Wall clock time and date at job start Mon Mar 30 2020 00:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.33561 * 2 1 4 4 O 1.44426 * 110.36858 * 122.24837 * 2 1 3 5 5 C 1.44530 * 105.22474 * 159.24883 * 4 2 1 6 6 C 1.54481 * 104.87602 * 319.64129 * 5 4 2 7 7 C 1.54477 * 110.37269 * 237.74784 * 2 1 3 8 8 H 1.09002 * 110.51307 * 335.83799 * 7 2 1 9 9 N 1.46502 * 110.51170 * 98.41059 * 7 2 1 10 10 C 1.39677 * 119.99878 * 204.99892 * 9 7 2 11 11 C 1.39002 * 120.04164 * 359.97438 * 10 9 7 12 12 C 1.38146 * 120.06247 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.14141 * 0.02562 * 12 11 10 14 14 C 1.38913 * 120.08146 * 359.95466 * 13 12 11 15 15 O 1.35750 * 120.03378 * 180.02562 * 14 13 12 16 16 C 1.34827 * 117.00263 * 174.48235 * 15 14 13 17 17 H 1.08002 * 120.00212 * 5.08218 * 16 15 14 18 18 C 1.38651 * 120.00199 * 185.07796 * 16 15 14 19 19 N 1.31562 * 119.99998 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00267 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47102 * 89.99502 * 20 18 16 22 22 H 1.48494 * 109.47395 * 209.99757 * 20 18 16 23 23 H 1.48505 * 109.46903 * 329.99750 * 20 18 16 24 24 C 1.38742 * 120.03606 * 179.72837 * 10 9 7 25 25 H 1.08993 * 109.47132 * 180.69863 * 1 2 3 26 26 H 1.08999 * 109.46795 * 60.70306 * 1 2 3 27 27 H 1.08994 * 109.47253 * 300.70214 * 1 2 3 28 28 H 1.08999 * 110.39823 * 200.76126 * 5 4 2 29 29 H 1.08997 * 110.26984 * 78.46678 * 5 4 2 30 30 H 1.08999 * 110.51216 * 265.25996 * 6 5 4 31 31 H 1.09002 * 110.62596 * 142.60197 * 6 5 4 32 32 H 0.96998 * 119.99738 * 25.00442 * 9 7 2 33 33 H 1.08000 * 119.96697 * 359.97438 * 11 10 9 34 34 H 1.07998 * 119.93042 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.96216 * 179.97438 * 13 12 11 36 36 H 0.96996 * 120.00259 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.07328 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0327 -0.7225 1.1451 5 6 3.3874 -1.0880 0.7985 6 6 3.3178 -1.5051 -0.6873 7 6 2.0678 -0.7728 -1.2247 8 1 1.3276 -1.4903 -1.5788 9 7 2.4347 0.1556 -2.2970 10 6 2.4403 -0.2780 -3.6247 11 6 2.0984 -1.5904 -3.9296 12 6 2.1043 -2.0199 -5.2425 13 6 2.4503 -1.1473 -6.2564 14 6 2.7925 0.1656 -5.9585 15 8 3.1317 1.0223 -6.9554 16 6 3.3416 2.3091 -6.6119 17 1 3.3183 2.6012 -5.5724 18 6 3.5873 3.2574 -7.5930 19 7 3.7915 4.5131 -7.2578 20 14 3.6269 2.7525 -9.3911 21 1 2.2637 2.8701 -9.9684 22 1 4.5573 3.6398 -10.1340 23 1 4.0910 1.3460 -9.5001 24 6 2.7821 0.6021 -4.6413 25 1 -0.3633 -1.0275 0.0125 26 1 -0.3633 0.5029 -0.8962 27 1 -0.3633 0.5247 0.8836 28 1 3.7241 -1.9238 1.4118 29 1 4.0525 -0.2334 0.9220 30 1 3.1955 -2.5846 -0.7757 31 1 4.2106 -1.1779 -1.2202 32 1 2.6737 1.0714 -2.0848 33 1 1.8288 -2.2752 -3.1391 34 1 1.8388 -3.0401 -5.4770 35 1 2.4543 -1.4862 -7.2818 36 1 3.9630 5.1766 -7.9442 37 1 3.0439 1.6235 -4.4076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147581024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:16 Heat of formation + Delta-G solvation = -62.721406 kcal Electronic energy + Delta-G solvation = -19488.145606 eV Core-core repulsion = 16423.345079 eV Total energy + Delta-G solvation = -3064.800527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14882 -40.48432 -38.57239 -35.93767 -34.38557 -32.63261 -32.27608 -30.66819 -29.42824 -27.15702 -26.32782 -23.62863 -23.04092 -22.67982 -21.42916 -19.79628 -19.19586 -17.69166 -17.28200 -16.86656 -16.64652 -16.39932 -15.94107 -15.66415 -15.52113 -14.97198 -14.67745 -14.38906 -14.17182 -14.09391 -13.82181 -13.38727 -13.22670 -12.89955 -12.68787 -12.59679 -12.33581 -12.21415 -12.15203 -11.96341 -11.64349 -11.37832 -11.01248 -10.83504 -10.66110 -9.18920 -8.48477 -8.29922 -6.20860 0.72968 0.86334 1.32115 1.36701 1.53130 2.29042 2.34752 2.82414 2.95444 3.14672 3.24961 3.59290 3.66774 3.91456 4.09464 4.18584 4.24902 4.35939 4.39627 4.57656 4.62536 4.66275 4.71608 4.86198 4.88732 4.97082 5.01566 5.05222 5.08718 5.21295 5.41943 5.45464 5.73603 5.75253 5.85434 5.90577 6.16143 6.55180 6.75354 6.86755 7.63692 8.63224 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.004448 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.005425 B = 6293.364124 C = 6789.872601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 H 0.070 0.930 4 O -0.383 6.383 5 C 0.044 3.956 6 C -0.170 4.170 7 C 0.127 3.873 8 H 0.101 0.899 9 N -0.735 5.735 10 C 0.254 3.746 11 C -0.256 4.256 12 C -0.026 4.026 13 C -0.249 4.249 14 C 0.158 3.842 15 O -0.246 6.246 16 C -0.396 4.396 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.263 1.263 24 C -0.309 4.309 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.142 0.858 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.284 0.716 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -13.482 13.410 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.007 3.993 3 H 0.088 0.912 4 O -0.302 6.302 5 C -0.032 4.032 6 C -0.209 4.209 7 C 0.021 3.979 8 H 0.119 0.881 9 N -0.366 5.366 10 C 0.151 3.849 11 C -0.278 4.278 12 C -0.045 4.045 13 C -0.270 4.270 14 C 0.108 3.892 15 O -0.153 6.153 16 C -0.472 4.472 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.333 4.333 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.065 -13.505 13.452 19.490 hybrid contribution 0.554 1.175 -0.709 1.480 sum -3.511 -12.330 12.743 18.076 Atomic orbital electron populations 1.21779 0.91706 1.03554 1.02972 1.23198 0.96516 0.95382 0.84200 0.91228 1.89166 1.28342 1.74738 1.37989 1.23534 0.83795 1.00824 0.95080 1.23459 0.98836 1.02282 0.96365 1.22374 0.96645 0.91910 0.87000 0.88085 1.44660 1.76159 1.13682 1.02057 1.17525 0.91051 0.92620 0.83708 1.20622 1.15135 0.94489 0.97564 1.20883 0.93557 0.99051 0.90999 1.20326 1.14384 0.91415 1.00858 1.19402 0.91799 0.90667 0.87317 1.83526 1.78808 1.19000 1.33947 1.20689 1.49759 0.81058 0.95694 0.90288 1.25268 0.95639 0.93843 1.04121 1.69730 1.48647 1.01818 1.36422 0.85227 0.78971 0.78884 0.77703 1.19091 1.19242 1.18742 1.20561 1.19476 1.00720 0.92532 0.91014 0.90971 0.91160 0.87054 0.92074 0.88808 0.90691 0.76763 0.84083 0.82487 0.86090 0.90674 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.52 71.98 0.69 -1.86 16 2 C 0.07 1.31 3.63 31.10 0.11 1.43 16 3 H 0.07 1.43 7.76 -2.39 -0.02 1.41 16 4 O -0.38 -8.15 11.35 -148.98 -1.69 -9.84 16 5 C 0.04 0.75 7.63 72.49 0.55 1.31 16 6 C -0.17 -3.15 6.88 31.61 0.22 -2.94 16 7 C 0.13 2.67 2.73 46.01 0.13 2.80 16 8 H 0.10 2.05 6.13 -2.39 -0.01 2.03 16 9 N -0.74 -20.13 5.23 -314.21 -1.64 -21.77 16 10 C 0.25 8.76 6.65 38.19 0.25 9.02 16 11 C -0.26 -7.60 9.22 22.43 0.21 -7.39 16 12 C -0.03 -0.80 10.03 22.23 0.22 -0.58 16 13 C -0.25 -9.71 9.99 22.41 0.22 -9.49 16 14 C 0.16 7.55 6.65 22.56 0.15 7.70 16 15 O -0.25 -13.61 8.58 -22.71 -0.19 -13.81 16 16 C -0.40 -23.64 9.94 67.92 0.68 -22.97 16 17 H 0.08 4.95 5.43 -2.91 -0.02 4.93 16 18 C 0.01 0.54 5.49 84.83 0.47 1.01 16 19 N -0.93 -55.74 13.96 21.61 0.30 -55.44 16 20 Si 0.97 46.01 28.62 68.60 1.96 47.97 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.31 -13.71 9.01 22.52 0.20 -13.51 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.59 7.97 -2.39 -0.02 1.58 16 32 H 0.40 10.88 8.40 -92.71 -0.78 10.10 16 33 H 0.14 3.26 6.20 -2.91 -0.02 3.24 16 34 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.10 5.09 5.63 -2.91 -0.02 5.07 16 Total: -1.00 -67.26 307.24 3.14 -64.13 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.31 Total: 24.23 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 4.10 Total: -35.47 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.34 Total: -77.21 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.89 Total: -23.65 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.96 Total: 47.97 kcal Total: -67.26 3.14 -64.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147581024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.408 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds