Wall clock time and date at job start Sun Mar 29 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47486 * 2 1 4 4 H 1.09004 * 109.47420 * 305.00517 * 3 2 1 5 5 C 1.52992 * 109.47493 * 185.00266 * 3 2 1 6 6 O 1.42903 * 109.46837 * 65.00036 * 3 2 1 7 7 C 1.35714 * 116.99877 * 204.71628 * 6 3 2 8 8 C 1.39011 * 119.90737 * 354.63123 * 7 6 3 9 9 C 1.37691 * 120.09227 * 180.02562 * 8 7 6 10 10 C 1.39790 * 119.90671 * 0.27541 * 9 8 7 11 11 C 1.47492 * 120.09606 * 179.71946 * 10 9 8 12 12 O 1.21625 * 119.99795 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00503 * 180.02562 * 11 10 9 14 14 C 1.36898 * 120.00538 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00044 * 0.02562 * 14 13 11 16 16 C 1.39019 * 120.00728 * 180.02562 * 14 13 11 17 17 N 1.31376 * 120.00465 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99487 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47438 * 90.00338 * 18 16 14 20 20 H 1.48501 * 109.47054 * 209.99942 * 18 16 14 21 21 H 1.48498 * 109.47130 * 329.99908 * 18 16 14 22 22 C 1.39800 * 119.81250 * 359.44949 * 10 9 8 23 23 C 1.37689 * 119.90292 * 0.53254 * 22 10 9 24 24 H 1.09003 * 109.47241 * 299.99545 * 1 2 3 25 25 H 1.09002 * 109.47578 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46717 * 240.00413 * 2 1 3 28 28 H 1.08998 * 109.47129 * 120.00523 * 2 1 3 29 29 H 1.08998 * 109.47136 * 180.02562 * 5 3 2 30 30 H 1.09006 * 109.47255 * 299.99791 * 5 3 2 31 31 H 1.09003 * 109.47226 * 60.00033 * 5 3 2 32 32 H 1.07993 * 119.95386 * 359.97438 * 8 7 6 33 33 H 1.07997 * 120.04542 * 180.02562 * 9 8 7 34 34 H 0.97006 * 120.00139 * 0.02562 * 13 11 10 35 35 H 0.97004 * 120.00401 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.05117 * 180.24469 * 22 10 9 37 37 H 1.08005 * 119.94876 * 179.74620 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0813 1.2211 7 6 1.5581 3.4343 1.2021 8 6 1.9231 4.1415 0.0623 9 6 1.8198 5.5144 0.0390 10 6 1.3525 6.1974 1.1657 11 6 1.2460 7.6683 1.1475 12 8 1.5645 8.2888 0.1510 13 7 0.7958 8.3250 2.2349 14 6 0.6964 9.6902 2.2178 15 1 0.9785 10.2412 1.3327 16 6 0.2325 10.3676 3.3396 17 7 0.1377 11.6779 3.3234 18 14 -0.2560 9.4147 4.8703 19 1 0.9254 9.2631 5.7572 20 1 -1.3250 10.1510 5.5916 21 1 -0.7567 8.0726 4.4791 22 6 0.9811 5.4818 2.3078 23 6 1.0872 4.1091 2.3225 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9281 2.4719 -0.1253 30 1 3.9995 0.9052 0.7161 31 1 3.8531 0.9570 -1.0572 32 1 2.2890 3.6135 -0.8058 33 1 2.1031 6.0630 -0.8470 34 1 0.5421 7.8302 3.0298 35 1 -0.1864 12.1505 4.1060 36 1 0.6159 6.0053 3.1790 37 1 0.8044 3.5558 3.2059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175984738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:32 Heat of formation + Delta-G solvation = -58.015149 kcal Electronic energy + Delta-G solvation = -19193.068078 eV Core-core repulsion = 16128.471630 eV Total energy + Delta-G solvation = -3064.596448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33231 -38.74612 -36.91427 -34.32408 -34.08706 -31.89192 -30.96527 -30.08142 -29.65443 -25.28360 -24.22427 -23.10792 -22.36307 -20.86860 -19.45537 -18.83857 -18.21556 -16.54824 -15.72926 -15.37263 -15.06903 -14.85675 -14.53056 -13.87090 -13.81768 -13.74294 -13.45269 -13.21658 -13.17888 -12.77566 -12.47383 -12.27878 -12.03945 -11.89017 -11.74499 -11.36034 -11.26597 -11.06855 -10.70810 -10.65614 -10.51581 -10.03564 -9.65524 -8.86928 -8.62872 -8.27126 -7.96931 -6.42116 -3.86836 1.31006 1.55544 2.98772 3.03151 3.10903 3.11759 3.54662 4.02521 4.38779 4.41219 4.58767 4.62339 4.73986 4.91689 5.00832 5.04766 5.20535 5.25516 5.28854 5.34304 5.49529 5.55923 5.59607 5.64465 5.71103 5.79662 5.85910 5.90433 6.01946 6.19705 6.44148 6.53896 6.75606 6.86214 7.45941 7.51245 8.08078 8.51682 8.86264 9.33357 9.78546 10.70017 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.004117 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.005380 B = 6799.115987 C = 7282.361590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.075 0.925 5 C -0.182 4.182 6 O -0.309 6.309 7 C 0.130 3.870 8 C -0.215 4.215 9 C -0.034 4.034 10 C -0.134 4.134 11 C 0.481 3.519 12 O -0.582 6.582 13 N -0.573 5.573 14 C -0.300 4.300 15 H 0.123 0.877 16 C 0.043 3.957 17 N -0.870 5.870 18 Si 0.877 3.123 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.267 1.267 22 C -0.069 4.069 23 C -0.156 4.156 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.371 0.629 35 H 0.276 0.724 36 H 0.127 0.873 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -23.117 -2.664 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.093 0.907 5 C -0.239 4.239 6 O -0.223 6.223 7 C 0.085 3.915 8 C -0.234 4.234 9 C -0.054 4.054 10 C -0.138 4.138 11 C 0.270 3.730 12 O -0.467 6.467 13 N -0.210 5.210 14 C -0.429 4.429 15 H 0.141 0.859 16 C -0.162 4.162 17 N -0.509 5.509 18 Si 0.703 3.297 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.193 1.193 22 C -0.088 4.088 23 C -0.174 4.174 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.205 0.795 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.202 -22.585 -3.039 22.895 hybrid contribution -0.360 -0.473 1.132 1.279 sum 1.841 -23.059 -1.908 23.211 Atomic orbital electron populations 1.21768 0.95102 1.01750 1.02586 1.21621 0.96878 0.93989 1.03027 1.22496 0.95034 0.93851 0.86347 0.90726 1.22394 0.95298 1.03446 1.02781 1.86038 1.83812 1.16983 1.35447 1.19086 0.95770 0.82159 0.94510 1.21187 1.08696 0.95055 0.98435 1.21022 0.93905 0.92655 0.97793 1.20233 1.03888 0.94753 0.94892 1.17524 0.84957 0.85865 0.84633 1.90634 1.54688 1.68356 1.33021 1.42193 1.57525 1.07910 1.13374 1.19532 1.40781 0.79706 1.02892 0.85903 1.25100 0.97349 0.95610 0.98112 1.69603 1.44325 1.06380 1.30553 0.86700 0.79594 0.80012 0.83428 1.19213 1.19783 1.19270 1.21155 0.97041 0.93104 0.97515 1.20245 1.05760 0.93665 0.97771 0.91848 0.92740 0.92553 0.90195 0.90865 0.91466 0.91498 0.91125 0.85314 0.84630 0.79450 0.91302 0.85552 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.85 16 2 C -0.12 -0.88 5.64 -26.73 -0.15 -1.03 16 3 C 0.08 0.74 2.22 -26.74 -0.06 0.68 16 4 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 5 C -0.18 -1.51 9.16 37.15 0.34 -1.17 16 6 O -0.31 -3.82 9.33 -18.85 -0.18 -3.99 16 7 C 0.13 1.84 6.61 -39.01 -0.26 1.58 16 8 C -0.22 -3.04 8.20 -39.49 -0.32 -3.36 16 9 C -0.03 -0.59 9.59 -39.20 -0.38 -0.96 16 10 C -0.13 -2.61 5.88 -104.96 -0.62 -3.22 16 11 C 0.48 11.76 7.71 -12.49 -0.10 11.66 16 12 O -0.58 -16.34 15.91 5.26 0.08 -16.25 16 13 N -0.57 -14.19 5.03 -11.94 -0.06 -14.25 16 14 C -0.30 -8.57 10.16 -15.00 -0.15 -8.72 16 15 H 0.12 3.97 7.38 -52.48 -0.39 3.58 16 16 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16 17 N -0.87 -25.10 13.95 55.50 0.77 -24.32 16 18 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 22 C -0.07 -1.14 9.53 -39.20 -0.37 -1.52 16 23 C -0.16 -2.27 9.97 -39.50 -0.39 -2.66 16 24 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.63 6.88 -51.93 -0.36 0.28 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.13 1.47 5.39 -52.49 -0.28 1.19 16 33 H 0.14 2.35 7.64 -52.49 -0.40 1.95 16 34 H 0.37 8.09 3.78 -40.82 -0.15 7.93 16 35 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 1.96 6.40 -52.48 -0.34 1.63 16 37 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -32.08 309.50 -6.40 -38.48 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.78 Total: 9.69 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.19 Total: -8.51 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.71 Total: -38.57 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.09 Total: -20.25 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.08 -6.40 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175984738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.536 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds