Wall clock time and date at job start Mon Mar 30 2020 00:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.89153 * 2 1 4 4 O 1.43241 * 109.83241 * 239.06999 * 2 1 3 5 5 C 1.43645 * 109.97178 * 242.19770 * 4 2 1 6 6 C 1.54948 * 105.13180 * 335.56657 * 5 4 2 7 7 C 1.54381 * 109.83464 * 120.93443 * 2 1 3 8 8 H 1.08998 * 111.02170 * 22.60144 * 7 2 1 9 9 N 1.46499 * 110.84421 * 259.06398 * 7 2 1 10 10 C 1.39792 * 119.99721 * 160.71385 * 9 7 2 11 11 C 1.38945 * 120.00284 * 179.97438 * 10 9 7 12 12 C 1.38011 * 119.99012 * 179.97438 * 11 10 9 13 13 C 1.38896 * 120.00952 * 359.97438 * 12 11 10 14 14 O 1.35798 * 119.99846 * 179.97438 * 13 12 11 15 15 C 1.34811 * 116.99793 * 5.54531 * 14 13 12 16 16 H 1.07999 * 120.00093 * 354.94158 * 15 14 13 17 17 C 1.38613 * 120.00098 * 175.21542 * 15 14 13 18 18 N 1.31589 * 119.99924 * 359.72277 * 17 15 14 19 19 Si 1.86802 * 120.00184 * 179.72707 * 17 15 14 20 20 H 1.48493 * 109.47046 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47110 * 119.99837 * 19 17 15 22 22 H 1.48499 * 109.47059 * 239.99612 * 19 17 15 23 23 C 1.38900 * 120.00780 * 0.26251 * 13 12 11 24 24 C 1.38014 * 120.00807 * 359.48360 * 23 13 12 25 25 H 1.09002 * 109.47190 * 299.06092 * 1 2 3 26 26 H 1.08995 * 109.47474 * 59.06956 * 1 2 3 27 27 H 1.09003 * 109.46757 * 179.06831 * 1 2 3 28 28 H 1.09000 * 110.30807 * 216.65803 * 5 4 2 29 29 H 1.08996 * 110.39160 * 94.52784 * 5 4 2 30 30 H 1.09001 * 111.12746 * 278.52601 * 6 5 4 31 31 H 1.09002 * 111.15985 * 154.38240 * 6 5 4 32 32 H 0.96994 * 120.00458 * 340.70742 * 9 7 2 33 33 H 1.07997 * 120.00547 * 359.95820 * 11 10 9 34 34 H 1.07999 * 119.99613 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99618 * 179.97438 * 18 17 15 36 36 H 1.08010 * 119.99716 * 179.71599 * 23 13 12 37 37 H 1.07994 * 120.00276 * 180.25410 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0160 -0.6926 -1.1558 5 6 2.7748 -1.8444 -0.7547 6 6 3.2731 -1.5220 0.6766 7 6 2.0538 -0.7465 1.2457 8 1 1.3029 -1.4348 1.6335 9 7 2.4750 0.1997 2.2817 10 6 2.5965 -0.2245 3.6081 11 6 2.9965 0.6727 4.5907 12 6 3.1157 0.2537 5.9003 13 6 2.8355 -1.0646 6.2361 14 8 2.9534 -1.4768 7.5246 15 6 3.2342 -0.5334 8.4457 16 1 3.4354 0.4813 8.1354 17 6 3.2703 -0.8668 9.7906 18 7 3.0251 -2.1031 10.1688 19 14 3.6669 0.4389 11.0664 20 1 3.9021 1.7386 10.3878 21 1 2.5276 0.5714 12.0097 22 1 4.8867 0.0443 11.8158 23 6 2.4404 -1.9629 5.2531 24 6 2.3158 -1.5432 3.9442 25 1 -0.3634 0.4992 0.8983 26 1 -0.3634 0.5282 -0.8815 27 1 -0.3633 -1.0276 -0.0167 28 1 3.6211 -1.9923 -1.4255 29 1 2.1416 -2.7315 -0.7440 30 1 4.1621 -0.8918 0.6505 31 1 3.4579 -2.4343 1.2438 32 1 2.6698 1.1206 2.0473 33 1 3.2142 1.6978 4.3297 34 1 3.4262 0.9511 6.6642 35 1 3.0508 -2.3365 11.1100 36 1 2.2269 -2.9892 5.5137 37 1 2.0047 -2.2407 3.1807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147384870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:06 Heat of formation + Delta-G solvation = -63.887962 kcal Electronic energy + Delta-G solvation = -19255.129320 eV Core-core repulsion = 16190.278207 eV Total energy + Delta-G solvation = -3064.851113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06416 -40.38879 -38.51018 -35.69812 -34.11533 -32.45413 -32.16926 -31.51951 -28.82574 -27.28667 -26.06841 -23.90972 -22.97922 -22.22946 -21.76417 -19.67467 -18.96192 -18.13334 -17.54454 -16.84476 -16.39712 -16.07101 -15.59770 -15.43082 -15.23120 -15.04255 -14.77631 -14.36370 -14.08670 -13.97191 -13.50473 -13.41368 -13.24035 -12.93848 -12.86584 -12.66568 -12.42682 -12.14491 -12.07029 -12.03121 -11.74864 -11.09278 -10.91485 -10.53615 -10.19220 -9.77967 -8.39474 -7.97226 -6.03256 0.58299 0.91585 1.37295 1.45872 1.55286 2.22530 2.43520 2.89369 2.92174 3.24523 3.60006 3.67089 3.74647 3.96724 4.12174 4.18126 4.19566 4.25715 4.37904 4.56514 4.62550 4.70207 4.72655 4.85889 4.90313 4.98163 5.05280 5.11187 5.15691 5.26057 5.28757 5.47937 5.54188 5.78333 5.95896 6.03030 6.11506 6.56269 6.97017 7.06618 7.93146 8.85196 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048755 B = 0.003593 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.165852 B = 7790.372902 C = 7991.983319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.075 3.925 3 H 0.088 0.912 4 O -0.394 6.394 5 C 0.050 3.950 6 C -0.173 4.173 7 C 0.129 3.871 8 H 0.091 0.909 9 N -0.732 5.732 10 C 0.153 3.847 11 C -0.142 4.142 12 C -0.194 4.194 13 C 0.063 3.937 14 O -0.242 6.242 15 C -0.406 4.406 16 H 0.099 0.901 17 C -0.028 4.028 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.252 1.252 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.156 4.156 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.405 0.595 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.269 0.731 36 H 0.113 0.887 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 5.208 -20.266 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.106 0.894 4 O -0.314 6.314 5 C -0.026 4.026 6 C -0.212 4.212 7 C 0.022 3.978 8 H 0.109 0.891 9 N -0.367 5.367 10 C 0.053 3.947 11 C -0.164 4.164 12 C -0.214 4.214 13 C 0.014 3.986 14 O -0.150 6.150 15 C -0.482 4.482 16 H 0.116 0.884 17 C -0.225 4.225 18 N -0.566 5.566 19 Si 0.836 3.164 20 H -0.175 1.175 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.176 4.176 24 C -0.164 4.164 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.241 0.759 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.926 4.791 -20.311 20.957 hybrid contribution 0.340 0.433 1.133 1.260 sum -1.586 5.224 -19.178 19.940 Atomic orbital electron populations 1.22109 0.93700 1.02957 1.02887 1.22859 0.95109 0.96461 0.83842 0.89385 1.88435 1.71366 1.41316 1.30245 1.23443 0.95558 0.88620 0.94958 1.23762 0.99102 1.01905 0.96469 1.22408 0.95878 0.91601 0.87883 0.89074 1.44110 1.77651 1.12388 1.02573 1.17446 0.99440 0.92738 0.85050 1.20489 1.05169 0.99787 0.90943 1.21052 1.07202 0.95552 0.97557 1.19761 0.98896 0.94177 0.85785 1.83935 1.81262 1.36787 1.13062 1.21795 1.48466 0.91510 0.86449 0.88381 1.26521 0.96922 0.99979 0.99030 1.70214 1.49164 1.19923 1.17341 0.84553 0.78204 0.76888 0.76706 1.17495 1.19534 1.19543 1.20234 1.06238 0.98885 0.92198 1.20433 1.05988 0.95221 0.94755 0.90961 0.91370 0.92035 0.88419 0.91015 0.90365 0.89482 0.75903 0.84205 0.86376 0.92158 0.86914 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.44 71.98 0.68 -1.78 16 2 C 0.08 1.28 3.91 31.06 0.12 1.40 16 3 H 0.09 1.38 7.68 -2.39 -0.02 1.36 16 4 O -0.39 -7.67 11.02 -148.98 -1.64 -9.31 16 5 C 0.05 0.78 7.78 72.65 0.57 1.35 16 6 C -0.17 -3.01 6.85 32.05 0.22 -2.79 16 7 C 0.13 2.40 2.44 46.25 0.11 2.52 16 8 H 0.09 1.77 6.39 -2.39 -0.02 1.76 16 9 N -0.73 -15.84 5.40 -312.88 -1.69 -17.52 16 10 C 0.15 4.63 6.66 38.21 0.25 4.89 16 11 C -0.14 -4.78 9.89 22.39 0.22 -4.56 16 12 C -0.19 -8.43 9.16 22.37 0.20 -8.23 16 13 C 0.06 3.18 6.65 22.59 0.15 3.33 16 14 O -0.24 -14.85 9.76 -23.07 -0.23 -15.08 16 15 C -0.41 -24.03 9.48 67.91 0.64 -23.38 16 16 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 17 C -0.03 -1.64 5.49 84.82 0.47 -1.18 16 18 N -0.93 -58.02 13.67 21.61 0.30 -57.72 16 19 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 C -0.16 -6.63 9.98 22.38 0.22 -6.40 16 24 C -0.14 -4.69 9.22 22.39 0.21 -4.48 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.40 7.26 8.32 -92.71 -0.77 6.49 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.12 5.25 5.63 -2.91 -0.02 5.23 16 35 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 37 H 0.14 3.75 6.30 -2.91 -0.02 3.74 16 Total: -1.00 -71.41 308.59 3.15 -68.26 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.31 Total: 24.97 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 4.07 Total: -39.31 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.39 Total: -75.25 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.87 Total: -24.39 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.41 3.15 -68.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147384870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.371 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds