Wall clock time and date at job start Mon Mar 30 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47053 * 2 1 4 4 O 1.42898 * 109.47093 * 120.00520 * 2 1 3 5 5 C 1.35896 * 116.99944 * 155.79290 * 4 2 1 6 6 C 1.38761 * 120.05458 * 5.49020 * 5 4 2 7 7 C 1.38122 * 119.94021 * 180.02562 * 6 5 4 8 8 C 1.38285 * 120.05937 * 0.02562 * 7 6 5 9 9 C 1.38246 * 120.11429 * 0.02562 * 8 7 6 10 10 C 1.38172 * 120.04968 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.02484 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.46935 * 260.02146 * 11 10 9 13 13 C 1.34774 * 119.99859 * 179.97438 * 12 11 10 14 14 O 1.21692 * 120.00104 * 0.02562 * 13 12 11 15 15 C 1.46381 * 120.00004 * 180.02562 * 13 12 11 16 16 H 1.07990 * 119.99839 * 6.28871 * 15 13 12 17 17 C 1.40053 * 119.99725 * 186.28657 * 15 13 12 18 18 N 1.30672 * 119.99968 * 353.61149 * 17 15 13 19 19 Si 1.86797 * 119.99554 * 173.60794 * 17 15 13 20 20 H 1.48504 * 109.46992 * 94.97911 * 19 17 15 21 21 H 1.48508 * 109.46817 * 214.97507 * 19 17 15 22 22 H 1.48495 * 109.47494 * 334.97381 * 19 17 15 23 23 H 1.09000 * 109.46901 * 299.99654 * 1 2 3 24 24 H 1.09000 * 109.47261 * 59.99600 * 1 2 3 25 25 H 1.09003 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46901 * 240.00346 * 2 1 3 27 27 H 1.09000 * 109.46984 * 60.00397 * 3 2 1 28 28 H 1.08996 * 109.47179 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47414 * 300.00306 * 3 2 1 30 30 H 1.07997 * 120.02565 * 0.02562 * 6 5 4 31 31 H 1.08008 * 119.96788 * 179.72767 * 7 6 5 32 32 H 1.08007 * 119.94574 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.97327 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.47017 * 20.02506 * 11 10 9 35 35 H 1.08999 * 109.46776 * 140.02081 * 11 10 9 36 36 H 0.96998 * 119.99995 * 0.02562 * 12 11 10 37 37 H 0.97006 * 119.99907 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2533 -1.2105 1.1033 6 6 4.0470 -0.9943 -0.0142 7 6 5.3137 -1.5414 -0.0763 8 6 5.7909 -2.3044 0.9736 9 6 5.0018 -2.5222 2.0876 10 6 3.7339 -1.9771 2.1547 11 6 2.8739 -2.2153 3.3691 12 7 1.9090 -3.2798 3.0829 13 6 1.0308 -3.6657 4.0297 14 8 1.0391 -3.1295 5.1221 15 6 0.0671 -4.7298 3.7440 16 1 0.1247 -5.2748 2.8135 17 6 -0.9296 -5.0409 4.6774 18 7 -0.9249 -4.4703 5.8529 19 14 -2.2657 -6.2715 4.2417 20 1 -1.8789 -7.6176 4.7353 21 1 -3.5437 -5.8600 4.8764 22 1 -2.4369 -6.3152 2.7673 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.6745 -0.3988 -0.8345 31 1 5.9302 -1.3771 -0.9478 32 1 6.7816 -2.7317 0.9229 33 1 5.3766 -3.1188 2.9061 34 1 3.5038 -2.5116 4.2079 35 1 2.3400 -1.2991 3.6215 36 1 1.9027 -3.7075 2.2123 37 1 -1.6155 -4.6855 6.4993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153631294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:05 Heat of formation + Delta-G solvation = -86.283836 kcal Electronic energy + Delta-G solvation = -19660.244817 eV Core-core repulsion = 16594.422546 eV Total energy + Delta-G solvation = -3065.822271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39427 -39.38087 -38.57345 -35.51647 -34.53638 -34.01485 -32.07416 -30.75489 -28.72389 -28.16688 -26.41097 -24.29464 -22.55173 -21.67719 -21.64423 -19.49610 -18.89468 -17.49257 -17.07346 -16.72339 -16.43797 -16.00314 -15.82369 -15.49483 -15.32988 -14.67634 -14.37531 -14.32027 -13.75146 -13.59291 -13.32772 -13.23308 -13.15125 -13.06087 -12.76873 -12.70395 -12.63236 -12.29486 -12.08168 -12.01274 -11.66214 -11.47209 -10.93077 -10.09602 -9.72193 -9.47482 -9.07560 -8.29418 -6.85485 0.32315 0.51306 1.38802 1.40911 1.57026 2.24957 2.31297 2.47073 2.75234 3.36396 3.60338 3.74584 3.84474 3.89257 3.98213 4.11728 4.21100 4.34770 4.39766 4.59821 4.66567 4.71023 4.76078 4.80851 4.84422 4.96392 5.06411 5.19640 5.25447 5.31172 5.42003 5.53569 5.61086 5.86971 5.92916 6.20186 6.26999 6.58093 6.85906 7.54397 8.48648 8.67125 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.005422 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.994213 B = 5162.486960 C = 5941.173111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.067 3.933 3 C -0.173 4.173 4 O -0.331 6.331 5 C 0.132 3.868 6 C -0.213 4.213 7 C -0.072 4.072 8 C -0.158 4.158 9 C -0.074 4.074 10 C -0.154 4.154 11 C 0.191 3.809 12 N -0.743 5.743 13 C 0.538 3.462 14 O -0.635 6.635 15 C -0.573 4.573 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.823 5.823 19 Si 1.000 3.000 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.249 1.249 23 H 0.049 0.951 24 H 0.108 0.892 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.390 0.610 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 7.161 -18.121 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 C -0.230 4.230 4 O -0.246 6.246 5 C 0.086 3.914 6 C -0.232 4.232 7 C -0.090 4.090 8 C -0.176 4.176 9 C -0.093 4.093 10 C -0.155 4.155 11 C 0.067 3.933 12 N -0.396 5.396 13 C 0.343 3.657 14 O -0.523 6.523 15 C -0.610 4.610 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.818 3.182 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.172 1.172 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.169 0.831 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.148 0.852 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.222 0.778 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.750 7.614 -16.997 20.578 hybrid contribution -0.628 -0.437 0.097 0.771 sum 8.123 7.177 -16.900 20.077 Atomic orbital electron populations 1.21890 0.92460 1.02679 1.03562 1.22735 0.95744 0.93425 0.86909 1.22356 1.02026 0.94924 1.03727 1.86265 1.29099 1.68652 1.40544 1.19060 0.84950 0.92852 0.94513 1.21528 0.96531 1.06792 0.98311 1.21381 0.94381 0.94252 0.98942 1.21351 1.01242 1.01454 0.93543 1.21110 0.91861 0.97095 0.99242 1.19352 0.96843 1.03380 0.95910 1.19432 0.89547 0.90338 0.94001 1.45790 1.37147 1.40087 1.16570 1.18664 0.80549 0.83726 0.82810 1.90538 1.74447 1.61224 1.26099 1.21383 1.14489 1.19376 1.05718 0.89703 1.27010 1.00555 0.97761 0.93309 1.70206 1.31410 1.37740 1.05866 0.84990 0.75943 0.77299 0.79920 1.18432 1.19564 1.17231 0.93169 0.87353 0.93111 0.89332 0.92933 0.91704 0.88271 0.83058 0.82188 0.82959 0.85192 0.94221 0.95479 0.77756 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.56 71.98 0.69 -2.76 16 2 C 0.07 1.58 2.85 30.60 0.09 1.67 16 3 C -0.17 -3.22 9.15 71.98 0.66 -2.56 16 4 O -0.33 -11.26 9.04 -92.38 -0.83 -12.09 16 5 C 0.13 4.15 6.57 22.51 0.15 4.30 16 6 C -0.21 -4.84 8.21 22.37 0.18 -4.66 16 7 C -0.07 -1.35 10.04 22.25 0.22 -1.13 16 8 C -0.16 -3.33 10.04 22.28 0.22 -3.10 16 9 C -0.07 -2.11 9.67 22.26 0.22 -1.90 16 10 C -0.15 -5.38 5.26 -19.77 -0.10 -5.48 16 11 C 0.19 8.71 5.46 85.64 0.47 9.17 16 12 N -0.74 -37.57 5.54 -471.14 -2.61 -40.18 16 13 C 0.54 33.64 7.74 86.36 0.67 34.30 16 14 O -0.64 -45.45 15.05 -4.32 -0.07 -45.51 16 15 C -0.57 -34.32 9.53 24.83 0.24 -34.08 16 16 H 0.08 4.59 7.85 -2.92 -0.02 4.57 16 17 C 0.03 1.65 5.49 85.31 0.47 2.12 16 18 N -0.82 -52.35 11.86 21.84 0.26 -52.09 16 19 Si 1.00 42.35 29.56 68.60 2.03 44.38 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.71 6.36 -2.39 -0.02 1.70 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.16 6.82 -2.39 -0.02 1.15 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.15 2.61 5.40 -2.91 -0.02 2.59 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.13 3.52 8.04 -2.91 -0.02 3.50 16 34 H 0.04 1.87 8.00 -2.38 -0.02 1.85 16 35 H 0.03 1.37 7.85 -2.39 -0.02 1.36 16 36 H 0.39 17.77 8.44 -92.71 -0.78 16.99 16 37 H 0.27 15.74 8.29 -92.70 -0.77 14.97 16 Total: -1.00 -82.71 315.84 3.24 -79.47 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.29 Total: 30.12 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.17 Total: -4.11 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -2.35 Total: -92.27 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.90 Total: -57.60 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -82.71 3.24 -79.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153631294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -82.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds