Wall clock time and date at job start Sun Mar 29 2020 23:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 H 1.09005 * 109.46768 * 54.99781 * 3 2 1 5 5 C 1.52999 * 109.47326 * 174.99905 * 3 2 1 6 6 O 1.42902 * 109.47005 * 295.00437 * 3 2 1 7 7 C 1.35713 * 116.99943 * 155.13549 * 6 3 2 8 8 C 1.39011 * 119.90879 * 5.44338 * 7 6 3 9 9 C 1.37679 * 120.09454 * 179.97438 * 8 7 6 10 10 C 1.39800 * 119.90602 * 0.02763 * 9 8 7 11 11 C 1.47494 * 120.09276 * 179.97438 * 10 9 8 12 12 O 1.21626 * 119.99919 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.36903 * 120.00354 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99810 * 359.97438 * 14 13 11 16 16 C 1.39018 * 120.00475 * 179.97438 * 14 13 11 17 17 N 1.31385 * 120.00071 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00228 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47153 * 90.00324 * 18 16 14 20 20 H 1.48503 * 109.47000 * 210.00045 * 18 16 14 21 21 H 1.48502 * 109.47311 * 329.99793 * 18 16 14 22 22 C 1.39792 * 119.81286 * 0.27721 * 10 9 8 23 23 C 1.37683 * 119.90224 * 359.41518 * 22 10 9 24 24 H 1.09004 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47193 * 299.99987 * 1 2 3 26 26 H 1.08998 * 109.47346 * 59.99851 * 1 2 3 27 27 H 1.09001 * 109.47193 * 240.00013 * 2 1 3 28 28 H 1.08998 * 109.47346 * 120.00149 * 2 1 3 29 29 H 1.08995 * 109.46909 * 60.00560 * 5 3 2 30 30 H 1.09004 * 109.46858 * 180.02562 * 5 3 2 31 31 H 1.08991 * 109.47216 * 300.00040 * 5 3 2 32 32 H 1.08000 * 119.95217 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.04904 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00399 * 359.97438 * 13 11 10 35 35 H 0.96993 * 120.00347 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.04751 * 179.70170 * 22 10 9 37 37 H 1.08004 * 119.95067 * 180.30005 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.5550 3.4342 -1.2011 8 6 1.9186 4.1415 -0.0610 9 6 1.8123 5.5140 -0.0368 10 6 1.3372 6.1962 -1.1608 11 6 1.2211 7.6664 -1.1392 12 8 1.5392 8.2869 -0.1428 13 7 0.7624 8.3221 -2.2237 14 6 0.6550 9.6868 -2.2039 15 1 0.9375 10.2379 -1.3190 16 6 0.1824 10.3632 -3.3227 17 7 -0.1608 9.6929 -4.3993 18 14 0.0353 12.2252 -3.2953 19 1 1.3046 12.8291 -3.7740 20 1 -1.0788 12.6468 -4.1822 21 1 -0.2371 12.6800 -1.9081 22 6 0.9667 5.4805 -2.3030 23 6 1.0822 4.1086 -2.3210 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9994 0.9053 -0.7161 30 1 3.9281 2.4720 0.1262 31 1 3.8532 0.9570 1.0570 32 1 2.2851 3.6137 0.8070 33 1 2.0953 6.0628 0.8492 34 1 0.5090 7.8273 -3.0186 35 1 -0.4909 10.1648 -5.1797 36 1 0.5947 6.0032 -3.1717 37 1 0.8007 3.5553 -3.2047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175984719.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:30 Heat of formation + Delta-G solvation = -65.462449 kcal Electronic energy + Delta-G solvation = -19112.251110 eV Core-core repulsion = 16047.331723 eV Total energy + Delta-G solvation = -3064.919387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21597 -38.56712 -36.77081 -34.25180 -34.01554 -31.53239 -30.80256 -29.95644 -29.47451 -25.23957 -24.18874 -23.00715 -22.39821 -20.76479 -19.41291 -18.42707 -17.92040 -16.55382 -15.65397 -15.24480 -14.90343 -14.73894 -14.37420 -13.97645 -13.67733 -13.61450 -13.42537 -13.23432 -13.06049 -12.77069 -12.24472 -11.97794 -11.88767 -11.66812 -11.55280 -11.29377 -11.13669 -10.98618 -10.60990 -10.47597 -10.39867 -10.23131 -9.58960 -8.73139 -8.48320 -8.06996 -7.83318 -6.52657 -3.86462 1.45476 1.69134 3.15481 3.21517 3.23079 3.29220 3.70041 4.11636 4.45832 4.52742 4.68312 4.80349 4.94776 5.00974 5.12793 5.14664 5.27605 5.32300 5.34674 5.41676 5.63440 5.66425 5.70156 5.72713 5.85504 5.93215 5.98036 6.06348 6.09046 6.33624 6.57973 6.72273 6.93339 7.00826 7.46137 7.59771 7.99683 8.53896 9.09263 9.46014 10.01153 10.64566 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045148 B = 0.003660 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.031879 B = 7648.501614 C = 7966.971285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.074 0.926 5 C -0.181 4.181 6 O -0.309 6.309 7 C 0.128 3.872 8 C -0.217 4.217 9 C -0.038 4.038 10 C -0.131 4.131 11 C 0.471 3.529 12 O -0.600 6.600 13 N -0.546 5.546 14 C -0.295 4.295 15 H 0.107 0.893 16 C 0.023 3.977 17 N -0.892 5.892 18 Si 0.934 3.066 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.064 4.064 23 C -0.156 4.156 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.393 0.607 35 H 0.275 0.725 36 H 0.134 0.866 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -17.907 4.907 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.223 6.223 7 C 0.082 3.918 8 C -0.236 4.236 9 C -0.058 4.058 10 C -0.135 4.135 11 C 0.259 3.741 12 O -0.488 6.488 13 N -0.180 5.180 14 C -0.425 4.425 15 H 0.125 0.875 16 C -0.180 4.180 17 N -0.532 5.532 18 Si 0.761 3.239 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.084 4.084 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.663 -17.524 5.196 18.471 hybrid contribution -0.150 0.658 -0.397 0.783 sum 2.512 -16.866 4.799 17.715 Atomic orbital electron populations 1.21766 0.95114 1.01702 1.02612 1.21619 0.96873 0.94050 1.02964 1.22476 0.94967 0.93810 0.86459 0.90792 1.22388 0.95386 1.03416 1.02693 1.86034 1.83895 1.17114 1.35290 1.19089 0.96074 0.82056 0.94590 1.21148 1.09001 0.95066 0.98383 1.21001 0.94293 0.92626 0.97844 1.20259 1.03520 0.94931 0.94802 1.17668 0.85432 0.85981 0.84998 1.90591 1.56271 1.68432 1.33484 1.41882 1.54836 1.07696 1.13600 1.19824 1.39954 0.81692 1.01048 0.87510 1.25363 0.96704 1.01116 0.94832 1.69594 1.42762 1.37002 1.03861 0.85787 0.77979 0.81609 0.78558 1.20211 1.20757 1.19213 1.21249 0.96430 0.92975 0.97706 1.20269 1.05723 0.93806 0.97679 0.92592 0.92771 0.91797 0.90882 0.90272 0.91518 0.91483 0.91217 0.85526 0.84897 0.77168 0.91508 0.84853 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.81 37.16 0.36 -0.94 16 2 C -0.12 -0.95 5.64 -26.73 -0.15 -1.10 16 3 C 0.08 0.80 2.22 -26.73 -0.06 0.74 16 4 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 5 C -0.18 -1.62 9.16 37.16 0.34 -1.28 16 6 O -0.31 -4.09 9.32 -18.84 -0.18 -4.26 16 7 C 0.13 1.92 6.61 -39.01 -0.26 1.66 16 8 C -0.22 -3.27 8.21 -39.50 -0.32 -3.60 16 9 C -0.04 -0.69 9.59 -39.20 -0.38 -1.07 16 10 C -0.13 -2.71 5.88 -104.96 -0.62 -3.32 16 11 C 0.47 11.94 7.71 -12.49 -0.10 11.84 16 12 O -0.60 -17.10 15.91 5.25 0.08 -17.02 16 13 N -0.55 -14.29 5.23 -11.94 -0.06 -14.35 16 14 C -0.30 -8.30 9.68 -15.00 -0.15 -8.45 16 15 H 0.11 3.12 7.15 -52.48 -0.38 2.75 16 16 C 0.02 0.61 5.50 -17.45 -0.10 0.51 16 17 N -0.89 -23.97 13.05 55.50 0.72 -23.24 16 18 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 22 C -0.06 -1.15 9.53 -39.20 -0.37 -1.52 16 23 C -0.16 -2.45 9.97 -39.50 -0.39 -2.85 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.68 6.89 -51.93 -0.36 0.32 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.56 5.40 -52.49 -0.28 1.28 16 33 H 0.13 2.42 7.64 -52.49 -0.40 2.02 16 34 H 0.39 9.73 5.92 -40.82 -0.24 9.48 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.13 2.33 6.39 -52.49 -0.34 1.99 16 37 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -31.10 312.64 -6.75 -37.84 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.82 Total: 9.93 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.18 Total: -9.37 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.66 Total: -37.60 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.09 Total: -21.28 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.10 -6.75 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175984719.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.617 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds