Wall clock time and date at job start Sun Mar 29 2020 23:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47004 * 2 1 4 4 H 1.08999 * 109.47436 * 54.35030 * 3 2 1 5 5 C 1.50702 * 109.46991 * 174.34615 * 3 2 1 6 6 O 1.21297 * 120.00167 * 96.89221 * 5 3 2 7 7 N 1.34777 * 120.00120 * 276.89577 * 5 3 2 8 8 C 1.37097 * 120.00333 * 174.08059 * 7 5 3 9 9 H 1.08008 * 119.99484 * 359.97438 * 8 7 5 10 10 C 1.38951 * 120.00624 * 179.97438 * 8 7 5 11 11 N 1.31416 * 119.99374 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00110 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47049 * 60.00494 * 12 10 8 14 14 H 1.48504 * 109.46783 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47384 * 300.00018 * 12 10 8 16 16 C 1.50693 * 109.47437 * 294.34609 * 3 2 1 17 17 C 1.38264 * 119.94373 * 119.99922 * 16 3 2 18 18 C 1.38148 * 120.05590 * 180.02562 * 17 16 3 19 19 C 1.38738 * 119.94080 * 359.97438 * 18 17 16 20 20 O 1.35903 * 120.04958 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99363 * 180.02562 * 20 19 18 22 22 C 1.38730 * 119.88910 * 0.02562 * 19 18 17 23 23 C 1.38141 * 119.94724 * 359.97438 * 22 19 18 24 24 H 1.09002 * 109.46909 * 65.66435 * 1 2 3 25 25 H 1.09003 * 109.47178 * 185.66075 * 1 2 3 26 26 H 1.08996 * 109.47651 * 305.66506 * 1 2 3 27 27 H 1.08994 * 109.47039 * 239.99778 * 2 1 3 28 28 H 1.09005 * 109.46957 * 120.00141 * 2 1 3 29 29 H 0.96999 * 119.99839 * 354.08456 * 7 5 3 30 30 H 0.96996 * 119.99608 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.97421 * 0.27947 * 17 16 3 32 32 H 1.08000 * 120.03087 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.46986 * 180.02562 * 21 20 19 34 34 H 1.09005 * 109.47361 * 300.00252 * 21 20 19 35 35 H 1.09002 * 109.47037 * 60.00479 * 21 20 19 36 36 H 1.08003 * 120.02422 * 179.97438 * 22 19 18 37 37 H 1.07996 * 119.97305 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9847 0.8350 5 6 3.5404 1.4448 0.1400 6 8 4.2414 1.5374 -0.8456 7 7 4.1036 1.3438 1.3603 8 6 5.4641 1.2236 1.4797 9 1 6.0845 1.2095 0.5957 10 6 6.0448 1.1200 2.7378 11 7 5.2897 1.1368 3.8132 12 14 7.8985 0.9570 2.9003 13 1 8.5545 2.1460 2.2993 14 1 8.2630 0.8633 4.3368 15 1 8.3515 -0.2683 2.1941 16 6 1.6552 2.1114 -1.2944 17 6 0.8536 3.2378 -1.2775 18 6 0.4991 3.8525 -2.4628 19 6 0.9485 3.3389 -3.6707 20 8 0.6006 3.9416 -4.8380 21 6 1.0993 3.3576 -6.0432 22 6 1.7527 2.2086 -3.6849 23 6 2.1044 1.5975 -2.4969 24 1 -0.3633 0.4235 -0.9364 25 1 -0.3634 -1.0227 0.1014 26 1 -0.3634 0.5991 0.8349 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.5463 1.3561 2.1541 30 1 5.6950 1.0641 4.6914 31 1 0.5077 3.6398 -0.3367 32 1 -0.1268 4.7326 -2.4491 33 1 0.7485 3.9348 -6.8988 34 1 2.1891 3.3614 -6.0250 35 1 0.7408 2.3315 -6.1252 36 1 2.1035 1.8066 -4.6239 37 1 2.7301 0.7173 -2.5075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180148872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:05 Heat of formation + Delta-G solvation = -64.404387 kcal Electronic energy + Delta-G solvation = -19581.462871 eV Core-core repulsion = 16516.589364 eV Total energy + Delta-G solvation = -3064.873506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06516 -38.72799 -37.00697 -34.27566 -33.83092 -31.18051 -30.73326 -29.94615 -27.71630 -26.47044 -24.47551 -22.74145 -21.75419 -20.83367 -18.93917 -17.96988 -17.81527 -16.37984 -15.68594 -15.56447 -15.25532 -14.52786 -14.37113 -14.05927 -13.82375 -13.43932 -13.28360 -13.11574 -12.88275 -12.38864 -11.99662 -11.92872 -11.59666 -11.45845 -11.29537 -11.08007 -10.89805 -10.72151 -10.44649 -10.38796 -10.32465 -10.18879 -9.48588 -8.70841 -8.28428 -7.95943 -7.75351 -6.41065 -3.81825 1.66782 1.77065 3.19907 3.25846 3.30272 3.38210 3.87829 4.06379 4.21668 4.90031 4.99562 5.10997 5.12580 5.13583 5.24420 5.29601 5.41300 5.46567 5.51223 5.67164 5.70425 5.79099 5.84662 6.02401 6.15310 6.21064 6.34076 6.40917 6.42117 6.55249 6.62041 6.73662 7.04285 7.09341 7.55215 7.58423 8.06174 8.61794 9.17974 9.55533 10.06395 10.76432 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.004682 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.924016 B = 5978.999549 C = 6536.766310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.059 4.059 4 H 0.084 0.916 5 C 0.447 3.553 6 O -0.589 6.589 7 N -0.560 5.560 8 C -0.301 4.301 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.901 5.901 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.085 4.085 17 C -0.079 4.079 18 C -0.159 4.159 19 C 0.113 3.887 20 O -0.323 6.323 21 C 0.029 3.971 22 C -0.212 4.212 23 C -0.035 4.035 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.393 0.607 30 H 0.272 0.728 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.122 0.878 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 0.905 -10.476 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.081 4.081 4 H 0.102 0.898 5 C 0.233 3.767 6 O -0.474 6.474 7 N -0.195 5.195 8 C -0.430 4.430 9 H 0.120 0.880 10 C -0.178 4.178 11 N -0.542 5.542 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.085 4.085 17 C -0.097 4.097 18 C -0.178 4.178 19 C 0.069 3.931 20 O -0.237 6.237 21 C -0.066 4.066 22 C -0.231 4.231 23 C -0.053 4.053 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.665 1.102 -10.947 15.323 hybrid contribution 0.875 -0.203 0.555 1.056 sum -9.790 0.899 -10.392 14.305 Atomic orbital electron populations 1.21771 0.95702 1.01172 1.01824 1.21460 0.95602 0.94630 1.02857 1.20165 0.95420 0.96965 0.95515 0.89758 1.19727 0.88563 0.84127 0.84280 1.90509 1.63495 1.55645 1.37702 1.41870 1.07990 1.63425 1.06232 1.19664 0.82392 1.47046 0.93905 0.88048 1.25250 1.00410 0.97328 0.94838 1.69605 1.36099 1.50273 0.98229 0.85938 0.82320 0.79064 0.77017 1.19918 1.20952 1.19928 1.19365 0.98530 0.96289 0.94353 1.20836 0.97078 0.94636 0.97197 1.20238 1.05326 1.02471 0.89719 1.18983 0.95787 0.92607 0.85732 1.86015 1.71172 1.53572 1.12968 1.22986 0.99501 0.99001 0.85127 1.21178 1.04063 0.98475 0.99389 1.20838 0.94656 0.99116 0.90707 0.92730 0.92997 0.92713 0.91598 0.91139 0.77385 0.91811 0.85676 0.85772 0.88704 0.92720 0.92866 0.86018 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.64 37.16 0.36 -1.51 16 2 C -0.11 -1.69 5.28 -26.73 -0.14 -1.83 16 3 C -0.06 -1.06 2.36 -92.93 -0.22 -1.28 16 4 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 5 C 0.45 10.53 6.88 -10.98 -0.08 10.46 16 6 O -0.59 -15.74 14.16 5.54 0.08 -15.66 16 7 N -0.56 -14.19 5.28 -10.96 -0.06 -14.25 16 8 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 9 H 0.10 2.96 7.17 -52.48 -0.38 2.58 16 10 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 11 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 12 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C -0.08 -1.47 3.74 -104.60 -0.39 -1.86 16 17 C -0.08 -1.22 9.66 -39.61 -0.38 -1.60 16 18 C -0.16 -2.36 9.99 -39.43 -0.39 -2.76 16 19 C 0.11 1.73 6.69 -39.21 -0.26 1.47 16 20 O -0.32 -4.44 10.50 -19.44 -0.20 -4.65 16 21 C 0.03 0.28 9.81 101.05 0.99 1.27 16 22 C -0.21 -3.29 9.04 -39.43 -0.36 -3.65 16 23 C -0.04 -0.61 7.80 -39.60 -0.31 -0.92 16 24 H 0.05 0.69 7.59 -51.93 -0.39 0.30 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.06 7.20 -51.93 -0.37 0.68 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.13 1.65 7.94 -52.49 -0.42 1.23 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 36 H 0.12 1.60 6.30 -52.48 -0.33 1.27 16 37 H 0.13 2.37 6.90 -52.49 -0.36 2.00 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -31.28 313.07 -6.22 -37.50 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.03 Total: 10.23 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.42 Total: -10.19 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.67 Total: -38.01 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.13 Total: -20.31 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.28 -6.22 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180148872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.907 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds