Wall clock time and date at job start Mon Mar 30 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46528 * 2 1 4 4 C 1.50699 * 109.47249 * 240.00047 * 2 1 3 5 5 C 1.38229 * 120.00038 * 311.66873 * 4 2 1 6 6 C 1.38236 * 119.99934 * 179.79208 * 5 4 2 7 7 C 1.38232 * 120.00046 * 0.43162 * 6 5 4 8 8 C 1.38237 * 120.00036 * 359.81616 * 7 6 5 9 9 C 1.38237 * 119.99770 * 131.93286 * 4 2 1 10 10 C 1.52997 * 109.46771 * 119.99974 * 2 1 3 11 11 C 1.52998 * 109.47171 * 299.21271 * 10 2 1 12 12 O 1.42897 * 109.47145 * 59.21767 * 10 2 1 13 13 C 1.50704 * 109.46702 * 179.21630 * 10 2 1 14 14 O 1.21294 * 120.00385 * 25.28988 * 13 10 2 15 15 N 1.34781 * 119.99729 * 205.29450 * 13 10 2 16 16 C 1.37099 * 119.99833 * 179.97438 * 15 13 10 17 17 H 1.07999 * 119.99758 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99667 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00324 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99757 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47224 * 59.99867 * 20 18 16 22 22 H 1.48500 * 109.47028 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47307 * 299.99959 * 20 18 16 24 24 H 1.09004 * 109.47131 * 61.11760 * 1 2 3 25 25 H 1.09000 * 109.47480 * 301.11656 * 1 2 3 26 26 H 1.08996 * 109.46948 * 181.11544 * 1 2 3 27 27 H 1.08007 * 120.00260 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.00423 * 180.27127 * 6 5 4 29 29 H 1.08000 * 120.00596 * 179.83823 * 7 6 5 30 30 H 1.07999 * 120.00282 * 179.97438 * 8 7 6 31 31 H 1.08001 * 120.00139 * 359.97438 * 9 4 2 32 32 H 1.08993 * 109.47548 * 66.48639 * 11 10 2 33 33 H 1.09007 * 109.46766 * 186.48523 * 11 10 2 34 34 H 1.09000 * 109.47389 * 306.48167 * 11 10 2 35 35 H 0.96699 * 114.00350 * 68.81773 * 12 10 2 36 36 H 0.96995 * 119.99838 * 359.97438 * 15 13 10 37 37 H 0.97004 * 120.00121 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.5125 -1.9433 -1.5774 6 6 1.9702 -2.5929 -2.7085 7 6 2.9543 -2.0138 -3.4876 8 6 3.4779 -0.7831 -3.1378 9 6 3.0171 -0.1315 -2.0091 10 6 2.0399 -0.7212 1.2492 11 6 1.5462 0.0114 2.4984 12 8 1.5486 -2.0631 1.2585 13 6 3.5469 -0.7381 1.2395 14 8 4.1591 0.1158 0.6336 15 7 4.2143 -1.7021 1.9042 16 6 5.5851 -1.7178 1.8950 17 1 6.1302 -0.9579 1.3548 18 6 6.2731 -2.7113 2.5806 19 7 5.6099 -3.6357 3.2383 20 14 8.1410 -2.7331 2.5674 21 1 8.6549 -1.4699 3.1552 22 1 8.6283 -3.8851 3.3679 23 1 8.6247 -2.8613 1.1694 24 1 -0.3633 0.4964 -0.8999 25 1 -0.3634 0.5311 0.8798 26 1 -0.3633 -1.0274 0.0200 27 1 0.7465 -2.3977 -0.9665 28 1 1.5609 -3.5542 -2.9821 29 1 3.3138 -2.5224 -4.3699 30 1 4.2470 -0.3308 -3.7463 31 1 3.4260 0.8300 -1.7359 32 1 0.4618 -0.0755 2.5658 33 1 2.0019 -0.4322 3.3837 34 1 1.8231 1.0637 2.4357 35 1 1.9289 -2.6260 0.5703 36 1 3.7247 -2.3848 2.3890 37 1 6.0903 -4.3291 3.7173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176166645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:11 Heat of formation + Delta-G solvation = -71.253115 kcal Electronic energy + Delta-G solvation = -20651.140861 eV Core-core repulsion = 17585.970372 eV Total energy + Delta-G solvation = -3065.170490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03722 -38.15623 -36.28045 -34.17640 -33.23468 -31.15538 -30.62741 -30.41299 -28.30515 -25.43269 -24.47929 -22.26132 -21.93908 -20.28705 -19.06215 -18.01790 -16.88670 -16.51839 -15.55169 -15.07054 -14.84113 -14.36402 -14.13062 -13.81274 -13.47878 -13.29101 -12.85020 -12.47710 -12.36510 -12.10978 -12.04136 -11.86837 -11.59260 -11.41014 -11.30939 -11.06676 -11.01123 -10.65381 -10.45897 -10.40041 -10.22611 -9.76155 -9.48416 -8.52694 -8.41176 -8.06287 -7.95007 -6.42033 -3.82959 1.70719 1.80131 3.17972 3.24518 3.28626 3.84469 4.13755 4.14218 4.54978 4.88831 4.99122 5.16849 5.24694 5.30139 5.32313 5.45584 5.65152 5.74018 5.81547 5.83732 5.92134 5.99992 6.04638 6.18384 6.25968 6.34390 6.40179 6.41896 6.54344 6.58031 6.81622 6.88631 7.08612 7.38925 7.53591 7.87289 8.08730 8.61364 9.16076 9.54730 10.05160 10.74599 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.007364 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.063146 B = 3801.319458 C = 4530.706630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 H 0.091 0.909 4 C -0.069 4.069 5 C -0.130 4.130 6 C -0.126 4.126 7 C -0.128 4.128 8 C -0.124 4.124 9 C -0.081 4.081 10 C 0.133 3.867 11 C -0.133 4.133 12 O -0.556 6.556 13 C 0.414 3.586 14 O -0.588 6.588 15 N -0.549 5.549 16 C -0.302 4.302 17 H 0.102 0.898 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.929 3.071 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.376 0.624 36 H 0.397 0.603 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 2.897 -7.429 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 H 0.109 0.891 4 C -0.069 4.069 5 C -0.148 4.148 6 C -0.144 4.144 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.099 4.099 10 C 0.089 3.911 11 C -0.191 4.191 12 O -0.364 6.364 13 C 0.199 3.801 14 O -0.474 6.474 15 N -0.184 5.184 16 C -0.432 4.432 17 H 0.120 0.880 18 C -0.178 4.178 19 N -0.536 5.536 20 Si 0.756 3.244 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.226 0.774 36 H 0.231 0.769 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.096 3.507 -7.199 12.119 hybrid contribution 1.197 -0.783 -0.129 1.436 sum -7.899 2.724 -7.328 11.114 Atomic orbital electron populations 1.21824 0.94138 1.02474 1.01236 1.20547 0.95640 1.00147 0.91602 0.89099 1.19753 0.96505 0.94849 0.95806 1.21136 1.00948 0.95240 0.97427 1.21033 0.98008 0.99675 0.95673 1.21051 0.97654 0.95924 0.99977 1.21116 0.99840 0.95660 0.97565 1.21117 0.94931 1.00521 0.93355 1.21315 0.91513 0.83183 0.95127 1.21725 1.01534 0.99785 0.96017 1.86453 1.69525 1.21420 1.58985 1.20402 0.88949 0.85468 0.85273 1.90490 1.69066 1.40119 1.47711 1.41891 1.07069 1.25303 1.44181 1.19664 0.81336 1.11901 1.30252 0.88047 1.25285 1.00632 0.95511 0.96338 1.69624 1.36631 1.14797 1.32526 0.85945 0.82266 0.77755 0.78420 1.19885 1.20890 1.19907 0.92947 0.92306 0.91809 0.85657 0.86557 0.86775 0.86606 0.85747 0.91432 0.91548 0.91021 0.77410 0.76864 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.34 37.16 0.31 -1.52 16 2 C -0.06 -0.98 1.69 -91.77 -0.16 -1.13 16 3 H 0.09 1.55 7.68 -51.93 -0.40 1.15 16 4 C -0.07 -1.17 3.95 -104.63 -0.41 -1.58 16 5 C -0.13 -1.97 7.29 -39.59 -0.29 -2.26 16 6 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 7 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 8 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 9 C -0.08 -1.43 8.44 -39.58 -0.33 -1.76 16 10 C 0.13 2.44 0.75 -91.77 -0.07 2.37 16 11 C -0.13 -2.18 8.30 37.16 0.31 -1.87 16 12 O -0.56 -9.93 10.80 -35.23 -0.38 -10.31 16 13 C 0.41 9.73 5.96 -10.98 -0.07 9.66 16 14 O -0.59 -15.26 14.00 5.55 0.08 -15.19 16 15 N -0.55 -14.13 5.20 -10.96 -0.06 -14.19 16 16 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 20 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.70 6.66 -51.93 -0.35 0.35 16 26 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 27 H 0.13 1.72 5.79 -52.48 -0.30 1.41 16 28 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.12 2.26 7.71 -52.49 -0.40 1.85 16 32 H 0.07 0.94 6.83 -51.93 -0.35 0.58 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.38 6.60 6.38 45.56 0.29 6.89 16 36 H 0.40 10.16 7.33 -40.82 -0.30 9.86 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -30.23 302.77 -6.43 -36.66 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -4.19 Total: 19.17 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.14 Total: -12.97 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.67 Total: -38.11 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.30 Total: -25.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.23 -6.43 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176166645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.594 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds