Wall clock time and date at job start Mon Mar 30 2020 00:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99489 * 2 1 4 4 C 1.38743 * 120.04985 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94009 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05971 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94570 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47358 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.46866 * 239.99789 * 7 6 5 10 10 C 1.52997 * 109.47078 * 119.99967 * 7 6 5 11 11 C 1.50698 * 109.46933 * 184.99857 * 10 7 6 12 12 O 1.21294 * 120.00397 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99931 * 179.97438 * 11 10 7 14 14 C 1.37095 * 120.00032 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00020 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99994 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00078 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00001 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47351 * 89.99979 * 18 16 14 20 20 H 1.48498 * 109.46851 * 210.00148 * 18 16 14 21 21 H 1.48498 * 109.47160 * 329.99570 * 18 16 14 22 22 C 1.38266 * 120.10843 * 0.26960 * 6 5 4 23 23 C 1.38144 * 120.05502 * 359.45370 * 22 6 5 24 24 H 1.08997 * 109.47392 * 300.00221 * 1 2 3 25 25 H 1.08998 * 109.46766 * 59.99957 * 1 2 3 26 26 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.02963 * 359.95683 * 4 3 2 28 28 H 1.08002 * 119.96828 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 30 30 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 31 31 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 32 32 H 1.09000 * 109.46875 * 304.99652 * 10 7 6 33 33 H 1.08998 * 109.47192 * 65.00055 * 10 7 6 34 34 H 0.97001 * 120.00182 * 0.02562 * 13 11 10 35 35 H 0.96996 * 120.00449 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.97389 * 179.70576 * 22 6 5 37 37 H 1.08003 * 120.03042 * 180.27362 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 1 5.0666 4.8758 0.0004 9 6 3.5743 5.8007 1.2484 10 6 3.5754 5.8002 -1.2501 11 6 4.3520 7.0901 -1.3135 12 8 5.1546 7.3582 -0.4444 13 7 4.1547 7.9459 -2.3358 14 6 4.8616 9.1191 -2.3938 15 1 5.5762 9.3578 -1.6200 16 6 4.6578 10.0017 -3.4475 17 7 5.3350 11.1265 -3.5028 18 14 3.4213 9.5892 -4.7855 19 1 2.0874 10.1216 -4.4081 20 1 3.8549 10.2028 -6.0664 21 1 3.3387 8.1152 -4.9458 22 6 1.9210 3.6048 0.0051 23 6 1.2915 2.3751 -0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0209 0.3800 0.0017 28 1 5.1345 2.5751 0.0000 29 1 4.0695 6.7717 1.2487 30 1 2.4937 5.9434 1.2479 31 1 3.8668 5.2439 2.1386 32 1 3.7879 5.2041 -2.1376 33 1 2.5087 6.0200 -1.2069 34 1 3.5126 7.7317 -3.0306 35 1 5.1931 11.7424 -4.2386 36 1 1.3341 4.5114 0.0095 37 1 0.2129 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175984533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:26 Heat of formation + Delta-G solvation = -59.162009 kcal Electronic energy + Delta-G solvation = -19099.022586 eV Core-core repulsion = 16034.376406 eV Total energy + Delta-G solvation = -3064.646180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29671 -38.81099 -37.67872 -34.59153 -33.62259 -31.66038 -31.11131 -29.39486 -27.74383 -27.17447 -24.54956 -23.23614 -22.29826 -20.21629 -19.19484 -18.27995 -18.10897 -16.53828 -15.94586 -15.90686 -15.00575 -14.89853 -14.62332 -14.30778 -13.90581 -13.65888 -13.47732 -13.04471 -12.83377 -12.62086 -12.46724 -12.13091 -12.07839 -11.68539 -11.27308 -11.18400 -11.05391 -10.69910 -10.62183 -10.57813 -10.34698 -9.96360 -9.53043 -9.03502 -8.45640 -8.16007 -8.08725 -6.30549 -3.81614 1.30956 1.39869 3.04013 3.07734 3.11618 3.15817 3.72344 3.77207 4.11069 4.58444 4.67594 4.79978 4.89103 4.89759 5.09478 5.19173 5.21093 5.27282 5.37602 5.46675 5.52840 5.61976 5.76533 5.98094 6.01248 6.06179 6.16403 6.24281 6.30355 6.39353 6.49256 6.71378 6.79885 6.89863 7.27793 7.58294 8.16640 8.60457 8.96002 9.44379 9.84941 10.82676 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.003903 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.394691 B = 7172.926283 C = 7700.971827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.113 3.887 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.102 4.102 7 C -0.029 4.029 8 H 0.085 0.915 9 C -0.146 4.146 10 C -0.127 4.127 11 C 0.451 3.549 12 O -0.575 6.575 13 N -0.591 5.591 14 C -0.306 4.306 15 H 0.120 0.880 16 C 0.041 3.959 17 N -0.882 5.882 18 Si 0.879 3.121 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.075 4.075 23 C -0.206 4.206 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.371 0.629 35 H 0.273 0.727 36 H 0.125 0.875 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -19.702 4.627 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.068 3.932 4 C -0.169 4.169 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.047 4.047 8 H 0.104 0.896 9 C -0.203 4.203 10 C -0.167 4.167 11 C 0.238 3.762 12 O -0.458 6.458 13 N -0.229 5.229 14 C -0.434 4.434 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.522 5.522 18 Si 0.705 3.295 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.094 4.094 23 C -0.225 4.225 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.263 -19.495 5.094 22.612 hybrid contribution -1.310 -0.044 -1.285 1.836 sum -11.573 -19.538 3.809 23.026 Atomic orbital electron populations 1.23015 0.78669 1.03655 1.01340 1.86046 1.21171 1.27230 1.89082 1.19012 0.92393 0.83984 0.97796 1.20395 0.91275 0.98565 1.06650 1.20957 1.00022 0.90878 0.97726 1.20014 0.93534 0.95424 1.01248 1.19778 1.00224 0.89768 0.94964 0.89644 1.21949 1.00523 1.02155 0.95698 1.21622 1.00524 0.95716 0.98870 1.19837 0.86662 0.85833 0.83880 1.90515 1.38548 1.77243 1.39518 1.42278 1.38479 1.19444 1.22719 1.19458 1.20194 0.93386 1.10397 0.86269 1.25045 0.97757 0.95582 0.97792 1.69620 1.40648 1.09598 1.32359 0.86683 0.81869 0.78616 0.82331 1.19630 1.20185 1.19443 1.20846 0.94247 0.96902 0.97358 1.21192 0.99768 0.92394 1.09122 0.92758 0.92716 0.88476 0.85460 0.85208 0.89460 0.93702 0.93499 0.90358 0.90439 0.79654 0.91637 0.85701 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 10.50 -19.42 -0.20 -3.73 16 3 C 0.11 1.34 6.69 -39.21 -0.26 1.08 16 4 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 5 C -0.08 -0.95 9.66 -39.61 -0.38 -1.34 16 6 C -0.10 -1.35 4.78 -104.60 -0.50 -1.85 16 7 C -0.03 -0.44 2.21 -91.77 -0.20 -0.64 16 8 H 0.09 1.40 7.69 -51.93 -0.40 1.00 16 9 C -0.15 -2.27 8.74 37.16 0.32 -1.94 16 10 C -0.13 -2.09 4.92 -27.89 -0.14 -2.23 16 11 C 0.45 10.08 7.50 -10.99 -0.08 9.99 16 12 O -0.57 -14.84 13.54 5.54 0.08 -14.77 16 13 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 14 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 15 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 16 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 17 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 18 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 22 C -0.08 -0.91 8.75 -39.61 -0.35 -1.26 16 23 C -0.21 -2.30 9.04 -39.44 -0.36 -2.66 16 24 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.13 1.41 7.94 -52.49 -0.42 0.99 16 29 H 0.09 1.64 5.95 -51.93 -0.31 1.34 16 30 H 0.04 0.62 7.37 -51.93 -0.38 0.24 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 34 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 1.38 7.15 -52.49 -0.38 1.00 16 37 H 0.12 1.10 6.30 -52.48 -0.33 0.77 16 LS Contribution 308.55 15.07 4.65 4.65 Total: -1.00 -32.28 308.55 -5.96 -38.23 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.88 Total: 9.67 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.60 Total: -9.58 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.72 Total: -39.24 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.13 Total: -18.50 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.28 -5.96 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175984533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.928 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds