Wall clock time and date at job start Mon Mar 30 2020 00:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.87026 * 2 1 4 4 O 1.43746 * 109.88032 * 121.15889 * 2 1 3 5 5 C 1.44377 * 106.97673 * 145.93706 * 4 2 1 6 6 C 1.55347 * 103.50355 * 319.91307 * 5 4 2 7 7 C 1.54096 * 109.88268 * 238.99270 * 2 1 3 8 8 H 1.09004 * 110.48778 * 357.35474 * 7 2 1 9 9 N 1.46495 * 110.49207 * 119.86831 * 7 2 1 10 10 C 1.39779 * 120.00544 * 203.16086 * 9 7 2 11 11 C 1.38954 * 120.00900 * 179.97438 * 10 9 7 12 12 C 1.38009 * 119.99292 * 179.97438 * 11 10 9 13 13 C 1.38906 * 120.00607 * 0.02562 * 12 11 10 14 14 O 1.35796 * 119.99078 * 179.97438 * 13 12 11 15 15 C 1.34813 * 116.99754 * 174.48042 * 14 13 12 16 16 H 1.08000 * 120.00228 * 5.05103 * 15 14 13 17 17 C 1.38620 * 120.00007 * 185.05372 * 15 14 13 18 18 N 1.31585 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47208 * 90.00361 * 19 17 15 21 21 H 1.48502 * 109.47123 * 209.99835 * 19 17 15 22 22 H 1.48498 * 109.47166 * 329.99937 * 19 17 15 23 23 C 1.38894 * 120.01372 * 359.97438 * 13 12 11 24 24 C 1.38008 * 120.00434 * 0.02562 * 23 13 12 25 25 H 1.08998 * 109.46927 * 181.00643 * 1 2 3 26 26 H 1.08995 * 109.47025 * 301.00687 * 1 2 3 27 27 H 1.08997 * 109.47096 * 61.01072 * 1 2 3 28 28 H 1.09006 * 110.61555 * 78.44253 * 5 4 2 29 29 H 1.08996 * 110.61890 * 201.27885 * 5 4 2 30 30 H 1.09000 * 110.95786 * 278.91417 * 6 5 4 31 31 H 1.09001 * 111.00964 * 155.20627 * 6 5 4 32 32 H 0.97003 * 120.00199 * 23.15584 * 9 7 2 33 33 H 1.07993 * 120.00417 * 359.69977 * 11 10 9 34 34 H 1.07998 * 119.99625 * 179.97438 * 12 11 10 35 35 H 0.96997 * 120.00302 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.99891 * 180.02562 * 23 13 12 37 37 H 1.07999 * 120.00384 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6994 1.1568 5 6 3.2379 -1.3651 0.7630 6 6 2.9189 -1.8925 -0.6630 7 6 2.0540 -0.7465 -1.2420 8 1 1.2246 -1.1504 -1.8226 9 7 2.8711 0.1447 -2.0692 10 6 3.0448 -0.1277 -3.4291 11 6 3.8194 0.7179 -4.2139 12 6 3.9911 0.4482 -5.5565 13 6 3.3893 -0.6680 -6.1234 14 8 3.5581 -0.9327 -7.4445 15 6 3.0440 -2.0898 -7.9074 16 1 2.4561 -2.7187 -7.2552 17 6 3.2699 -2.4725 -9.2204 18 7 3.9858 -1.7061 -10.0152 19 14 2.5582 -4.0761 -9.8616 20 1 1.2081 -3.8271 -10.4279 21 1 3.4453 -4.6235 -10.9193 22 1 2.4554 -5.0525 -8.7475 23 6 2.6150 -1.5134 -5.3392 24 6 2.4430 -1.2442 -3.9966 25 1 -0.3633 -1.0275 0.0181 26 1 -0.3633 0.5294 0.8808 27 1 -0.3633 0.4980 -0.8989 28 1 4.0685 -0.6598 0.7348 29 1 3.4599 -2.1908 1.4389 30 1 2.3521 -2.8225 -0.6170 31 1 3.8314 -2.0232 -1.2446 32 1 3.2916 0.9240 -1.6732 33 1 4.2833 1.5883 -3.7743 34 1 4.5928 1.1056 -6.1665 35 1 4.1442 -1.9740 -10.9339 36 1 2.1476 -2.3814 -5.7801 37 1 1.8406 -1.9014 -3.3869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147385082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:09 Heat of formation + Delta-G solvation = -41.924748 kcal Electronic energy + Delta-G solvation = -19326.700687 eV Core-core repulsion = 16262.801971 eV Total energy + Delta-G solvation = -3063.898716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02605 -38.83883 -36.87195 -34.33573 -32.15201 -31.70123 -30.79923 -30.12674 -27.37420 -25.38054 -24.97512 -22.48124 -22.20543 -21.02727 -20.28108 -17.97184 -17.30537 -16.69933 -16.05220 -15.98305 -15.33761 -14.71574 -14.43607 -14.09619 -13.57118 -13.51259 -13.24399 -13.03373 -12.70386 -12.65186 -12.46449 -12.25332 -11.71368 -11.58475 -11.46047 -11.23004 -11.14723 -10.97055 -10.88928 -10.57078 -10.37799 -9.90060 -9.24825 -9.21195 -8.47876 -8.20359 -6.45093 -6.34095 -3.91529 2.17397 2.52929 3.17307 3.18231 3.22775 3.56797 3.79722 4.04611 4.45560 4.58065 4.68878 4.83694 4.91161 5.07953 5.17224 5.19454 5.39418 5.39811 5.48305 5.59612 5.66472 5.74392 5.78521 5.81999 5.92858 5.96119 6.18942 6.26507 6.42984 6.68498 6.80924 6.95203 7.07176 7.31682 7.43063 7.58289 7.93005 8.09833 8.17382 9.11825 9.85772 10.84603 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033342 B = 0.003927 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.579487 B = 7129.123106 C = 7500.540341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.068 3.932 3 H 0.071 0.929 4 O -0.376 6.376 5 C 0.048 3.952 6 C -0.175 4.175 7 C 0.132 3.868 8 H 0.092 0.908 9 N -0.750 5.750 10 C 0.121 3.879 11 C -0.141 4.141 12 C -0.150 4.150 13 C 0.115 3.885 14 O -0.188 6.188 15 C -0.387 4.387 16 H 0.088 0.912 17 C 0.037 3.963 18 N -0.868 5.868 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.192 4.192 24 C -0.142 4.142 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.390 0.610 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 1.386 17.990 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 H 0.089 0.911 4 O -0.295 6.295 5 C -0.028 4.028 6 C -0.214 4.214 7 C 0.024 3.976 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.023 3.977 11 C -0.163 4.163 12 C -0.169 4.169 13 C 0.062 3.938 14 O -0.093 6.093 15 C -0.464 4.464 16 H 0.106 0.894 17 C -0.166 4.166 18 N -0.505 5.505 19 Si 0.763 3.237 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.212 4.212 24 C -0.164 4.164 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.224 0.776 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.685 1.356 17.791 18.219 hybrid contribution -0.068 -0.601 -0.350 0.698 sum -3.753 0.755 17.441 17.856 Atomic orbital electron populations 1.21891 0.93145 1.02998 1.02599 1.22978 0.95523 0.95856 0.84721 0.91134 1.88882 1.39936 1.67711 1.33006 1.23586 0.87451 0.96257 0.95542 1.23747 1.01961 0.99098 0.96602 1.22068 0.93723 0.90220 0.91575 0.89055 1.44255 1.58286 1.30077 1.05965 1.17367 1.00359 0.96494 0.83443 1.20113 1.02862 1.00082 0.93287 1.20011 1.04206 0.98628 0.94100 1.19252 0.94900 0.94155 0.85492 1.83986 1.69657 1.38596 1.17012 1.21236 1.32010 0.96967 0.96215 0.89445 1.25217 0.96966 0.99211 0.95251 1.70048 1.36911 1.36947 1.06581 0.85767 0.78634 0.80442 0.78882 1.20037 1.20379 1.19356 1.21005 1.04110 1.02434 0.93607 1.20307 1.03367 0.97702 0.95020 0.91729 0.91852 0.90920 0.92287 0.89148 0.90270 0.89295 0.77577 0.87186 0.86435 0.92271 0.85547 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.36 37.16 0.35 -1.02 16 2 C 0.07 0.70 3.84 -26.16 -0.10 0.60 16 3 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 4 O -0.38 -4.34 11.19 -35.23 -0.39 -4.74 16 5 C 0.05 0.47 7.73 38.40 0.30 0.77 16 6 C -0.17 -1.87 6.91 -24.53 -0.17 -2.04 16 7 C 0.13 1.51 2.68 -66.41 -0.18 1.33 16 8 H 0.09 1.10 6.06 -51.93 -0.31 0.79 16 9 N -0.75 -9.65 5.27 -50.64 -0.27 -9.92 16 10 C 0.12 2.01 6.66 -83.70 -0.56 1.45 16 11 C -0.14 -2.48 9.89 -39.40 -0.39 -2.87 16 12 C -0.15 -3.15 9.98 -39.42 -0.39 -3.54 16 13 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.42 9.76 -0.04 0.00 -5.42 16 15 C -0.39 -10.98 9.48 30.87 0.29 -10.68 16 16 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 17 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 18 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 19 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.19 -4.16 9.16 -39.42 -0.36 -4.52 16 24 C -0.14 -2.58 9.21 -39.40 -0.36 -2.94 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 32 H 0.39 4.39 8.32 -40.82 -0.34 4.05 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 37 H 0.11 1.68 6.24 -52.49 -0.33 1.36 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -31.14 308.20 -7.09 -38.23 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.88 Total: 6.55 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.93 Total: -20.02 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.49 Total: -35.06 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.39 Total: -10.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.14 -7.09 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147385082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.690 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds