Wall clock time and date at job start Mon Mar 30 2020 00:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.55637 * 2 1 4 4 O 1.44377 * 110.61924 * 237.12114 * 2 1 3 5 5 C 1.43742 * 106.98006 * 201.43979 * 4 2 1 6 6 C 1.54106 * 107.29101 * 26.51174 * 5 4 2 7 7 C 1.54811 * 104.30694 * 357.90556 * 6 5 4 8 8 H 1.08998 * 110.90998 * 220.99242 * 7 6 5 9 9 N 1.46495 * 110.90840 * 97.38013 * 7 6 5 10 10 C 1.39786 * 119.99439 * 86.45626 * 9 7 6 11 11 C 1.38948 * 120.00844 * 359.72498 * 10 9 7 12 12 C 1.38018 * 119.99388 * 179.76851 * 11 10 9 13 13 C 1.38898 * 120.00291 * 0.50935 * 12 11 10 14 14 O 1.35795 * 119.99352 * 179.77249 * 13 12 11 15 15 C 1.34812 * 117.00631 * 174.43746 * 14 13 12 16 16 H 1.08005 * 119.99343 * 5.04617 * 15 14 13 17 17 C 1.38612 * 120.00241 * 185.05269 * 15 14 13 18 18 N 1.31577 * 120.00433 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99834 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47546 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47481 * 120.00001 * 19 17 15 22 22 H 1.48507 * 109.47208 * 239.99954 * 19 17 15 23 23 C 1.38897 * 120.01467 * 359.73988 * 13 12 11 24 24 C 1.38013 * 120.00660 * 0.02562 * 23 13 12 25 25 H 1.08996 * 109.47344 * 181.42520 * 1 2 3 26 26 H 1.08999 * 109.46589 * 301.43004 * 1 2 3 27 27 H 1.08997 * 109.46950 * 61.41994 * 1 2 3 28 28 H 1.08997 * 109.87734 * 267.09155 * 5 4 2 29 29 H 1.09000 * 109.88074 * 145.93041 * 5 4 2 30 30 H 1.08995 * 110.48729 * 116.64944 * 6 5 4 31 31 H 1.09000 * 110.48849 * 239.16415 * 6 5 4 32 32 H 0.96999 * 120.00687 * 266.45585 * 9 7 6 33 33 H 1.08004 * 120.00057 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.99470 * 180.27082 * 12 11 10 35 35 H 0.97004 * 120.00435 * 180.02562 * 18 17 15 36 36 H 1.08007 * 119.99945 * 180.02562 * 23 13 12 37 37 H 1.08003 * 120.00354 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 8 2.0384 -0.7336 -1.1348 5 6 3.3839 -1.1242 -0.8136 6 6 3.4795 -1.2178 0.7217 7 6 2.0773 -0.7900 1.2191 8 1 2.1549 -0.1491 2.0973 9 7 1.2426 -1.9606 1.5003 10 6 1.3015 -2.5758 2.7541 11 6 2.1557 -2.0807 3.7317 12 6 2.2101 -2.6855 4.9712 13 6 1.4187 -3.7954 5.2377 14 8 1.4757 -4.3931 6.4557 15 6 0.6010 -5.3920 6.6890 16 1 -0.0470 -5.7381 5.8973 17 6 0.5333 -5.9748 7.9448 18 7 1.3230 -5.5535 8.9092 19 14 -0.6793 -7.3585 8.2681 20 1 -1.4467 -7.6439 7.0292 21 1 0.0599 -8.5773 8.6847 22 1 -1.6155 -6.9542 9.3476 23 6 0.5685 -4.2937 4.2589 24 6 0.5102 -3.6864 3.0210 25 1 -0.3634 -1.0273 0.0256 26 1 -0.3632 0.5359 0.8769 27 1 -0.3633 0.4916 -0.9024 28 1 4.0853 -0.3765 -1.1836 29 1 3.6044 -2.0946 -1.2584 30 1 3.6975 -2.2407 1.0287 31 1 4.2423 -0.5366 1.0987 32 1 0.6492 -2.3088 0.8166 33 1 2.7741 -1.2201 3.5231 34 1 2.8708 -2.2980 5.7325 35 1 1.2758 -5.9616 9.7879 36 1 -0.0471 -5.1566 4.4666 37 1 -0.1513 -4.0737 2.2600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147385276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:10 Heat of formation + Delta-G solvation = -39.625634 kcal Electronic energy + Delta-G solvation = -19384.057911 eV Core-core repulsion = 16320.258892 eV Total energy + Delta-G solvation = -3063.799019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03474 -38.80268 -36.81389 -34.25553 -32.14015 -31.70758 -30.85737 -30.05442 -27.15700 -25.88131 -24.92455 -22.27611 -21.90836 -21.22281 -20.14653 -17.82698 -17.49556 -16.72634 -16.23121 -15.62130 -15.34051 -14.84478 -14.41708 -14.18822 -13.60434 -13.49389 -13.35785 -12.74878 -12.65248 -12.54986 -12.46567 -12.32329 -11.62905 -11.53175 -11.41482 -11.28443 -11.17485 -10.95654 -10.86003 -10.51465 -10.34393 -9.85602 -9.23398 -9.18876 -8.45499 -8.17903 -6.41253 -6.32692 -3.89969 2.19541 2.55663 3.17938 3.19501 3.24645 3.59866 3.81779 4.05891 4.47730 4.52333 4.71071 4.88603 4.90341 5.06033 5.19400 5.23680 5.35644 5.43724 5.50231 5.63873 5.65659 5.71661 5.73423 5.78570 5.97678 6.01812 6.21803 6.24641 6.53110 6.72154 6.85875 6.91054 7.12904 7.32490 7.44706 7.63775 7.97136 8.11790 8.23459 9.13416 9.87726 10.86091 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045189 B = 0.003748 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.465468 B = 7468.539925 C = 7722.915914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 H 0.077 0.923 4 O -0.376 6.376 5 C 0.051 3.949 6 C -0.178 4.178 7 C 0.134 3.866 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.124 3.876 11 C -0.146 4.146 12 C -0.151 4.151 13 C 0.114 3.886 14 O -0.189 6.189 15 C -0.387 4.387 16 H 0.089 0.911 17 C 0.036 3.964 18 N -0.869 5.869 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.189 4.189 24 C -0.141 4.141 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.394 0.606 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 9.489 -16.141 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.007 3.993 3 H 0.095 0.905 4 O -0.296 6.296 5 C -0.026 4.026 6 C -0.217 4.217 7 C 0.026 3.974 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.026 3.974 11 C -0.168 4.168 12 C -0.171 4.171 13 C 0.061 3.939 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.106 0.894 17 C -0.167 4.167 18 N -0.505 5.505 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.209 4.209 24 C -0.163 4.163 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.229 0.771 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.074 9.545 -15.854 18.536 hybrid contribution -0.600 -0.849 0.052 1.041 sum 0.474 8.696 -15.801 18.042 Atomic orbital electron populations 1.21701 0.92786 1.03174 1.02356 1.23446 0.95772 0.95196 0.84891 0.90479 1.88880 1.28114 1.73680 1.38925 1.23092 0.84241 1.00098 0.95174 1.23552 0.98638 1.04009 0.95535 1.22150 0.89398 0.88372 0.97482 0.89102 1.44190 1.48508 1.32591 1.12774 1.17387 0.98979 0.95102 0.85924 1.20179 1.01906 1.01590 0.93097 1.20023 1.03174 0.96770 0.97085 1.19245 0.94945 0.92674 0.87033 1.83985 1.53079 1.45577 1.26724 1.21286 1.16474 1.11157 0.97420 0.89394 1.25212 0.98085 0.98922 0.94469 1.70056 1.36911 1.41002 1.02579 0.85700 0.79419 0.79817 0.78777 1.19255 1.20311 1.20304 1.20995 1.03522 1.03000 0.93414 1.20232 1.01784 0.96969 0.97282 0.91553 0.90820 0.92015 0.92662 0.90089 0.89522 0.90425 0.77089 0.87221 0.86568 0.92352 0.85502 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.34 37.16 0.35 -0.98 16 2 C 0.06 0.64 3.84 -25.55 -0.10 0.55 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.38 -4.35 11.23 -35.23 -0.40 -4.75 16 5 C 0.05 0.50 7.70 37.74 0.29 0.79 16 6 C -0.18 -1.83 6.75 -25.20 -0.17 -2.00 16 7 C 0.13 1.49 2.78 -65.80 -0.18 1.31 16 8 H 0.09 1.00 6.71 -51.93 -0.35 0.66 16 9 N -0.74 -9.89 4.79 -50.06 -0.24 -10.13 16 10 C 0.12 2.09 6.66 -83.70 -0.56 1.53 16 11 C -0.15 -2.57 9.22 -39.40 -0.36 -2.94 16 12 C -0.15 -3.19 9.98 -39.42 -0.39 -3.58 16 13 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 14 O -0.19 -5.48 9.76 -0.04 0.00 -5.48 16 15 C -0.39 -11.01 9.48 30.87 0.29 -10.72 16 16 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 17 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 18 N -0.87 -26.01 13.67 55.48 0.76 -25.25 16 19 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 C -0.19 -4.15 9.16 -39.42 -0.36 -4.51 16 24 C -0.14 -2.59 9.89 -39.40 -0.39 -2.98 16 25 H 0.07 0.66 6.28 -51.93 -0.33 0.33 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.39 4.96 6.92 -40.82 -0.28 4.67 16 33 H 0.11 1.64 6.32 -52.48 -0.33 1.31 16 34 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -31.31 305.63 -7.03 -38.33 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.79 Total: 6.84 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.94 Total: -20.10 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.52 Total: -35.38 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.40 Total: -10.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.31 -7.03 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147385276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.292 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds