Wall clock time and date at job start Sun Mar 29 2020 23:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47131 * 2 1 4 4 C 1.53005 * 109.46867 * 120.00133 * 2 1 3 5 5 O 1.42903 * 109.47038 * 239.99961 * 2 1 3 6 6 C 1.35928 * 116.99915 * 64.66349 * 5 2 1 7 7 C 1.38538 * 120.09748 * 354.63916 * 6 5 2 8 8 C 1.38246 * 120.02613 * 179.97438 * 7 6 5 9 9 C 1.38393 * 120.22306 * 0.02562 * 8 7 6 10 10 C 1.38094 * 120.19370 * 359.97438 * 9 8 7 11 11 C 1.38937 * 119.97106 * 359.74932 * 10 9 8 12 12 N 1.39568 * 120.10988 * 180.25057 * 11 10 9 13 13 C 1.34778 * 120.00105 * 34.95459 * 12 11 10 14 14 O 1.21770 * 120.00095 * 5.02645 * 13 12 11 15 15 C 1.41815 * 119.99829 * 185.03093 * 13 12 11 16 16 H 1.07998 * 120.00252 * 359.97438 * 15 13 12 17 17 C 1.40137 * 119.99646 * 179.97438 * 15 13 12 18 18 N 1.30628 * 120.00024 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99664 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46948 * 60.00167 * 19 17 15 21 21 H 1.48502 * 109.47083 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47229 * 299.99903 * 19 17 15 23 23 H 1.09003 * 109.47057 * 55.06484 * 1 2 3 24 24 H 1.09006 * 109.46923 * 175.06134 * 1 2 3 25 25 H 1.09001 * 109.47131 * 295.06299 * 1 2 3 26 26 H 1.08995 * 109.46815 * 64.94743 * 3 2 1 27 27 H 1.09002 * 109.47050 * 184.94886 * 3 2 1 28 28 H 1.09004 * 109.47053 * 304.95112 * 3 2 1 29 29 H 1.08991 * 109.47246 * 60.00398 * 4 2 1 30 30 H 1.08999 * 109.46541 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.46992 * 299.99371 * 4 2 1 32 32 H 1.08002 * 119.98699 * 359.95410 * 7 6 5 33 33 H 1.07997 * 119.88661 * 180.02562 * 8 7 6 34 34 H 1.08002 * 119.90098 * 179.97438 * 9 8 7 35 35 H 1.07997 * 120.01008 * 180.02562 * 10 9 8 36 36 H 0.97002 * 120.00275 * 214.95003 * 12 11 10 37 37 H 0.97007 * 119.99588 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 2.0063 -0.6737 -1.1668 6 6 1.7234 -0.1030 -2.3676 7 6 0.9103 1.0170 -2.4301 8 6 0.6239 1.5966 -3.6521 9 6 1.1466 1.0615 -4.8165 10 6 1.9581 -0.0547 -4.7648 11 6 2.2558 -0.6402 -3.5405 12 7 3.0799 -1.7653 -3.4844 13 6 4.1043 -1.8941 -4.3506 14 8 4.3676 -0.9887 -5.1212 15 6 4.8755 -3.0841 -4.3647 16 1 4.6423 -3.8870 -3.6811 17 6 5.9404 -3.2183 -5.2658 18 7 6.2223 -2.2474 -6.0931 19 14 6.9567 -4.7855 -5.2839 20 1 6.0777 -5.9419 -5.5926 21 1 8.0144 -4.6777 -6.3208 22 1 7.5857 -4.9830 -3.9533 23 1 -0.3633 0.5885 -0.8425 24 1 -0.3633 -1.0239 -0.0885 25 1 -0.3633 0.4353 0.9309 26 1 1.7508 1.9300 0.9310 27 1 3.1264 1.4438 -0.0887 28 1 1.6061 1.9813 -0.8423 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7209 1.2495 31 1 1.6767 -0.2074 2.1393 32 1 0.4998 1.4373 -1.5239 33 1 -0.0098 2.4698 -3.6982 34 1 0.9191 1.5182 -5.7684 35 1 2.3647 -0.4696 -5.6752 36 1 2.9153 -2.4545 -2.8219 37 1 6.9592 -2.3404 -6.7170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186553449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:07 Heat of formation + Delta-G solvation = -54.155191 kcal Electronic energy + Delta-G solvation = -20124.901709 eV Core-core repulsion = 17060.472641 eV Total energy + Delta-G solvation = -3064.429068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78597 -39.96328 -38.21283 -35.56035 -34.84090 -34.23760 -31.50456 -30.32917 -28.31240 -28.29662 -28.09328 -24.12196 -23.47847 -21.63154 -21.20326 -19.48199 -18.32046 -17.94076 -17.57950 -16.58242 -16.26490 -16.01497 -15.67980 -15.63800 -15.13250 -14.63782 -14.42960 -14.27624 -13.77385 -13.34563 -13.22278 -13.07341 -12.93550 -12.80407 -12.78624 -12.69482 -12.64399 -12.55451 -12.07331 -11.83205 -11.52235 -11.22900 -11.02556 -10.71827 -9.89982 -9.28642 -8.48018 -8.38522 -7.01939 0.52530 0.59207 1.37206 1.40748 1.53191 2.20273 2.31894 2.37223 2.91230 3.07036 3.64835 3.78952 3.88022 3.98595 4.04013 4.18764 4.34620 4.59347 4.64630 4.66330 4.70732 4.76831 4.86542 4.89224 4.94705 5.05193 5.19236 5.20568 5.30907 5.34828 5.40641 5.49582 5.70177 5.87859 5.95415 6.16495 6.29391 6.72215 6.75203 7.40989 8.39222 8.57223 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.005748 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.596932 B = 4870.462715 C = 5760.228176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.136 4.136 5 O -0.329 6.329 6 C 0.084 3.916 7 C -0.201 4.201 8 C -0.116 4.116 9 C -0.142 4.142 10 C -0.126 4.126 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.532 3.468 14 O -0.616 6.616 15 C -0.569 4.569 16 H 0.086 0.914 17 C 0.032 3.968 18 N -0.802 5.802 19 Si 1.003 2.997 20 H -0.253 1.253 21 H -0.269 1.269 22 H -0.254 1.254 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.187 0.813 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.400 0.600 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 4.644 13.272 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.058 3.942 3 C -0.256 4.256 4 C -0.193 4.193 5 O -0.244 6.244 6 C 0.036 3.964 7 C -0.219 4.219 8 C -0.134 4.134 9 C -0.160 4.160 10 C -0.147 4.147 11 C 0.022 3.978 12 N -0.336 5.336 13 C 0.341 3.659 14 O -0.503 6.503 15 C -0.604 4.604 16 H 0.104 0.896 17 C -0.186 4.186 18 N -0.430 5.430 19 Si 0.821 3.179 20 H -0.177 1.177 21 H -0.193 1.193 22 H -0.178 1.178 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.203 0.797 33 H 0.178 0.822 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.234 0.766 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.104 5.116 12.625 17.574 hybrid contribution 0.701 -0.929 -0.207 1.182 sum -10.403 4.188 12.417 16.731 Atomic orbital electron populations 1.22802 0.93340 1.03609 1.04944 1.22138 0.95173 0.92944 0.83945 1.22909 1.01542 0.95959 1.05229 1.21822 1.01483 1.01185 0.94792 1.86095 1.75278 1.50782 1.12266 1.18784 0.99212 0.94531 0.83873 1.22207 1.01847 0.96749 1.01124 1.21247 1.00531 1.00806 0.90860 1.21141 0.98675 0.96016 1.00188 1.20997 0.98878 0.99053 0.95789 1.17680 0.95485 0.92532 0.92081 1.43519 1.30723 1.21276 1.38131 1.17405 0.79681 0.88854 0.79977 1.90592 1.71793 1.43973 1.43985 1.20553 1.15963 1.01965 1.21913 0.89627 1.27039 0.97587 1.01432 0.92517 1.70166 1.24421 1.33515 1.14940 0.85005 0.77301 0.76235 0.79365 1.17685 1.19338 1.17788 0.90158 0.92206 0.88222 0.88066 0.93755 0.89801 0.91808 0.92989 0.87546 0.79687 0.82155 0.84570 0.88589 0.76603 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 8.25 71.98 0.59 -2.88 16 2 C 0.09 2.25 1.11 -10.79 -0.01 2.24 16 3 C -0.20 -4.31 8.08 71.98 0.58 -3.73 16 4 C -0.14 -2.68 8.84 71.98 0.64 -2.04 16 5 O -0.33 -11.50 9.35 -92.74 -0.87 -12.36 16 6 C 0.08 3.17 6.17 22.66 0.14 3.31 16 7 C -0.20 -5.95 6.37 22.34 0.14 -5.81 16 8 C -0.12 -3.33 10.04 22.31 0.22 -3.11 16 9 C -0.14 -5.11 10.04 22.27 0.22 -4.89 16 10 C -0.13 -5.94 8.65 22.40 0.19 -5.75 16 11 C 0.12 5.65 6.26 38.40 0.24 5.89 16 12 N -0.69 -35.83 5.16 -311.02 -1.61 -37.44 16 13 C 0.53 32.71 7.30 85.13 0.62 33.33 16 14 O -0.62 -42.45 12.66 -4.57 -0.06 -42.50 16 15 C -0.57 -33.41 9.32 23.62 0.22 -33.19 16 16 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 17 C 0.03 1.82 5.50 85.33 0.47 2.29 16 18 N -0.80 -49.35 11.73 21.85 0.26 -49.09 16 19 Si 1.00 41.15 29.56 68.60 2.03 43.18 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 H 0.08 1.48 4.55 -2.39 -0.01 1.46 16 24 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.83 4.30 -2.39 -0.01 1.82 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.19 4.04 2.86 -2.91 -0.01 4.03 16 33 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.10 5.31 6.52 -2.91 -0.02 5.29 16 36 H 0.40 18.70 8.52 -92.71 -0.79 17.91 16 37 H 0.28 15.43 8.29 -92.70 -0.77 14.66 16 Total: -1.00 -79.27 301.71 4.34 -74.93 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.31 Total: 37.62 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.27 Total: -14.33 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.35 Total: -86.53 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.92 Total: -54.87 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -79.27 4.34 -74.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186553449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.777 kcal (2) G-P(sol) polarization free energy of solvation -79.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds