Wall clock time and date at job start Sun Mar 29 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47486 * 2 1 4 4 H 1.09004 * 109.47420 * 305.00517 * 3 2 1 5 5 C 1.52992 * 109.47493 * 185.00266 * 3 2 1 6 6 O 1.42903 * 109.46837 * 65.00036 * 3 2 1 7 7 C 1.35714 * 116.99877 * 204.71628 * 6 3 2 8 8 C 1.39011 * 119.90737 * 354.63123 * 7 6 3 9 9 C 1.37691 * 120.09227 * 180.02562 * 8 7 6 10 10 C 1.39790 * 119.90671 * 0.27541 * 9 8 7 11 11 C 1.47492 * 120.09606 * 179.71946 * 10 9 8 12 12 O 1.21625 * 119.99795 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00503 * 180.02562 * 11 10 9 14 14 C 1.36898 * 120.00538 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00044 * 0.02562 * 14 13 11 16 16 C 1.39019 * 120.00728 * 180.02562 * 14 13 11 17 17 N 1.31376 * 120.00465 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99487 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47438 * 90.00338 * 18 16 14 20 20 H 1.48501 * 109.47054 * 209.99942 * 18 16 14 21 21 H 1.48498 * 109.47130 * 329.99908 * 18 16 14 22 22 C 1.39800 * 119.81250 * 359.44949 * 10 9 8 23 23 C 1.37689 * 119.90292 * 0.53254 * 22 10 9 24 24 H 1.09003 * 109.47241 * 299.99545 * 1 2 3 25 25 H 1.09002 * 109.47578 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46717 * 240.00413 * 2 1 3 28 28 H 1.08998 * 109.47129 * 120.00523 * 2 1 3 29 29 H 1.08998 * 109.47136 * 180.02562 * 5 3 2 30 30 H 1.09006 * 109.47255 * 299.99791 * 5 3 2 31 31 H 1.09003 * 109.47226 * 60.00033 * 5 3 2 32 32 H 1.07993 * 119.95386 * 359.97438 * 8 7 6 33 33 H 1.07997 * 120.04542 * 180.02562 * 9 8 7 34 34 H 0.97006 * 120.00139 * 0.02562 * 13 11 10 35 35 H 0.97004 * 120.00401 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.05117 * 180.24469 * 22 10 9 37 37 H 1.08005 * 119.94876 * 179.74620 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0813 1.2211 7 6 1.5581 3.4343 1.2021 8 6 1.9231 4.1415 0.0623 9 6 1.8198 5.5144 0.0390 10 6 1.3525 6.1974 1.1657 11 6 1.2460 7.6683 1.1475 12 8 1.5645 8.2888 0.1510 13 7 0.7958 8.3250 2.2349 14 6 0.6964 9.6902 2.2178 15 1 0.9785 10.2412 1.3327 16 6 0.2325 10.3676 3.3396 17 7 0.1377 11.6779 3.3234 18 14 -0.2560 9.4147 4.8703 19 1 0.9254 9.2631 5.7572 20 1 -1.3250 10.1510 5.5916 21 1 -0.7567 8.0726 4.4791 22 6 0.9811 5.4818 2.3078 23 6 1.0872 4.1091 2.3225 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9281 2.4719 -0.1253 30 1 3.9995 0.9052 0.7161 31 1 3.8531 0.9570 -1.0572 32 1 2.2890 3.6135 -0.8058 33 1 2.1031 6.0630 -0.8470 34 1 0.5421 7.8302 3.0298 35 1 -0.1864 12.1505 4.1060 36 1 0.6159 6.0053 3.1790 37 1 0.8044 3.5558 3.2059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175984738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:31 Heat of formation + Delta-G solvation = -79.186037 kcal Electronic energy + Delta-G solvation = -19193.986117 eV Core-core repulsion = 16128.471630 eV Total energy + Delta-G solvation = -3065.514487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48545 -40.38418 -38.27641 -36.17495 -35.09603 -33.91885 -32.14264 -31.14296 -30.71722 -27.17201 -25.10807 -24.10931 -23.76737 -21.91274 -21.13596 -20.63390 -19.33734 -18.16829 -17.12503 -16.77642 -16.26851 -16.02254 -15.79242 -15.61037 -15.10681 -14.83014 -14.71085 -14.47679 -14.31655 -14.23462 -13.87595 -13.39818 -13.22156 -13.03502 -12.77126 -12.60307 -12.49082 -12.03092 -11.96768 -11.93819 -11.64365 -11.54102 -11.43472 -10.64301 -10.35055 -10.09069 -9.22729 -8.49677 -6.07755 -0.03812 0.32717 1.26373 1.33581 1.40825 1.96983 2.17117 2.18447 2.78633 2.82556 3.22108 3.70074 3.80333 3.83992 3.98278 4.04525 4.10361 4.23554 4.33569 4.45708 4.53814 4.65721 4.70771 4.79678 4.96982 5.01410 5.10172 5.12899 5.22060 5.25889 5.28770 5.37560 5.43739 5.53117 5.65749 5.87729 6.42978 6.49686 6.76738 7.27590 7.83457 8.67252 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.004117 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.005380 B = 6799.115987 C = 7282.361590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C 0.068 3.932 4 H 0.079 0.921 5 C -0.180 4.180 6 O -0.309 6.309 7 C 0.150 3.850 8 C -0.207 4.207 9 C -0.039 4.039 10 C -0.170 4.170 11 C 0.484 3.516 12 O -0.631 6.631 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.060 0.940 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.957 3.043 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.233 1.233 22 C -0.060 4.060 23 C -0.154 4.154 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.389 0.611 35 H 0.283 0.717 36 H 0.139 0.861 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -27.766 -1.155 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.012 3.988 4 H 0.097 0.903 5 C -0.238 4.238 6 O -0.223 6.223 7 C 0.103 3.897 8 C -0.225 4.225 9 C -0.058 4.058 10 C -0.173 4.173 11 C 0.275 3.725 12 O -0.519 6.519 13 N -0.212 5.212 14 C -0.463 4.463 15 H 0.078 0.922 16 C -0.209 4.209 17 N -0.561 5.561 18 Si 0.775 3.225 19 H -0.175 1.175 20 H -0.190 1.190 21 H -0.156 1.156 22 C -0.079 4.079 23 C -0.172 4.172 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.142 0.858 34 H 0.226 0.774 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.966 -27.274 -1.538 27.388 hybrid contribution -0.203 0.754 0.475 0.913 sum 1.763 -26.521 -1.064 26.601 Atomic orbital electron populations 1.21785 0.95512 1.02391 1.01710 1.21658 0.96451 0.92697 1.04291 1.22867 0.95974 0.94754 0.85163 0.90313 1.22396 0.94234 1.02978 1.04151 1.86075 1.83208 1.15671 1.37326 1.19242 0.93355 0.83162 0.93962 1.21358 1.07876 0.93571 0.99709 1.21030 0.93939 0.94013 0.96838 1.19875 1.08427 0.91468 0.97576 1.18455 0.82492 0.88118 0.83478 1.90589 1.56198 1.70266 1.34838 1.41930 1.58505 1.06434 1.14367 1.19086 1.43738 0.81537 1.01959 0.92196 1.26140 0.96128 0.96667 1.01941 1.69764 1.45357 1.08730 1.32289 0.85490 0.79827 0.79715 0.77423 1.17515 1.19045 1.15618 1.21242 0.96068 0.94018 0.96581 1.20518 1.04931 0.92792 0.98978 0.93517 0.92786 0.91275 0.87826 0.90702 0.92710 0.91397 0.88801 0.82483 0.85829 0.77422 0.90677 0.84330 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.81 71.98 0.71 -1.25 16 2 C -0.11 -1.25 5.64 30.59 0.17 -1.07 16 3 C 0.07 1.01 2.22 30.59 0.07 1.07 16 4 H 0.08 1.14 6.31 -2.39 -0.02 1.12 16 5 C -0.18 -2.31 9.16 71.98 0.66 -1.65 16 6 O -0.31 -6.42 9.33 -90.36 -0.84 -7.26 16 7 C 0.15 3.68 6.61 22.64 0.15 3.83 16 8 C -0.21 -5.31 8.20 22.33 0.18 -5.13 16 9 C -0.04 -1.31 9.59 22.52 0.22 -1.10 16 10 C -0.17 -6.58 5.88 -20.08 -0.12 -6.70 16 11 C 0.48 24.61 7.71 86.68 0.67 25.28 16 12 O -0.63 -37.88 15.91 -4.11 -0.07 -37.95 16 13 N -0.57 -29.17 5.03 -309.93 -1.56 -30.73 16 14 C -0.33 -20.25 10.16 84.09 0.85 -19.39 16 15 H 0.06 4.27 7.38 -2.91 -0.02 4.25 16 16 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 17 N -0.92 -55.59 13.95 21.68 0.30 -55.29 16 18 Si 0.96 38.91 27.74 68.60 1.90 40.81 16 19 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 22 C -0.06 -1.85 9.53 22.52 0.21 -1.63 16 23 C -0.15 -3.88 9.97 22.32 0.22 -3.66 16 24 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.85 6.88 -2.39 -0.02 0.84 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.16 3.09 5.39 -2.91 -0.02 3.07 16 33 H 0.12 4.42 7.64 -2.91 -0.02 4.40 16 34 H 0.39 16.55 3.78 -92.70 -0.35 16.19 16 35 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.14 3.85 6.40 -2.91 -0.02 3.83 16 37 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -76.21 309.50 4.87 -71.33 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.67 Total: 30.50 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 4.46 Total: -11.42 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.26 Total: -86.02 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.91 Total: -45.21 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Total: -76.21 4.87 -71.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175984738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.855 kcal (2) G-P(sol) polarization free energy of solvation -76.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds