Wall clock time and date at job start Mon Mar 30 2020 00:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47205 * 2 1 4 4 O 1.42894 * 109.47501 * 120.00632 * 2 1 3 5 5 C 1.42901 * 114.00238 * 89.99794 * 4 2 1 6 6 C 1.50706 * 109.47077 * 180.02562 * 5 4 2 7 7 C 1.38327 * 119.91206 * 269.72253 * 6 5 4 8 8 C 1.38063 * 120.08180 * 179.76626 * 7 6 5 9 9 C 1.39027 * 119.91318 * 0.53206 * 8 7 6 10 10 N 1.39539 * 120.08376 * 179.70074 * 9 8 7 11 11 C 1.34771 * 120.00089 * 213.41118 * 10 9 8 12 12 O 1.21742 * 120.00248 * 5.28087 * 11 10 9 13 13 C 1.46173 * 120.00071 * 185.27587 * 11 10 9 14 14 H 1.07996 * 119.99851 * 0.02562 * 13 11 10 15 15 C 1.40124 * 119.99952 * 180.02562 * 13 11 10 16 16 N 1.30638 * 120.00175 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99856 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47366 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47061 * 120.00167 * 17 15 13 20 20 H 1.48499 * 109.47497 * 240.00171 * 17 15 13 21 21 C 1.39026 * 119.83518 * 359.72243 * 9 8 7 22 22 C 1.38055 * 119.91635 * 0.02562 * 21 9 8 23 23 H 1.08999 * 109.46726 * 299.99282 * 1 2 3 24 24 H 1.08999 * 109.47089 * 59.99634 * 1 2 3 25 25 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46634 * 240.00469 * 2 1 3 27 27 H 1.08997 * 109.46675 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47073 * 300.00617 * 3 2 1 29 29 H 1.09003 * 109.46299 * 60.00385 * 3 2 1 30 30 H 1.09002 * 109.46895 * 299.99717 * 5 4 2 31 31 H 1.08993 * 109.46933 * 60.00189 * 5 4 2 32 32 H 1.08000 * 119.96201 * 0.02562 * 7 6 5 33 33 H 1.08002 * 120.04332 * 180.25410 * 8 7 6 34 34 H 0.96995 * 119.99603 * 33.41732 * 10 9 8 35 35 H 0.96996 * 119.99715 * 180.02562 * 16 15 13 36 36 H 1.08008 * 120.04252 * 179.97438 * 21 9 8 37 37 H 1.08001 * 119.96336 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.2002 -2.0783 0.9884 6 6 2.7004 -2.6836 2.2747 7 6 4.0601 -2.7661 2.5152 8 6 4.5222 -3.3155 3.6945 9 6 3.6192 -3.7964 4.6359 10 7 4.0825 -4.3581 5.8263 11 6 3.4042 -5.3701 6.4026 12 8 2.4428 -5.8583 5.8375 13 6 3.8229 -5.8816 7.7064 14 1 4.6756 -5.4482 8.2079 15 6 3.1180 -6.9341 8.3054 16 7 2.0869 -7.4586 7.6984 17 14 3.6536 -7.5882 9.9711 18 1 4.8402 -6.8298 10.4426 19 1 2.5448 -7.4275 10.9458 20 1 4.0013 -9.0268 9.8496 21 6 2.2535 -3.7165 4.3882 22 6 1.7990 -3.1610 3.2090 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.2538 -2.5434 0.7123 31 1 2.9320 -2.2467 0.1984 32 1 4.7611 -2.3964 1.7815 33 1 5.5838 -3.3759 3.8834 34 1 4.8926 -4.0202 6.2389 35 1 1.5988 -8.1869 8.1133 36 1 1.5491 -4.0894 5.1171 37 1 0.7382 -3.0982 3.0160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133221837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:29 Heat of formation + Delta-G solvation = -71.581284 kcal Electronic energy + Delta-G solvation = -18890.805036 eV Core-core repulsion = 15825.620316 eV Total energy + Delta-G solvation = -3065.184720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34218 -38.29133 -36.87102 -33.81291 -32.73028 -32.36772 -30.30403 -29.74909 -27.40255 -26.66917 -24.77820 -22.29052 -21.37475 -21.23879 -19.65385 -17.56435 -16.85883 -16.34947 -15.66105 -15.55348 -15.30866 -14.46068 -14.12084 -13.92959 -13.51936 -13.18089 -12.95325 -12.80978 -12.61532 -12.40827 -12.25513 -12.17003 -11.77038 -11.52919 -11.31099 -11.12619 -10.91798 -10.72604 -10.63739 -10.50732 -10.31206 -9.54079 -9.27720 -8.89084 -8.36014 -7.75322 -7.04799 -6.35727 -4.82820 1.88691 2.04965 3.05520 3.13988 3.18468 3.75360 3.98677 4.32952 4.59115 4.65947 4.74587 4.89256 5.04362 5.19352 5.26705 5.40673 5.42673 5.55611 5.58559 5.63889 5.67591 5.69932 5.70457 5.98976 6.03136 6.06811 6.28781 6.39540 6.61753 6.89480 7.10959 7.17236 7.27641 7.31066 7.45192 7.74261 8.06460 8.18237 8.84314 9.21502 10.37793 10.55910 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050938 B = 0.003373 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.556713 B = 8300.032288 C = 8570.087279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.376 6.376 5 C 0.115 3.885 6 C -0.145 4.145 7 C -0.077 4.077 8 C -0.182 4.182 9 C 0.201 3.799 10 N -0.700 5.700 11 C 0.542 3.458 12 O -0.559 6.559 13 C -0.538 4.538 14 H 0.072 0.928 15 C 0.086 3.914 16 N -0.759 5.759 17 Si 0.913 3.087 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.133 4.133 22 C -0.077 4.077 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.393 0.607 35 H 0.271 0.729 36 H 0.139 0.861 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 12.059 -11.908 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.296 6.296 5 C 0.039 3.961 6 C -0.146 4.146 7 C -0.096 4.096 8 C -0.203 4.203 9 C 0.102 3.898 10 N -0.343 5.343 11 C 0.349 3.651 12 O -0.441 6.441 13 C -0.574 4.574 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.387 5.387 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.154 4.154 22 C -0.096 4.096 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.159 11.584 -12.027 16.699 hybrid contribution 0.615 -0.376 0.756 1.045 sum 0.775 11.208 -11.270 15.914 Atomic orbital electron populations 1.22305 0.96247 1.02389 1.02350 1.22050 0.93560 0.93789 0.88619 1.21853 1.01742 0.94742 1.02268 1.88063 1.86356 1.20213 1.34975 1.21236 0.98820 0.81076 0.94974 1.19249 0.93606 1.04859 0.96910 1.20582 0.94411 0.98324 0.96307 1.20834 0.98667 1.06584 0.94241 1.18039 0.92672 0.91708 0.87368 1.44196 1.29966 1.37317 1.22834 1.18401 0.82790 0.77678 0.86249 1.90640 1.29117 1.59461 1.64866 1.20900 1.15807 1.18681 1.02007 0.90933 1.25755 0.93732 0.95339 0.98712 1.69996 1.13869 1.18683 1.36164 0.86223 0.79416 0.79032 0.81606 1.18632 1.19981 1.20000 1.21314 0.95080 1.00357 0.98650 1.20814 0.98670 0.96913 0.93193 0.91739 0.91983 0.92442 0.92537 0.92071 0.91579 0.91805 0.93119 0.93201 0.86851 0.86476 0.77337 0.91780 0.84364 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.53 37.16 0.35 -1.28 16 2 C 0.08 0.80 3.34 -26.73 -0.09 0.71 16 3 C -0.15 -1.31 9.56 37.16 0.36 -0.96 16 4 O -0.38 -5.25 9.97 -35.23 -0.35 -5.60 16 5 C 0.11 1.55 5.87 36.01 0.21 1.77 16 6 C -0.14 -2.41 5.51 -104.55 -0.58 -2.99 16 7 C -0.08 -1.26 9.69 -39.61 -0.38 -1.65 16 8 C -0.18 -3.26 9.97 -39.35 -0.39 -3.65 16 9 C 0.20 4.32 6.28 -83.77 -0.53 3.80 16 10 N -0.70 -15.96 5.32 -11.20 -0.06 -16.01 16 11 C 0.54 15.10 7.47 -13.08 -0.10 15.00 16 12 O -0.56 -17.48 12.70 5.15 0.07 -17.42 16 13 C -0.54 -14.70 9.54 -35.69 -0.34 -15.04 16 14 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 15 C 0.09 2.31 5.50 -17.35 -0.10 2.22 16 16 N -0.76 -22.03 11.82 55.55 0.66 -21.37 16 17 Si 0.91 19.50 29.56 -169.99 -5.02 14.47 16 18 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.13 -2.92 8.65 -39.36 -0.34 -3.26 16 22 C -0.08 -1.43 9.69 -39.62 -0.38 -1.81 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 26 H 0.06 0.52 7.79 -51.92 -0.40 0.11 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.63 7.81 -51.93 -0.41 0.23 16 31 H 0.05 0.59 8.03 -51.93 -0.42 0.17 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.39 7.65 8.79 -40.82 -0.36 7.29 16 35 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 36 H 0.14 3.44 6.42 -52.48 -0.34 3.10 16 37 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -32.78 319.02 -7.47 -40.25 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.26 Total: 8.02 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.30 Total: -7.14 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.60 Total: -37.39 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.29 Total: -23.01 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.78 -7.47 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133221837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds