Wall clock time and date at job start Sun Mar 29 2020 23:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47163 * 2 1 4 4 H 1.09001 * 109.47530 * 304.99568 * 3 2 1 5 5 N 1.46498 * 109.47295 * 65.00368 * 3 2 1 6 6 C 1.38855 * 119.99723 * 274.99937 * 5 3 2 7 7 C 1.39566 * 119.84472 * 359.72548 * 6 5 3 8 8 C 1.36344 * 120.16396 * 179.72011 * 7 6 5 9 9 C 1.40888 * 119.83081 * 0.55221 * 8 7 6 10 10 C 1.41138 * 120.15386 * 179.70371 * 9 8 7 11 11 H 1.08000 * 120.00158 * 204.62533 * 10 9 8 12 12 C 1.39868 * 119.99799 * 24.61931 * 10 9 8 13 13 N 1.30905 * 120.00192 * 17.97243 * 12 10 9 14 14 Si 1.86804 * 119.99921 * 197.96747 * 12 10 9 15 15 H 1.48506 * 109.46991 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46963 * 120.00142 * 14 12 10 17 17 H 1.48498 * 109.47382 * 240.00239 * 14 12 10 18 18 C 1.40885 * 119.69129 * 359.72106 * 9 8 7 19 19 C 1.36340 * 119.83674 * 0.02562 * 18 9 8 20 20 C 1.50708 * 109.47261 * 185.00402 * 3 2 1 21 21 O 1.20829 * 119.99713 * 240.00219 * 20 3 2 22 22 O 1.34227 * 119.99889 * 59.72081 * 20 3 2 23 23 C 1.45203 * 116.99787 * 180.27798 * 22 20 3 24 24 H 1.09008 * 109.47065 * 300.00219 * 1 2 3 25 25 H 1.08999 * 109.47559 * 59.99673 * 1 2 3 26 26 H 1.09006 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46750 * 239.99870 * 2 1 3 28 28 H 1.08999 * 109.47559 * 120.00327 * 2 1 3 29 29 H 0.97002 * 120.00070 * 95.00504 * 5 3 2 30 30 H 1.08007 * 119.91717 * 359.97438 * 7 6 5 31 31 H 1.07997 * 120.08093 * 180.27742 * 8 7 6 32 32 H 0.96998 * 119.99814 * 179.97438 * 13 12 10 33 33 H 1.08003 * 120.07934 * 179.97438 * 18 9 8 34 34 H 1.07996 * 119.91920 * 179.97438 * 19 18 9 35 35 H 1.09004 * 109.46966 * 60.00009 * 23 22 20 36 36 H 1.09000 * 109.47125 * 179.97438 * 23 22 20 37 37 H 1.08997 * 109.47289 * 300.00580 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.3984 2.6815 1.3705 7 6 -0.4883 2.6477 0.2932 8 6 -1.7235 3.2142 0.4044 9 6 -2.0995 3.8449 1.6068 10 6 -3.3741 4.4390 1.7273 11 1 -3.5335 5.2357 2.4388 12 6 -4.4308 3.9959 0.9252 13 7 -4.3577 2.8321 0.3304 14 14 -5.9464 5.0650 0.7027 15 1 -5.7822 6.3233 1.4741 16 1 -6.1184 5.3864 -0.7369 17 1 -7.1432 4.3355 1.1935 18 6 -1.1971 3.8802 2.6882 19 6 0.0328 3.3051 2.5644 20 6 3.5419 1.4443 -0.1239 21 8 4.2191 1.9416 0.7444 22 8 4.1275 0.8884 -1.1962 23 6 5.5783 0.9210 -1.2460 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2721 2.1231 1.9977 30 1 -0.1968 2.1680 -0.6296 31 1 -2.4102 3.1833 -0.4285 32 1 -5.0907 2.5247 -0.2256 33 1 -1.4787 4.3624 3.6127 34 1 0.7257 3.3317 3.3923 35 1 5.9834 0.3916 -0.3836 36 1 5.9214 0.4394 -2.1616 37 1 5.9192 1.9562 -1.2297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134948812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:46 Heat of formation + Delta-G solvation = -58.605509 kcal Electronic energy + Delta-G solvation = -19686.172180 eV Core-core repulsion = 16621.550132 eV Total energy + Delta-G solvation = -3064.622048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62200 -38.35654 -36.63119 -35.66692 -33.44174 -31.68154 -29.69714 -29.02338 -28.15164 -26.31718 -23.99225 -22.26819 -21.56270 -20.73358 -19.42553 -17.79202 -17.25351 -16.95305 -16.42489 -15.72160 -15.13249 -14.90509 -14.28377 -13.86447 -13.67205 -13.31610 -12.85948 -12.59674 -12.45098 -12.20124 -12.07613 -11.82763 -11.68422 -11.25396 -11.09820 -10.94846 -10.93791 -10.83902 -10.56770 -10.36842 -10.25260 -9.70144 -9.30554 -9.23064 -8.58477 -7.46621 -6.67033 -6.42475 -4.05398 2.16911 2.56849 2.89137 3.09214 3.15161 3.20488 3.32860 4.04568 4.22698 4.70214 4.73547 4.95229 5.01698 5.14843 5.19715 5.34986 5.62741 5.78233 5.81125 6.02970 6.18510 6.24107 6.29186 6.30697 6.50154 6.85470 6.90803 6.93157 7.17857 7.33869 7.49415 7.67273 7.69357 7.82029 8.13330 8.25204 8.44001 8.65305 8.76775 9.04574 9.12656 10.34912 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037445 B = 0.004390 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.585068 B = 6377.114925 C = 6703.977907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.129 4.129 3 C 0.175 3.825 4 H 0.110 0.890 5 N -0.743 5.743 6 C 0.087 3.913 7 C -0.162 4.162 8 C -0.128 4.128 9 C 0.078 3.922 10 C -0.466 4.466 11 H 0.073 0.927 12 C 0.075 3.925 13 N -0.805 5.805 14 Si 0.901 3.099 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.277 1.277 18 C -0.190 4.190 19 C -0.151 4.151 20 C 0.458 3.542 21 O -0.505 6.505 22 O -0.357 6.357 23 C 0.035 3.965 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.394 0.606 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.276 0.724 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -5.390 -4.638 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.066 3.934 4 H 0.128 0.872 5 N -0.381 5.381 6 C -0.009 4.009 7 C -0.184 4.184 8 C -0.148 4.148 9 C 0.075 3.925 10 C -0.497 4.497 11 H 0.091 0.909 12 C -0.140 4.140 13 N -0.432 5.432 14 Si 0.727 3.273 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.210 4.210 19 C -0.173 4.173 20 C 0.301 3.699 21 O -0.392 6.392 22 O -0.273 6.273 23 C -0.059 4.059 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.229 0.771 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.263 -5.438 -4.700 13.361 hybrid contribution -0.221 0.417 0.198 0.512 sum 11.042 -5.021 -4.502 12.938 Atomic orbital electron populations 1.22145 0.93424 1.01293 1.04312 1.22011 0.98411 0.94299 1.02104 1.20181 0.84902 0.96158 0.92173 0.87235 1.43667 1.16045 1.65608 1.12820 1.17227 0.85425 1.02392 0.95818 1.20356 0.95484 1.05910 0.96605 1.20919 0.94347 1.01219 0.98316 1.17517 0.92671 0.91856 0.90415 1.19419 0.93788 1.17553 1.18907 0.90902 1.25789 0.99852 0.94245 0.94102 1.69857 1.32272 1.16117 1.24947 0.86379 0.80977 0.81171 0.78817 1.18642 1.19955 1.20276 1.20531 0.95229 1.07137 0.98087 1.19799 0.97606 1.04428 0.95429 1.24320 0.92626 0.73929 0.79064 1.90633 1.65657 1.42333 1.40550 1.86523 1.23733 1.72821 1.44250 1.23249 0.76731 1.02759 1.03177 0.89816 0.92035 0.93497 0.91106 0.91846 0.77105 0.88463 0.86319 0.91357 0.89014 0.89488 0.92024 0.88135 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.22 37.16 0.31 -2.13 16 2 C -0.13 -1.78 5.57 -26.74 -0.15 -1.92 16 3 C 0.17 2.67 2.73 -69.08 -0.19 2.48 16 4 H 0.11 1.68 6.44 -51.93 -0.33 1.35 16 5 N -0.74 -13.29 5.03 -53.16 -0.27 -13.56 16 6 C 0.09 1.84 5.49 -83.69 -0.46 1.38 16 7 C -0.16 -3.55 6.62 -39.77 -0.26 -3.81 16 8 C -0.13 -3.22 8.64 -39.26 -0.34 -3.56 16 9 C 0.08 2.07 5.57 -106.79 -0.60 1.47 16 10 C -0.47 -12.45 9.03 -37.87 -0.34 -12.79 16 11 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 12 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 13 N -0.80 -20.79 10.96 55.54 0.61 -20.18 16 14 Si 0.90 18.96 29.60 -169.99 -5.03 13.93 16 15 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 C -0.19 -4.64 9.74 -39.26 -0.38 -5.02 16 19 C -0.15 -3.36 9.82 -39.77 -0.39 -3.75 16 20 C 0.46 6.77 7.32 36.01 0.26 7.03 16 21 O -0.50 -8.58 15.59 -18.75 -0.29 -8.87 16 22 O -0.36 -4.45 10.36 -39.25 -0.41 -4.85 16 23 C 0.03 0.32 10.56 101.05 1.07 1.38 16 24 H 0.08 1.60 5.40 -51.92 -0.28 1.32 16 25 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.39 6.95 7.79 -40.82 -0.32 6.63 16 30 H 0.10 1.90 3.99 -52.48 -0.21 1.69 16 31 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 32 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 33 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -28.33 304.43 -7.08 -35.41 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.72 Total: 10.95 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.56 Total: -17.41 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.34 Total: -33.73 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.70 Total: -13.72 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.33 -7.08 -35.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134948812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.199 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds