16 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133078263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.852 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds