Wall clock time and date at job start Mon Mar 30 2020 00:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.89153 * 2 1 4 4 O 1.43241 * 109.83241 * 239.06999 * 2 1 3 5 5 C 1.43645 * 109.97178 * 242.19770 * 4 2 1 6 6 C 1.54948 * 105.13180 * 335.56657 * 5 4 2 7 7 C 1.54381 * 109.83464 * 120.93443 * 2 1 3 8 8 H 1.08998 * 111.02170 * 22.60144 * 7 2 1 9 9 N 1.46499 * 110.84421 * 259.06398 * 7 2 1 10 10 C 1.39792 * 119.99721 * 160.71385 * 9 7 2 11 11 C 1.38945 * 120.00284 * 179.97438 * 10 9 7 12 12 C 1.38011 * 119.99012 * 179.97438 * 11 10 9 13 13 C 1.38896 * 120.00952 * 359.97438 * 12 11 10 14 14 O 1.35798 * 119.99846 * 179.97438 * 13 12 11 15 15 C 1.34811 * 116.99793 * 5.54531 * 14 13 12 16 16 H 1.07999 * 120.00093 * 354.94158 * 15 14 13 17 17 C 1.38613 * 120.00098 * 175.21542 * 15 14 13 18 18 N 1.31589 * 119.99924 * 359.72277 * 17 15 14 19 19 Si 1.86802 * 120.00184 * 179.72707 * 17 15 14 20 20 H 1.48493 * 109.47046 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47110 * 119.99837 * 19 17 15 22 22 H 1.48499 * 109.47059 * 239.99612 * 19 17 15 23 23 C 1.38900 * 120.00780 * 0.26251 * 13 12 11 24 24 C 1.38014 * 120.00807 * 359.48360 * 23 13 12 25 25 H 1.09002 * 109.47190 * 299.06092 * 1 2 3 26 26 H 1.08995 * 109.47474 * 59.06956 * 1 2 3 27 27 H 1.09003 * 109.46757 * 179.06831 * 1 2 3 28 28 H 1.09000 * 110.30807 * 216.65803 * 5 4 2 29 29 H 1.08996 * 110.39160 * 94.52784 * 5 4 2 30 30 H 1.09001 * 111.12746 * 278.52601 * 6 5 4 31 31 H 1.09002 * 111.15985 * 154.38240 * 6 5 4 32 32 H 0.96994 * 120.00458 * 340.70742 * 9 7 2 33 33 H 1.07997 * 120.00547 * 359.95820 * 11 10 9 34 34 H 1.07999 * 119.99613 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99618 * 179.97438 * 18 17 15 36 36 H 1.08010 * 119.99716 * 179.71599 * 23 13 12 37 37 H 1.07994 * 120.00276 * 180.25410 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0160 -0.6926 -1.1558 5 6 2.7748 -1.8444 -0.7547 6 6 3.2731 -1.5220 0.6766 7 6 2.0538 -0.7465 1.2457 8 1 1.3029 -1.4348 1.6335 9 7 2.4750 0.1997 2.2817 10 6 2.5965 -0.2245 3.6081 11 6 2.9965 0.6727 4.5907 12 6 3.1157 0.2537 5.9003 13 6 2.8355 -1.0646 6.2361 14 8 2.9534 -1.4768 7.5246 15 6 3.2342 -0.5334 8.4457 16 1 3.4354 0.4813 8.1354 17 6 3.2703 -0.8668 9.7906 18 7 3.0251 -2.1031 10.1688 19 14 3.6669 0.4389 11.0664 20 1 3.9021 1.7386 10.3878 21 1 2.5276 0.5714 12.0097 22 1 4.8867 0.0443 11.8158 23 6 2.4404 -1.9629 5.2531 24 6 2.3158 -1.5432 3.9442 25 1 -0.3634 0.4992 0.8983 26 1 -0.3634 0.5282 -0.8815 27 1 -0.3633 -1.0276 -0.0167 28 1 3.6211 -1.9923 -1.4255 29 1 2.1416 -2.7315 -0.7440 30 1 4.1621 -0.8918 0.6505 31 1 3.4579 -2.4343 1.2438 32 1 2.6698 1.1206 2.0473 33 1 3.2142 1.6978 4.3297 34 1 3.4262 0.9511 6.6642 35 1 3.0508 -2.3365 11.1100 36 1 2.2269 -2.9892 5.5137 37 1 2.0047 -2.2407 3.1807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147384870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:07 Heat of formation + Delta-G solvation = -43.083845 kcal Electronic energy + Delta-G solvation = -19254.227186 eV Core-core repulsion = 16190.278207 eV Total energy + Delta-G solvation = -3063.948978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02629 -38.86459 -36.91440 -34.38907 -32.16176 -31.66180 -30.92336 -30.07918 -27.40880 -25.66911 -24.77373 -22.46215 -21.97967 -20.99418 -20.52532 -17.87025 -17.50803 -16.71045 -16.47111 -15.73558 -15.02919 -14.54775 -14.37203 -14.10239 -13.82569 -13.64545 -13.49144 -12.91570 -12.76035 -12.59424 -12.47387 -12.15204 -11.95359 -11.58946 -11.50690 -11.29464 -11.14202 -10.95384 -10.87607 -10.55249 -10.36479 -9.76255 -9.25861 -9.22286 -8.48333 -8.21005 -6.46000 -6.34671 -3.91985 2.16597 2.52043 3.16748 3.18195 3.23436 3.45632 3.80235 4.04210 4.41715 4.56175 4.67127 4.82703 4.95666 5.02795 5.13637 5.18331 5.36863 5.42164 5.49120 5.57146 5.61562 5.73136 5.73906 5.82425 5.93367 5.97687 6.19209 6.21906 6.49394 6.78904 6.82496 6.87291 7.09300 7.29859 7.40980 7.59810 7.90732 8.09743 8.15900 9.11434 9.85227 10.84122 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048755 B = 0.003593 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.165852 B = 7790.372902 C = 7991.983319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.072 3.928 3 H 0.081 0.919 4 O -0.379 6.379 5 C 0.050 3.950 6 C -0.176 4.176 7 C 0.135 3.865 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.122 3.878 11 C -0.139 4.139 12 C -0.190 4.190 13 C 0.115 3.885 14 O -0.188 6.188 15 C -0.387 4.387 16 H 0.089 0.911 17 C 0.036 3.964 18 N -0.868 5.868 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.151 4.151 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.392 0.608 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 3.481 -17.726 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.099 0.901 4 O -0.298 6.298 5 C -0.026 4.026 6 C -0.215 4.215 7 C 0.027 3.973 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.024 3.976 11 C -0.161 4.161 12 C -0.210 4.210 13 C 0.062 3.938 14 O -0.093 6.093 15 C -0.464 4.464 16 H 0.106 0.894 17 C -0.167 4.167 18 N -0.505 5.505 19 Si 0.763 3.237 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.171 4.171 24 C -0.166 4.166 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.226 0.774 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.894 3.033 -17.664 18.022 hybrid contribution 0.382 0.958 0.780 1.293 sum -1.512 3.991 -16.884 17.416 Atomic orbital electron populations 1.22117 0.94375 1.02774 1.02521 1.22861 0.94624 0.96380 0.84774 0.90119 1.88441 1.71025 1.40621 1.29727 1.23334 0.95035 0.88818 0.95457 1.23808 0.99794 1.02128 0.95771 1.22242 0.95350 0.91682 0.88006 0.89093 1.44068 1.79057 1.11279 1.03876 1.17353 1.03099 0.93492 0.83629 1.20228 1.05656 0.97903 0.92305 1.20995 1.07319 0.96710 0.96002 1.19250 0.95807 0.92130 0.86573 1.83987 1.78481 1.35609 1.11184 1.21287 1.48515 0.90886 0.85705 0.89368 1.25223 0.97164 0.97390 0.96913 1.70063 1.46373 1.17277 1.16754 0.85692 0.78256 0.79641 0.80079 1.19249 1.20282 1.20301 1.20027 1.06548 0.99262 0.91247 1.20178 1.06701 0.94070 0.95652 0.91096 0.91941 0.92073 0.89759 0.92097 0.90010 0.89577 0.77393 0.87575 0.85451 0.92324 0.86501 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.44 37.16 0.35 -1.14 16 2 C 0.07 0.74 3.91 -26.01 -0.10 0.64 16 3 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 4 O -0.38 -4.31 11.02 -35.23 -0.39 -4.70 16 5 C 0.05 0.47 7.78 38.19 0.30 0.77 16 6 C -0.18 -1.82 6.85 -24.48 -0.17 -1.99 16 7 C 0.13 1.51 2.44 -65.99 -0.16 1.34 16 8 H 0.09 1.06 6.39 -51.93 -0.33 0.73 16 9 N -0.75 -9.57 5.40 -50.24 -0.27 -9.84 16 10 C 0.12 2.02 6.66 -83.70 -0.56 1.46 16 11 C -0.14 -2.50 9.89 -39.40 -0.39 -2.89 16 12 C -0.19 -4.12 9.16 -39.42 -0.36 -4.48 16 13 C 0.12 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.42 9.76 -0.04 0.00 -5.42 16 15 C -0.39 -10.95 9.48 30.87 0.29 -10.66 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 18 N -0.87 -25.86 13.67 55.48 0.76 -25.11 16 19 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.15 -3.17 9.98 -39.42 -0.39 -3.56 16 24 C -0.14 -2.53 9.22 -39.40 -0.36 -2.89 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.39 4.41 8.32 -40.82 -0.34 4.07 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 37 H 0.11 1.64 6.30 -52.49 -0.33 1.31 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -31.15 308.59 -7.09 -38.24 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.91 Total: 6.35 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.91 Total: -19.98 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.49 Total: -34.95 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.39 Total: -10.12 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.15 -7.09 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147384870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.843 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds