Wall clock time and date at job start Sun Mar 29 2020 23:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 H 1.09006 * 109.47123 * 304.99533 * 3 2 1 5 5 C 1.53008 * 109.47166 * 185.00252 * 3 2 1 6 6 O 1.42891 * 109.47699 * 64.99603 * 3 2 1 7 7 C 1.35904 * 117.00687 * 204.61014 * 6 3 2 8 8 C 1.38863 * 119.97381 * 174.75817 * 7 6 3 9 9 C 1.37972 * 120.02689 * 180.27934 * 8 7 6 10 10 C 1.39110 * 119.96811 * 359.45272 * 9 8 7 11 11 N 1.39518 * 120.02476 * 180.29300 * 10 9 8 12 12 C 1.34785 * 119.99721 * 33.24836 * 11 10 9 13 13 O 1.21775 * 120.00126 * 5.22620 * 12 11 10 14 14 C 1.41770 * 119.99407 * 185.23416 * 12 11 10 15 15 H 1.07999 * 120.00561 * 359.97438 * 14 12 11 16 16 C 1.40136 * 119.99447 * 179.97438 * 14 12 11 17 17 N 1.30636 * 120.00576 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99940 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47093 * 90.00072 * 18 16 14 20 20 H 1.48505 * 109.47697 * 209.99988 * 18 16 14 21 21 H 1.48500 * 109.47400 * 330.00103 * 18 16 14 22 22 C 1.39098 * 119.94403 * 0.27559 * 10 9 8 23 23 C 1.37965 * 119.97409 * 359.97438 * 22 10 9 24 24 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47013 * 300.00571 * 1 2 3 26 26 H 1.09001 * 109.46982 * 60.00299 * 1 2 3 27 27 H 1.08999 * 109.47516 * 239.99466 * 2 1 3 28 28 H 1.09001 * 109.46982 * 119.99700 * 2 1 3 29 29 H 1.08995 * 109.47212 * 59.99610 * 5 3 2 30 30 H 1.08996 * 109.47132 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.46649 * 299.99373 * 5 3 2 32 32 H 1.07999 * 119.98669 * 0.03013 * 8 7 6 33 33 H 1.08001 * 120.01335 * 179.72031 * 9 8 7 34 34 H 0.96992 * 120.00369 * 213.23631 * 11 10 9 35 35 H 0.96998 * 120.00355 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.01464 * 180.02562 * 22 10 9 37 37 H 1.08002 * 119.98995 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 8 1.6619 2.0815 1.2209 7 6 1.5600 3.4366 1.2024 8 6 1.0923 4.1124 2.3216 9 6 0.9829 5.4877 2.3020 10 6 1.3523 6.1980 1.1644 11 7 1.2480 7.5891 1.1455 12 6 1.4537 8.2957 2.2747 13 8 1.8232 7.7304 3.2879 14 6 1.2396 9.6972 2.2827 15 1 0.9121 10.1986 1.3840 16 6 1.4529 10.4317 3.4568 17 7 1.8485 9.8252 4.5441 18 14 1.1716 12.2784 3.4674 19 1 -0.2374 12.5624 3.8411 20 1 2.0827 12.9125 4.4538 21 1 1.4456 12.8286 2.1155 22 6 1.8260 5.5201 0.0460 23 6 1.9296 4.1445 0.0663 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8532 0.9570 -1.0571 30 1 3.9281 2.4720 -0.1262 31 1 3.9994 0.9054 0.7161 32 1 0.8101 3.5611 3.2064 33 1 0.6148 6.0128 3.1710 34 1 1.0276 8.0478 0.3198 35 1 1.9958 10.3336 5.3569 36 1 2.1135 6.0705 -0.8377 37 1 2.2977 3.6180 -0.8018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133078263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:39 Heat of formation + Delta-G solvation = -83.631817 kcal Electronic energy + Delta-G solvation = -19258.206131 eV Core-core repulsion = 16192.498860 eV Total energy + Delta-G solvation = -3065.707270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31334 -40.10711 -38.13404 -35.47266 -34.73284 -34.17883 -32.00147 -30.74826 -30.03534 -28.06425 -24.92404 -24.15936 -23.39546 -22.15907 -21.11744 -19.42858 -19.19476 -17.80747 -17.59039 -16.78354 -16.16825 -15.85801 -15.68727 -15.20231 -14.91395 -14.71217 -14.56952 -14.21226 -14.01999 -13.89075 -13.54850 -13.12644 -13.08645 -12.90066 -12.73353 -12.68500 -12.57503 -12.03069 -11.97572 -11.90225 -11.64727 -11.36528 -10.99501 -10.39950 -10.02362 -9.73784 -8.38204 -8.37226 -7.00443 0.45296 0.57218 1.39789 1.40680 1.56968 2.21372 2.35863 2.37416 2.88679 3.06763 3.66754 3.77953 3.93951 3.97915 4.05732 4.16332 4.36473 4.47469 4.50630 4.64207 4.71740 4.77562 4.82037 5.01712 5.08718 5.09441 5.14208 5.22315 5.25808 5.32735 5.38046 5.45837 5.55864 5.76881 5.90148 6.20699 6.39699 6.66277 6.74455 7.44009 8.40474 8.58575 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053877 B = 0.003630 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.579641 B = 7711.631878 C = 7814.458279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.070 3.930 4 H 0.080 0.920 5 C -0.179 4.179 6 O -0.323 6.323 7 C 0.095 3.905 8 C -0.143 4.143 9 C -0.115 4.115 10 C 0.125 3.875 11 N -0.695 5.695 12 C 0.529 3.471 13 O -0.616 6.616 14 C -0.567 4.567 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.803 5.803 18 Si 1.003 2.997 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.247 1.247 22 C -0.127 4.127 23 C -0.176 4.176 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.405 0.595 35 H 0.278 0.722 36 H 0.148 0.852 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 -13.816 -12.910 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C 0.014 3.986 4 H 0.098 0.902 5 C -0.236 4.236 6 O -0.238 6.238 7 C 0.049 3.951 8 C -0.162 4.162 9 C -0.136 4.136 10 C 0.028 3.972 11 N -0.341 5.341 12 C 0.338 3.662 13 O -0.504 6.504 14 C -0.602 4.602 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.431 5.431 18 Si 0.821 3.179 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.170 1.170 22 C -0.148 4.148 23 C -0.195 4.195 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.402 -14.279 -11.839 18.553 hybrid contribution -0.129 1.179 0.137 1.193 sum -0.531 -13.100 -11.702 17.574 Atomic orbital electron populations 1.21763 0.95531 1.02297 1.01602 1.21657 0.96481 0.92913 1.04065 1.22791 0.95702 0.94625 0.85464 0.90183 1.22389 0.94606 1.02766 1.03879 1.86066 1.84512 1.15952 1.37257 1.18829 0.98863 0.82985 0.94440 1.20294 1.04808 0.92699 0.98380 1.20943 1.00894 0.93292 0.98500 1.18150 0.98769 0.84602 0.95701 1.43631 1.73388 1.03437 1.13609 1.17429 0.78300 0.88797 0.81637 1.90613 1.52954 1.72648 1.34149 1.20600 1.47913 0.92311 0.99332 0.89070 1.27057 0.91368 1.06563 0.93774 1.70175 1.31544 1.39743 1.01648 0.84945 0.79040 0.74111 0.79767 1.18515 1.19662 1.16974 1.20957 1.00998 0.94430 0.98381 1.21238 1.05733 0.93897 0.98653 0.91177 0.94156 0.92404 0.87502 0.91327 0.88474 0.92896 0.92095 0.85463 0.88083 0.75944 0.91136 0.83388 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.81 71.98 0.71 -1.84 16 2 C -0.11 -1.75 5.64 30.59 0.17 -1.58 16 3 C 0.07 1.39 2.23 30.60 0.07 1.46 16 4 H 0.08 1.45 6.33 -2.38 -0.02 1.44 16 5 C -0.18 -3.13 9.16 71.98 0.66 -2.48 16 6 O -0.32 -9.37 9.33 -92.47 -0.86 -10.23 16 7 C 0.09 3.18 6.60 22.57 0.15 3.33 16 8 C -0.14 -5.65 9.98 22.36 0.22 -5.43 16 9 C -0.12 -5.39 8.65 22.42 0.19 -5.20 16 10 C 0.12 5.48 6.28 38.33 0.24 5.72 16 11 N -0.70 -32.68 5.31 -311.32 -1.65 -34.33 16 12 C 0.53 30.91 7.31 85.11 0.62 31.53 16 13 O -0.62 -41.23 12.54 -4.59 -0.06 -41.29 16 14 C -0.57 -31.64 9.31 23.60 0.22 -31.42 16 15 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 16 C 0.03 1.66 5.50 85.33 0.47 2.13 16 17 N -0.80 -48.38 11.73 21.85 0.26 -48.13 16 18 Si 1.00 39.83 29.56 68.60 2.03 41.85 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 22 C -0.13 -4.30 9.96 22.41 0.22 -4.08 16 23 C -0.18 -5.28 8.22 22.36 0.18 -5.09 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 0.85 7.82 -2.39 -0.02 0.83 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.08 6.86 -2.39 -0.02 1.06 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.10 5.55 6.40 -2.91 -0.02 5.54 16 34 H 0.41 15.88 8.77 -92.71 -0.81 15.06 16 35 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 37 H 0.16 3.52 5.40 -2.91 -0.02 3.50 16 Total: -1.00 -75.32 311.14 4.11 -71.21 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.27 Total: 33.86 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.13 Total: -12.95 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.40 Total: -82.46 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.92 Total: -51.52 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Total: -75.32 4.11 -71.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133078263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.418 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds