Wall clock time and date at job start Mon Mar 30 2020 00:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.54904 * 2 1 4 4 O 1.44378 * 110.61725 * 122.88152 * 2 1 3 5 5 C 1.43741 * 106.97297 * 158.56359 * 4 2 1 6 6 C 1.54098 * 107.29626 * 333.48224 * 5 4 2 7 7 C 1.54811 * 104.18678 * 2.03441 * 6 5 4 8 8 H 1.08998 * 110.91054 * 139.07866 * 7 6 5 9 9 N 1.46502 * 110.90636 * 262.68049 * 7 6 5 10 10 C 1.39783 * 120.00017 * 267.70257 * 9 7 6 11 11 C 1.38945 * 120.00393 * 359.72883 * 10 9 7 12 12 C 1.38014 * 119.99181 * 179.72008 * 11 10 9 13 13 C 1.38904 * 120.00440 * 0.55007 * 12 11 10 14 14 O 1.35795 * 119.99292 * 179.70063 * 13 12 11 15 15 C 1.34814 * 116.99691 * 174.48041 * 14 13 12 16 16 H 1.07993 * 120.00400 * 5.05548 * 15 14 13 17 17 C 1.38621 * 119.99525 * 185.05689 * 15 14 13 18 18 N 1.31580 * 120.00666 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99594 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47280 * 60.00458 * 19 17 15 21 21 H 1.48508 * 109.46947 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47289 * 299.99785 * 19 17 15 23 23 C 1.38899 * 120.01063 * 359.72514 * 13 12 11 24 24 C 1.38007 * 120.00726 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.46610 * 298.57217 * 1 2 3 26 26 H 1.08994 * 109.47006 * 178.57193 * 1 2 3 27 27 H 1.09002 * 109.46769 * 58.57314 * 1 2 3 28 28 H 1.09000 * 109.88679 * 92.91062 * 5 4 2 29 29 H 1.09000 * 109.87838 * 214.06014 * 5 4 2 30 30 H 1.09007 * 110.48712 * 120.70729 * 6 5 4 31 31 H 1.08992 * 110.49256 * 243.35438 * 6 5 4 32 32 H 0.97003 * 119.99785 * 87.70469 * 9 7 6 33 33 H 1.07998 * 120.00616 * 359.97438 * 11 10 9 34 34 H 1.07999 * 120.00161 * 180.25144 * 12 11 10 35 35 H 0.96995 * 120.00515 * 180.02562 * 18 17 15 36 36 H 1.07997 * 119.99627 * 179.97438 * 23 13 12 37 37 H 1.08005 * 120.00481 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 8 2.0385 -0.7336 1.1348 5 6 3.3839 -1.1242 0.8134 6 6 3.4795 -1.2178 -0.7217 7 6 2.0759 -0.7911 -1.2160 8 1 2.1509 -0.1507 -2.0948 9 7 1.2414 -1.9625 -1.4948 10 6 1.2052 -2.5043 -2.7829 11 6 1.9563 -1.9284 -3.8002 12 6 1.9249 -2.4670 -5.0705 13 6 1.1337 -3.5777 -5.3347 14 8 1.0983 -4.1037 -6.5862 15 6 0.4024 -5.2467 -6.7501 16 1 -0.1619 -5.6582 -5.9264 17 6 0.4114 -5.8937 -7.9760 18 7 1.0994 -5.3927 -8.9795 19 14 -0.5534 -7.4771 -8.2034 20 1 -1.9929 -7.2213 -7.9433 21 1 -0.3806 -7.9665 -9.5948 22 1 -0.0530 -8.5025 -7.2528 23 6 0.3784 -4.1500 -4.3192 24 6 0.4142 -3.6156 -3.0473 25 1 -0.3632 0.4915 0.9025 26 1 -0.3633 -1.0273 -0.0256 27 1 -0.3633 0.5359 -0.8769 28 1 4.0855 -0.3765 1.1835 29 1 3.6045 -2.0945 1.2583 30 1 4.2407 -0.5347 -1.0989 31 1 3.6975 -2.2406 -1.0288 32 1 0.7140 -2.3622 -0.7856 33 1 2.5678 -1.0620 -3.5959 34 1 2.5118 -2.0220 -5.8604 35 1 1.1053 -5.8453 -9.8374 36 1 -0.2370 -5.0133 -4.5250 37 1 -0.1734 -4.0604 -2.2579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147384692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:04 Heat of formation + Delta-G solvation = -60.020160 kcal Electronic energy + Delta-G solvation = -19378.240273 eV Core-core repulsion = 16313.556881 eV Total energy + Delta-G solvation = -3064.683392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07936 -40.35264 -38.42943 -35.54751 -34.10311 -32.46514 -32.12915 -31.53315 -28.62139 -27.26032 -26.40106 -23.79037 -22.81466 -22.57180 -21.34060 -19.61716 -18.96314 -18.23124 -17.32028 -16.60853 -16.34370 -16.17290 -15.94865 -15.59881 -15.32796 -15.14242 -14.59812 -14.23592 -14.06495 -13.63394 -13.44895 -13.34381 -13.27571 -12.96031 -12.79443 -12.52918 -12.38660 -12.15255 -12.13166 -11.87081 -11.70952 -11.08625 -10.95142 -10.62413 -10.15461 -9.77041 -8.38863 -7.93645 -6.02615 0.59349 0.93527 1.36911 1.47987 1.52874 2.23120 2.56047 2.90299 2.94306 3.25240 3.66778 3.70793 3.74134 4.05126 4.14261 4.18898 4.20623 4.31803 4.46265 4.55210 4.62475 4.71640 4.74828 4.89281 4.92378 4.99997 5.04616 5.12191 5.17724 5.28584 5.30831 5.48900 5.55832 5.79403 5.94194 6.01518 6.11856 6.62418 6.98551 7.07045 7.93783 8.85423 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.003730 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.706015 B = 7504.633455 C = 7692.136206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.098 0.902 4 O -0.395 6.395 5 C 0.049 3.951 6 C -0.173 4.173 7 C 0.122 3.878 8 H 0.102 0.898 9 N -0.731 5.731 10 C 0.156 3.844 11 C -0.142 4.142 12 C -0.154 4.154 13 C 0.061 3.939 14 O -0.242 6.242 15 C -0.408 4.408 16 H 0.098 0.902 17 C -0.027 4.027 18 N -0.927 5.927 19 Si 1.015 2.985 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.193 4.193 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.270 0.730 36 H 0.117 0.883 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 9.753 19.218 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.116 0.884 4 O -0.315 6.315 5 C -0.028 4.028 6 C -0.212 4.212 7 C 0.015 3.985 8 H 0.120 0.880 9 N -0.365 5.365 10 C 0.055 3.945 11 C -0.164 4.164 12 C -0.174 4.174 13 C 0.012 3.988 14 O -0.150 6.150 15 C -0.484 4.484 16 H 0.115 0.885 17 C -0.223 4.223 18 N -0.566 5.566 19 Si 0.835 3.165 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.213 4.213 24 C -0.169 4.169 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.237 0.763 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.638 9.894 18.998 21.483 hybrid contribution -0.310 -1.006 -0.507 1.169 sum 1.328 8.888 18.491 20.559 Atomic orbital electron populations 1.21711 0.92558 1.02827 1.02935 1.23518 0.96024 0.95748 0.83724 0.88447 1.88874 1.28925 1.74063 1.39657 1.23188 0.84001 1.00831 0.94760 1.23508 0.98339 1.03400 0.96001 1.22410 0.89606 0.87673 0.98767 0.88022 1.44256 1.52264 1.33081 1.06917 1.17482 0.97007 0.93901 0.86075 1.20453 1.03278 1.02021 0.90694 1.20248 1.01928 0.97179 0.98035 1.19762 0.97534 0.95829 0.85710 1.83933 1.67584 1.38841 1.24662 1.21711 1.27619 0.99810 0.99282 0.88515 1.26506 0.98825 1.03032 0.93979 1.70191 1.42040 1.41466 1.02928 0.84695 0.78181 0.75514 0.78104 1.18254 1.19757 1.18359 1.21033 1.03573 1.03039 0.93647 1.20468 1.02677 0.97719 0.95996 0.91337 0.92419 0.90403 0.90829 0.90105 0.88379 0.91246 0.76293 0.83699 0.86840 0.92136 0.86491 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.34 71.98 0.67 -1.57 16 2 C 0.07 1.09 3.83 31.28 0.12 1.21 16 3 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 4 O -0.40 -7.74 11.22 -148.98 -1.67 -9.41 16 5 C 0.05 0.77 7.70 72.35 0.56 1.33 16 6 C -0.17 -2.88 6.76 31.58 0.21 -2.67 16 7 C 0.12 2.23 2.96 46.29 0.14 2.37 16 8 H 0.10 1.77 6.35 -2.39 -0.02 1.75 16 9 N -0.73 -16.79 4.63 -312.67 -1.45 -18.24 16 10 C 0.16 4.83 6.66 38.21 0.25 5.08 16 11 C -0.14 -4.72 9.22 22.39 0.21 -4.51 16 12 C -0.15 -6.59 9.98 22.38 0.22 -6.36 16 13 C 0.06 3.10 6.65 22.59 0.15 3.25 16 14 O -0.24 -14.94 9.76 -23.07 -0.23 -15.16 16 15 C -0.41 -24.36 9.48 67.91 0.64 -23.72 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 17 C -0.03 -1.58 5.49 84.82 0.47 -1.12 16 18 N -0.93 -58.27 13.67 21.61 0.30 -57.98 16 19 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 23 C -0.19 -8.57 9.16 22.37 0.20 -8.36 16 24 C -0.15 -5.12 9.89 22.39 0.22 -4.89 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.00 6.39 -2.39 -0.02 0.98 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 32 H 0.40 8.65 7.21 -92.71 -0.67 7.98 16 33 H 0.15 3.77 6.17 -2.91 -0.02 3.75 16 34 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.12 5.30 5.63 -2.91 -0.02 5.28 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -71.91 305.57 3.47 -68.45 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.42 Total: 26.32 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.07 Total: -39.96 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.15 Total: -76.22 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.90 Total: -24.58 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.91 3.47 -68.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147384692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.426 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds