Wall clock time and date at job start Mon Mar 30 2020 00:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99489 * 2 1 4 4 C 1.38743 * 120.04985 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94009 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05971 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94570 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47358 * 359.97438 * 7 6 5 9 9 C 1.53006 * 109.46866 * 239.99789 * 7 6 5 10 10 C 1.52997 * 109.47078 * 119.99967 * 7 6 5 11 11 C 1.50698 * 109.46933 * 184.99857 * 10 7 6 12 12 O 1.21294 * 120.00397 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99931 * 179.97438 * 11 10 7 14 14 C 1.37095 * 120.00032 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00020 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99994 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00078 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00001 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47351 * 89.99979 * 18 16 14 20 20 H 1.48498 * 109.46851 * 210.00148 * 18 16 14 21 21 H 1.48498 * 109.47160 * 329.99570 * 18 16 14 22 22 C 1.38266 * 120.10843 * 0.26960 * 6 5 4 23 23 C 1.38144 * 120.05502 * 359.45370 * 22 6 5 24 24 H 1.08997 * 109.47392 * 300.00221 * 1 2 3 25 25 H 1.08998 * 109.46766 * 59.99957 * 1 2 3 26 26 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.02963 * 359.95683 * 4 3 2 28 28 H 1.08002 * 119.96828 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 30 30 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 31 31 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 32 32 H 1.09000 * 109.46875 * 304.99652 * 10 7 6 33 33 H 1.08998 * 109.47192 * 65.00055 * 10 7 6 34 34 H 0.97001 * 120.00182 * 0.02562 * 13 11 10 35 35 H 0.96996 * 120.00449 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.97389 * 179.70576 * 22 6 5 37 37 H 1.08003 * 120.03042 * 180.27362 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 1 5.0666 4.8758 0.0004 9 6 3.5743 5.8007 1.2484 10 6 3.5754 5.8002 -1.2501 11 6 4.3520 7.0901 -1.3135 12 8 5.1546 7.3582 -0.4444 13 7 4.1547 7.9459 -2.3358 14 6 4.8616 9.1191 -2.3938 15 1 5.5762 9.3578 -1.6200 16 6 4.6578 10.0017 -3.4475 17 7 5.3350 11.1265 -3.5028 18 14 3.4213 9.5892 -4.7855 19 1 2.0874 10.1216 -4.4081 20 1 3.8549 10.2028 -6.0664 21 1 3.3387 8.1152 -4.9458 22 6 1.9210 3.6048 0.0051 23 6 1.2915 2.3751 -0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0209 0.3800 0.0017 28 1 5.1345 2.5751 0.0000 29 1 4.0695 6.7717 1.2487 30 1 2.4937 5.9434 1.2479 31 1 3.8668 5.2439 2.1386 32 1 3.7879 5.2041 -2.1376 33 1 2.5087 6.0200 -1.2069 34 1 3.5126 7.7317 -3.0306 35 1 5.1931 11.7424 -4.2386 36 1 1.3341 4.5114 0.0095 37 1 0.2129 2.3201 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175984533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:26 Heat of formation + Delta-G solvation = -80.644744 kcal Electronic energy + Delta-G solvation = -19099.954147 eV Core-core repulsion = 16034.376406 eV Total energy + Delta-G solvation = -3065.577741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.19780 -40.38473 -38.75745 -36.23106 -35.17853 -33.73779 -31.96623 -30.39008 -29.10768 -27.90882 -26.41611 -24.28200 -23.23675 -21.55142 -20.97332 -19.92910 -19.06329 -17.88175 -17.18207 -16.70271 -16.58270 -16.12192 -16.02043 -15.43181 -15.29804 -14.91310 -14.58712 -14.46532 -14.10617 -14.05826 -13.90375 -13.30251 -13.16094 -12.86112 -12.74145 -12.41252 -12.21406 -12.02253 -11.99576 -11.88392 -11.67489 -11.44279 -11.42973 -10.32669 -10.20497 -9.90107 -8.99296 -8.40689 -6.00936 0.44394 0.48773 1.30723 1.35429 1.44414 1.98625 2.23381 2.43336 2.79782 3.00267 3.16463 3.82402 3.88297 4.00625 4.09072 4.23813 4.37710 4.39746 4.43368 4.50526 4.56205 4.65021 4.74291 4.76964 4.80245 4.92843 5.09730 5.15117 5.30104 5.36563 5.41454 5.56205 5.57435 5.80517 5.86550 5.98278 6.50264 6.59651 6.89726 7.41847 7.98868 8.77107 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.003903 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.394691 B = 7172.926283 C = 7700.971827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.108 3.892 4 C -0.160 4.160 5 C -0.083 4.083 6 C -0.113 4.113 7 C -0.023 4.023 8 H 0.065 0.935 9 C -0.142 4.142 10 C -0.115 4.115 11 C 0.451 3.549 12 O -0.616 6.616 13 N -0.594 5.594 14 C -0.328 4.328 15 H 0.057 0.943 16 C -0.016 4.016 17 N -0.936 5.936 18 Si 0.963 3.037 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.233 1.233 22 C -0.077 4.077 23 C -0.205 4.205 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.389 0.611 35 H 0.279 0.721 36 H 0.138 0.862 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 -22.308 3.321 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.101 4.101 6 C -0.114 4.114 7 C -0.041 4.041 8 H 0.083 0.917 9 C -0.199 4.199 10 C -0.155 4.155 11 C 0.240 3.760 12 O -0.501 6.501 13 N -0.235 5.235 14 C -0.457 4.457 15 H 0.075 0.925 16 C -0.214 4.214 17 N -0.577 5.577 18 Si 0.783 3.217 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.156 1.156 22 C -0.095 4.095 23 C -0.223 4.223 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.556 -22.134 3.804 26.233 hybrid contribution -0.243 0.698 -0.732 1.040 sum -13.800 -21.436 3.072 25.678 Atomic orbital electron populations 1.23320 0.76621 1.05435 1.02210 1.86036 1.23340 1.26882 1.88839 1.19211 0.92607 0.84706 0.97148 1.20569 0.91845 0.98746 1.06715 1.21057 1.00462 0.90965 0.97655 1.19763 0.94129 0.94066 1.03405 1.19636 0.99365 0.90986 0.94162 0.91673 1.21870 1.01297 1.00150 0.96627 1.21646 1.01088 0.92242 1.00523 1.21046 0.85730 0.87002 0.82222 1.90512 1.40302 1.78435 1.40865 1.42131 1.38901 1.18453 1.24013 1.19043 1.20707 0.96070 1.09906 0.92524 1.26103 1.00067 0.94709 1.00526 1.69802 1.42906 1.11162 1.33787 0.85390 0.78393 0.80538 0.77387 1.18032 1.20045 1.15647 1.21003 0.93702 0.97898 0.96917 1.21428 1.01034 0.91668 1.08209 0.91820 0.91796 0.86454 0.84447 0.84716 0.93508 0.91742 0.92503 0.88012 0.87301 0.77567 0.91187 0.84379 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.46 10.50 -92.42 -0.97 -7.43 16 3 C 0.11 2.28 6.69 22.51 0.15 2.43 16 4 C -0.16 -3.47 9.99 22.37 0.22 -3.24 16 5 C -0.08 -1.91 9.66 22.25 0.22 -1.69 16 6 C -0.11 -2.74 4.78 -19.85 -0.09 -2.83 16 7 C -0.02 -0.66 2.21 -11.54 -0.03 -0.69 16 8 H 0.06 2.16 7.69 -2.39 -0.02 2.14 16 9 C -0.14 -4.34 8.74 71.98 0.63 -3.71 16 10 C -0.12 -3.53 4.92 29.85 0.15 -3.38 16 11 C 0.45 20.22 7.50 87.66 0.66 20.88 16 12 O -0.62 -33.29 13.54 -3.07 -0.04 -33.33 16 13 N -0.59 -28.21 5.09 -306.98 -1.56 -29.77 16 14 C -0.33 -19.31 10.16 84.04 0.85 -18.45 16 15 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 16 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 17 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 18 Si 0.96 39.09 27.74 68.60 1.90 41.00 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 22 C -0.08 -1.61 8.75 22.25 0.19 -1.41 16 23 C -0.20 -3.85 9.04 22.36 0.20 -3.65 16 24 H 0.06 0.56 7.66 -2.39 -0.02 0.55 16 25 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 26 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.13 2.82 7.94 -2.91 -0.02 2.80 16 29 H 0.05 1.81 5.95 -2.39 -0.01 1.80 16 30 H 0.06 1.67 7.37 -2.39 -0.02 1.65 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.11 2.72 7.58 -2.39 -0.02 2.70 16 34 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 35 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.14 2.46 7.15 -2.91 -0.02 2.44 16 37 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 Total: -1.00 -74.99 308.55 4.85 -70.14 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.49 Total: 30.72 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.73 Total: -14.85 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -1.26 Total: -86.24 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.01 Total: -40.77 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 41.00 kcal Total: -74.99 4.85 -70.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175984533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.504 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds