Wall clock time and date at job start Sun Mar 29 2020 23:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21768 * 119.99869 * 359.97438 * 14 13 3 16 16 C 1.41553 * 119.99798 * 180.02562 * 14 13 3 17 17 C 1.35623 * 119.99822 * 180.02562 * 16 14 13 18 18 C 1.41607 * 120.00188 * 179.97438 * 17 16 14 19 19 C 1.37954 * 126.10614 * 179.71151 * 18 17 16 20 20 C 1.40318 * 106.52540 * 179.85273 * 19 18 17 21 21 C 1.35155 * 107.20685 * 0.41266 * 20 19 18 22 22 C 1.50700 * 125.47889 * 179.71705 * 21 20 19 23 23 O 1.34016 * 109.03277 * 359.74324 * 21 20 19 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 31 31 H 1.08003 * 120.00158 * 359.97438 * 16 14 13 32 32 H 1.08003 * 120.00020 * 359.97438 * 17 16 14 33 33 H 1.07998 * 126.73358 * 0.02562 * 19 18 17 34 34 H 1.08004 * 126.39121 * 180.13067 * 20 19 18 35 35 H 1.09001 * 109.46898 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47616 * 300.00405 * 22 21 20 37 37 H 1.09006 * 109.46805 * 60.00763 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3423 2.6325 0.4303 16 6 0.0610 3.2977 2.5763 17 6 -1.1641 3.8677 2.6924 18 6 -1.5388 4.5008 3.9024 19 6 -2.7441 5.1224 4.1554 20 6 -2.6774 5.6016 5.4725 21 6 -1.4600 5.2702 5.9573 22 6 -0.9512 5.5930 7.3386 23 8 -0.7782 4.6091 5.0118 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 0.7507 3.3262 3.4069 32 1 -1.8541 3.8388 1.8620 33 1 -3.5768 5.2185 3.4743 34 1 -3.4522 6.1392 5.9988 35 1 0.0607 5.2041 7.4530 36 1 -0.9437 6.6737 7.4798 37 1 -1.6027 5.1338 8.0822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183808601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:22 Heat of formation + Delta-G solvation = -18.116580 kcal Electronic energy + Delta-G solvation = -19044.650512 eV Core-core repulsion = 15981.784196 eV Total energy + Delta-G solvation = -3062.866317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.65495 -39.18260 -35.30533 -33.99523 -33.37336 -32.36626 -31.41822 -30.67882 -27.53681 -26.41333 -23.51089 -22.48278 -21.95708 -20.54414 -19.53696 -19.14906 -17.21206 -16.72605 -16.36514 -15.64581 -15.29911 -14.61080 -14.44009 -14.32431 -13.53868 -13.33836 -13.28466 -13.08057 -12.72153 -12.55799 -12.16980 -12.03172 -11.88206 -11.50769 -11.22351 -10.96967 -10.81474 -10.48338 -10.30045 -10.14334 -9.85821 -9.60076 -9.09928 -9.00319 -8.48025 -7.95137 -7.67037 -6.10405 -4.19681 0.58610 2.05088 2.74815 2.76179 3.25560 3.32465 3.34819 4.07774 4.19994 4.41632 4.55655 4.79014 4.92755 5.06349 5.14546 5.20974 5.27232 5.40587 5.59234 5.67047 5.73025 6.04345 6.15929 6.36342 6.42615 6.45987 6.50045 6.69894 7.02754 7.08155 7.23844 7.40199 7.48607 7.64907 7.76982 7.93244 8.20595 8.69712 8.79902 9.15997 9.47624 10.94974 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031191 B = 0.003755 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.486225 B = 7455.873401 C = 8056.865197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.528 3.472 15 O -0.554 6.554 16 C -0.178 4.178 17 C -0.023 4.023 18 C 0.007 3.993 19 C -0.175 4.175 20 C -0.215 4.215 21 C -0.006 4.006 22 C -0.076 4.076 23 O -0.165 6.165 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 8.348 16.132 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.317 3.683 15 O -0.436 6.436 16 C -0.199 4.199 17 C -0.043 4.043 18 C -0.042 4.042 19 C -0.194 4.194 20 C -0.234 4.234 21 C -0.058 4.058 22 C -0.132 4.132 23 O -0.061 6.061 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.141 0.859 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.038 8.084 15.275 19.503 hybrid contribution 1.155 0.007 0.258 1.183 sum -7.884 8.091 15.533 19.206 Atomic orbital electron populations 1.21842 0.98330 0.97996 1.01288 1.21928 0.92653 0.99747 1.02256 1.18802 0.94196 0.89245 0.81115 0.93167 1.21248 0.90764 1.38976 1.06290 0.92100 1.24891 0.98599 0.94832 0.95379 1.69899 1.35092 1.37649 1.09330 0.86456 0.84909 0.78426 0.77359 1.20562 1.21077 1.19874 1.46488 1.14536 1.55164 1.18519 1.16912 0.83269 0.80240 0.87910 1.90798 1.51387 1.60606 1.40815 1.22432 0.97672 1.00648 0.99113 1.20612 0.97333 0.93917 0.92414 1.19953 0.91275 1.05418 0.87555 1.22277 0.98019 1.01889 0.97263 1.21457 0.98193 1.07535 0.96227 1.22652 0.92248 0.98764 0.92130 1.20349 1.02548 1.02670 0.87673 1.84055 1.41843 1.59500 1.20688 0.93116 0.94243 0.95896 0.95072 0.88286 0.92581 0.77858 0.85861 0.82254 0.82770 0.83254 0.90420 0.89569 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.14 5.45 -26.74 -0.15 -3.28 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.88 11.30 55.43 0.63 -24.25 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -14.90 5.01 -57.85 -0.29 -15.19 16 14 C 0.53 10.77 6.12 -15.00 -0.09 10.68 16 15 O -0.55 -12.98 13.24 5.13 0.07 -12.91 16 16 C -0.18 -2.88 9.41 -39.25 -0.37 -3.25 16 17 C -0.02 -0.33 9.39 -39.23 -0.37 -0.70 16 18 C 0.01 0.10 6.84 -38.40 -0.26 -0.17 16 19 C -0.18 -2.01 10.90 -38.90 -0.42 -2.44 16 20 C -0.22 -2.18 10.76 -39.90 -0.43 -2.61 16 21 C -0.01 -0.07 7.30 -35.41 -0.26 -0.33 16 22 C -0.08 -0.49 10.41 36.01 0.37 -0.11 16 23 O -0.16 -2.19 10.18 4.70 0.05 -2.14 16 24 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 25 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.39 7.24 8.50 -40.82 -0.35 6.90 16 31 H 0.12 1.76 7.72 -52.48 -0.41 1.35 16 32 H 0.16 2.31 7.46 -52.48 -0.39 1.92 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -31.08 315.50 -7.07 -38.15 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.05 Total: 7.07 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.21 Total: -11.20 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.34 Total: -39.45 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.12 Total: -15.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.08 -7.07 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183808601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.035 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds