Wall clock time and date at job start Sun Mar 29 2020 23:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46798 * 2 1 4 4 H 1.09000 * 109.46908 * 55.00009 * 3 2 1 5 5 C 1.53000 * 109.46748 * 174.99879 * 3 2 1 6 6 N 1.46501 * 109.46842 * 294.99736 * 3 2 1 7 7 C 1.34780 * 119.99510 * 155.00434 * 6 3 2 8 8 O 1.21590 * 120.00046 * 359.97438 * 7 6 3 9 9 C 1.47535 * 119.99849 * 180.02562 * 7 6 3 10 10 C 1.39666 * 120.19596 * 0.02562 * 9 7 6 11 11 C 1.37830 * 119.92216 * 179.97438 * 10 9 7 12 12 C 1.38580 * 120.32044 * 359.97438 * 11 10 9 13 13 C 1.38026 * 120.40073 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.07207 * 0.02562 * 13 12 11 15 15 O 1.35519 * 120.16246 * 180.02562 * 14 13 12 16 16 C 1.34818 * 117.00123 * 354.39673 * 15 14 13 17 17 H 1.08011 * 119.99422 * 5.06547 * 16 15 14 18 18 C 1.38693 * 120.00642 * 185.06428 * 16 15 14 19 19 N 1.31525 * 119.99570 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47267 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46910 * 119.99963 * 20 18 16 23 23 H 1.48494 * 109.47498 * 239.99910 * 20 18 16 24 24 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47262 * 300.00160 * 1 2 3 26 26 H 1.09002 * 109.46931 * 60.00445 * 1 2 3 27 27 H 1.08993 * 109.47406 * 240.00433 * 2 1 3 28 28 H 1.08993 * 109.46980 * 119.99307 * 2 1 3 29 29 H 1.09008 * 109.46715 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.46917 * 299.99613 * 5 3 2 31 31 H 1.09000 * 109.47310 * 60.00376 * 5 3 2 32 32 H 0.96994 * 120.00085 * 335.00238 * 6 3 2 33 33 H 1.08003 * 120.04115 * 359.97438 * 10 9 7 34 34 H 1.07992 * 119.84383 * 180.02562 * 11 10 9 35 35 H 1.07999 * 119.79696 * 180.28209 * 12 11 10 36 36 H 1.07998 * 119.96126 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99271 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 1.6524 2.0975 -1.2519 7 6 1.5256 3.4385 -1.2996 8 8 1.7324 4.1045 -0.3037 9 6 1.1348 4.0980 -2.5601 10 6 0.8947 3.3367 -3.7062 11 6 0.5293 3.9587 -4.8807 12 6 0.3981 5.3373 -4.9308 13 6 0.6321 6.1026 -3.8062 14 6 1.0020 5.4933 -2.6148 15 8 1.2318 6.2428 -1.5093 16 6 1.1979 7.5821 -1.6600 17 1 0.9142 8.0117 -2.6096 18 6 1.5272 8.4084 -0.5958 19 7 1.8730 7.8852 0.5603 20 14 1.4808 10.2640 -0.8049 21 1 1.0641 10.5958 -2.1911 22 1 0.5099 10.8463 0.1561 23 1 2.8310 10.8253 -0.5458 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.9281 2.4722 0.1262 30 1 3.8531 0.9572 1.0572 31 1 3.9995 0.9054 -0.7161 32 1 1.4871 1.5661 -2.0463 33 1 0.9952 2.2619 -3.6722 34 1 0.3435 3.3688 -5.7660 35 1 0.1069 5.8155 -5.8543 36 1 0.5274 7.1764 -3.8531 37 1 2.1037 8.4631 1.3044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194041591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:26 Heat of formation + Delta-G solvation = -46.652040 kcal Electronic energy + Delta-G solvation = -19846.227791 eV Core-core repulsion = 16782.124084 eV Total energy + Delta-G solvation = -3064.103707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62796 -38.30571 -36.34487 -35.78107 -32.34044 -32.06031 -30.46191 -29.18410 -28.87139 -25.37652 -23.94128 -22.97655 -21.58490 -20.52598 -19.82725 -18.00572 -17.49514 -16.16940 -15.80014 -14.66189 -14.46025 -14.39963 -14.18559 -13.86190 -13.69436 -13.54669 -13.28741 -13.02702 -12.73068 -12.47548 -11.96553 -11.70092 -11.64245 -11.34919 -11.15861 -11.08747 -10.99241 -10.89056 -10.77425 -10.51581 -10.42464 -9.53469 -8.86726 -8.77632 -8.47872 -8.24235 -7.28560 -6.42611 -4.02472 1.74858 2.33909 3.12848 3.13707 3.19435 3.77642 3.80436 3.95024 4.67087 4.83082 5.08543 5.12270 5.15181 5.21087 5.47385 5.54924 5.60091 5.67741 5.74854 5.78081 5.87263 5.95903 6.00436 6.06000 6.14618 6.26068 6.37874 6.50482 6.58816 6.72254 6.93905 7.08038 7.10715 7.26376 7.31693 7.71759 7.94548 8.21506 8.97272 9.17921 9.70190 10.71349 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.006210 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.812119 B = 4507.671669 C = 5655.865590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.144 3.856 4 H 0.086 0.914 5 C -0.163 4.163 6 N -0.738 5.738 7 C 0.554 3.446 8 O -0.502 6.502 9 C -0.226 4.226 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.052 4.052 13 C -0.239 4.239 14 C 0.189 3.811 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.833 5.833 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.390 0.610 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -11.905 -5.360 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.039 3.961 4 H 0.104 0.896 5 C -0.221 4.221 6 N -0.393 5.393 7 C 0.343 3.657 8 O -0.376 6.376 9 C -0.231 4.231 10 C -0.058 4.058 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.258 4.258 14 C 0.129 3.871 15 O -0.022 6.022 16 C -0.479 4.479 17 H 0.111 0.889 18 C -0.164 4.164 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.224 0.776 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.782 -11.345 -4.070 12.078 hybrid contribution -0.114 0.648 -0.675 0.943 sum -0.895 -10.697 -4.745 11.736 Atomic orbital electron populations 1.21770 0.95478 1.01116 1.02630 1.21814 0.96470 0.95951 1.02416 1.20842 0.94511 0.92359 0.88422 0.89604 1.22184 0.96006 1.02889 1.01059 1.45977 1.73573 1.07135 1.12651 1.18228 0.77458 0.81307 0.88664 1.90939 1.47960 1.63197 1.35489 1.18899 1.18220 0.91401 0.94615 1.20759 0.95449 0.97672 0.91882 1.20459 1.12225 0.94607 0.97747 1.20891 0.95433 0.93740 0.96948 1.21159 1.10499 1.00892 0.93232 1.19288 0.90720 0.90085 0.86961 1.84178 1.72500 1.18493 1.27067 1.21541 1.48212 0.78273 0.99885 0.88864 1.25386 0.95959 1.00492 0.94524 1.70146 1.38965 1.35856 1.01457 0.85662 0.78383 0.80573 0.78868 1.18983 1.20036 1.20028 0.92995 0.92556 0.92346 0.91780 0.90872 0.91694 0.92283 0.92948 0.77590 0.87097 0.87330 0.87231 0.85108 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.80 37.16 0.36 -1.28 16 2 C -0.13 -1.36 5.47 -26.72 -0.15 -1.51 16 3 C 0.14 2.10 2.57 -67.93 -0.17 1.92 16 4 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 6 N -0.74 -12.01 4.48 -54.84 -0.25 -12.26 16 7 C 0.55 12.28 7.73 -12.47 -0.10 12.18 16 8 O -0.50 -13.82 14.83 -16.57 -0.25 -14.07 16 9 C -0.23 -4.97 5.89 -104.81 -0.62 -5.59 16 10 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 11 C -0.23 -3.83 10.03 -39.60 -0.40 -4.23 16 12 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 13 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 14 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 15 O -0.12 -3.70 7.84 -21.06 -0.17 -3.87 16 16 C -0.40 -11.52 9.49 30.90 0.29 -11.22 16 17 H 0.09 2.42 5.21 -52.48 -0.27 2.15 16 18 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 19 N -0.83 -25.31 13.67 55.48 0.76 -24.55 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.39 5.14 6.63 -40.82 -0.27 4.86 16 33 H 0.11 1.48 6.40 -52.48 -0.34 1.14 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -34.15 313.65 -7.01 -41.16 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.91 Total: 7.13 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.91 Total: -13.93 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.51 Total: -36.81 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.41 Total: -17.94 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.15 -7.01 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194041591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.493 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds