Wall clock time and date at job start Mon Mar 30 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47053 * 2 1 4 4 O 1.42898 * 109.47093 * 120.00520 * 2 1 3 5 5 C 1.35896 * 116.99944 * 155.79290 * 4 2 1 6 6 C 1.38761 * 120.05458 * 5.49020 * 5 4 2 7 7 C 1.38122 * 119.94021 * 180.02562 * 6 5 4 8 8 C 1.38285 * 120.05937 * 0.02562 * 7 6 5 9 9 C 1.38246 * 120.11429 * 0.02562 * 8 7 6 10 10 C 1.38172 * 120.04968 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.02484 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.46935 * 260.02146 * 11 10 9 13 13 C 1.34774 * 119.99859 * 179.97438 * 12 11 10 14 14 O 1.21692 * 120.00104 * 0.02562 * 13 12 11 15 15 C 1.46381 * 120.00004 * 180.02562 * 13 12 11 16 16 H 1.07990 * 119.99839 * 6.28871 * 15 13 12 17 17 C 1.40053 * 119.99725 * 186.28657 * 15 13 12 18 18 N 1.30672 * 119.99968 * 353.61149 * 17 15 13 19 19 Si 1.86797 * 119.99554 * 173.60794 * 17 15 13 20 20 H 1.48504 * 109.46992 * 94.97911 * 19 17 15 21 21 H 1.48508 * 109.46817 * 214.97507 * 19 17 15 22 22 H 1.48495 * 109.47494 * 334.97381 * 19 17 15 23 23 H 1.09000 * 109.46901 * 299.99654 * 1 2 3 24 24 H 1.09000 * 109.47261 * 59.99600 * 1 2 3 25 25 H 1.09003 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46901 * 240.00346 * 2 1 3 27 27 H 1.09000 * 109.46984 * 60.00397 * 3 2 1 28 28 H 1.08996 * 109.47179 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47414 * 300.00306 * 3 2 1 30 30 H 1.07997 * 120.02565 * 0.02562 * 6 5 4 31 31 H 1.08008 * 119.96788 * 179.72767 * 7 6 5 32 32 H 1.08007 * 119.94574 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.97327 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.47017 * 20.02506 * 11 10 9 35 35 H 1.08999 * 109.46776 * 140.02081 * 11 10 9 36 36 H 0.96998 * 119.99995 * 0.02562 * 12 11 10 37 37 H 0.97006 * 119.99907 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2533 -1.2105 1.1033 6 6 4.0470 -0.9943 -0.0142 7 6 5.3137 -1.5414 -0.0763 8 6 5.7909 -2.3044 0.9736 9 6 5.0018 -2.5222 2.0876 10 6 3.7339 -1.9771 2.1547 11 6 2.8739 -2.2153 3.3691 12 7 1.9090 -3.2798 3.0829 13 6 1.0308 -3.6657 4.0297 14 8 1.0391 -3.1295 5.1221 15 6 0.0671 -4.7298 3.7440 16 1 0.1247 -5.2748 2.8135 17 6 -0.9296 -5.0409 4.6774 18 7 -0.9249 -4.4703 5.8529 19 14 -2.2657 -6.2715 4.2417 20 1 -1.8789 -7.6176 4.7353 21 1 -3.5437 -5.8600 4.8764 22 1 -2.4369 -6.3152 2.7673 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.6745 -0.3988 -0.8345 31 1 5.9302 -1.3771 -0.9478 32 1 6.7816 -2.7317 0.9229 33 1 5.3766 -3.1188 2.9061 34 1 3.5038 -2.5116 4.2079 35 1 2.3400 -1.2991 3.6215 36 1 1.9027 -3.7075 2.2123 37 1 -1.6155 -4.6855 6.4993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153631294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:06 Heat of formation + Delta-G solvation = -61.321749 kcal Electronic energy + Delta-G solvation = -19659.162379 eV Core-core repulsion = 16594.422546 eV Total energy + Delta-G solvation = -3064.739833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27584 -37.74913 -36.93473 -33.78643 -32.96335 -32.25749 -30.61419 -29.60400 -27.30263 -26.68219 -24.68857 -23.27008 -21.26976 -20.66078 -19.53797 -18.09333 -17.15734 -15.92495 -15.55937 -15.41767 -15.15514 -14.62582 -14.20111 -13.98776 -13.91206 -13.25295 -12.96397 -12.69879 -12.65532 -12.32840 -12.26823 -12.03196 -11.79144 -11.51909 -11.20352 -11.09945 -11.03434 -10.75447 -10.69324 -10.46503 -10.32151 -10.16259 -8.81684 -8.77340 -8.04656 -7.46253 -7.34497 -6.11319 -4.54611 1.41634 1.57146 3.17931 3.24917 3.29189 3.32125 3.85433 4.18524 4.67641 4.70842 4.83401 4.90372 4.92978 5.05437 5.13847 5.29643 5.40057 5.44824 5.48926 5.61159 5.65059 5.76980 5.86343 5.88455 6.04424 6.07449 6.17061 6.24967 6.45267 6.57496 6.61277 6.83801 6.96633 7.51075 7.62722 8.04441 8.21422 8.43467 9.10496 9.66251 10.68730 10.88477 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.005422 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.994213 B = 5162.486960 C = 5941.173111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.180 4.180 4 O -0.294 6.294 5 C 0.147 3.853 6 C -0.217 4.217 7 C -0.086 4.086 8 C -0.164 4.164 9 C -0.068 4.068 10 C -0.122 4.122 11 C 0.181 3.819 12 N -0.757 5.757 13 C 0.557 3.443 14 O -0.583 6.583 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.379 0.621 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 7.736 -14.584 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.237 4.237 4 O -0.207 6.207 5 C 0.101 3.899 6 C -0.236 4.236 7 C -0.104 4.104 8 C -0.182 4.182 9 C -0.086 4.086 10 C -0.124 4.124 11 C 0.056 3.944 12 N -0.412 5.412 13 C 0.361 3.639 14 O -0.466 6.466 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.131 4.131 18 N -0.398 5.398 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.189 1.189 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.210 0.790 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.993 8.180 -13.404 17.620 hybrid contribution -0.502 -0.686 -0.945 1.272 sum 7.491 7.493 -14.349 17.837 Atomic orbital electron populations 1.21841 0.92325 1.03732 1.02748 1.22411 0.95715 0.92299 0.87518 1.22400 1.01934 0.96355 1.03050 1.86300 1.28329 1.67940 1.38104 1.18890 0.84606 0.92645 0.93806 1.21237 0.96410 1.06986 0.98983 1.20863 0.94860 0.96472 0.98203 1.20993 1.00406 1.02091 0.94705 1.20991 0.92550 0.97159 0.97936 1.19638 0.96037 0.99983 0.96694 1.19594 0.90162 0.92880 0.91720 1.46093 1.37858 1.40016 1.17244 1.18203 0.79595 0.83407 0.82709 1.90591 1.72716 1.59423 1.23838 1.20864 1.13851 1.18942 1.04550 0.91557 1.25687 0.97817 0.95556 0.94020 1.70038 1.29923 1.35669 1.04182 0.86405 0.80395 0.80763 0.79450 1.19878 1.20446 1.18918 0.91282 0.90916 0.91169 0.91217 0.91314 0.91981 0.91286 0.85598 0.86283 0.86175 0.85293 0.92820 0.92312 0.79011 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.56 37.16 0.36 -1.39 16 2 C 0.08 0.94 2.85 -26.73 -0.08 0.87 16 3 C -0.18 -1.83 9.15 37.16 0.34 -1.49 16 4 O -0.29 -4.85 9.04 -19.41 -0.18 -5.03 16 5 C 0.15 2.32 6.57 -39.21 -0.26 2.06 16 6 C -0.22 -2.79 8.21 -39.43 -0.32 -3.11 16 7 C -0.09 -1.00 10.04 -39.61 -0.40 -1.39 16 8 C -0.16 -2.00 10.04 -39.56 -0.40 -2.40 16 9 C -0.07 -0.98 9.67 -39.60 -0.38 -1.36 16 10 C -0.12 -2.08 5.26 -104.47 -0.55 -2.63 16 11 C 0.18 3.83 5.46 -5.19 -0.03 3.80 16 12 N -0.76 -18.14 5.54 -62.90 -0.35 -18.49 16 13 C 0.56 16.53 7.74 -12.99 -0.10 16.43 16 14 O -0.58 -19.57 15.05 5.20 0.08 -19.49 16 15 C -0.54 -15.92 9.53 -35.63 -0.34 -16.25 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 17 C 0.09 2.54 5.49 -17.36 -0.10 2.44 16 18 N -0.77 -23.66 11.86 55.55 0.66 -23.00 16 19 Si 0.91 20.61 29.56 -169.99 -5.03 15.58 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.63 6.82 -51.93 -0.35 0.27 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.13 1.34 5.40 -52.49 -0.28 1.06 16 31 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.13 1.73 8.04 -52.49 -0.42 1.31 16 34 H 0.05 1.16 8.00 -51.93 -0.42 0.74 16 35 H 0.06 1.36 7.85 -51.93 -0.41 0.95 16 36 H 0.38 8.31 8.44 -40.82 -0.34 7.97 16 37 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -35.49 315.84 -7.37 -42.86 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.06 Total: 7.24 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.25 Total: -4.43 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.31 Total: -41.49 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.10 Total: -24.51 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.49 -7.37 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153631294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.463 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds