Wall clock time and date at job start Sun Mar 29 2020 23:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 H 1.08995 * 109.47043 * 305.00428 * 3 2 1 5 5 C 1.52999 * 109.47327 * 185.00028 * 3 2 1 6 6 N 1.46496 * 109.46854 * 65.00172 * 3 2 1 7 7 C 1.34774 * 120.00242 * 204.99592 * 6 3 2 8 8 O 1.21590 * 119.99686 * 0.02562 * 7 6 3 9 9 C 1.47535 * 120.00235 * 179.97438 * 7 6 3 10 10 C 1.39666 * 120.19977 * 359.97438 * 9 7 6 11 11 C 1.37826 * 119.92249 * 180.02562 * 10 9 7 12 12 C 1.38571 * 120.32203 * 359.97438 * 11 10 9 13 13 C 1.38025 * 120.40291 * 0.02562 * 12 11 10 14 14 C 1.38830 * 120.07198 * 359.97438 * 13 12 11 15 15 O 1.35518 * 120.16239 * 179.97438 * 14 13 12 16 16 C 1.34820 * 117.00070 * 354.39490 * 15 14 13 17 17 H 1.07997 * 119.99738 * 5.05806 * 16 15 14 18 18 C 1.38700 * 120.00183 * 185.04813 * 16 15 14 19 19 N 1.31520 * 119.99867 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99727 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47267 * 90.00148 * 20 18 16 22 22 H 1.48506 * 109.46696 * 209.99373 * 20 18 16 23 23 H 1.48498 * 109.47301 * 329.99404 * 20 18 16 24 24 H 1.09001 * 109.46725 * 299.99705 * 1 2 3 25 25 H 1.09004 * 109.47110 * 59.99618 * 1 2 3 26 26 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47248 * 240.00266 * 2 1 3 28 28 H 1.08996 * 109.47361 * 120.00335 * 2 1 3 29 29 H 1.09000 * 109.47098 * 59.99758 * 5 3 2 30 30 H 1.08996 * 109.47377 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.47229 * 300.00765 * 5 3 2 32 32 H 0.97004 * 120.00291 * 25.00013 * 6 3 2 33 33 H 1.08003 * 120.03699 * 0.03770 * 10 9 7 34 34 H 1.08001 * 119.83995 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.80208 * 180.27644 * 12 11 10 36 36 H 1.08003 * 119.96586 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99390 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4383 1.2997 8 8 1.7325 4.1045 0.3038 9 6 1.1348 4.0978 2.5603 10 6 0.8947 3.3366 3.7063 11 6 0.5293 3.9585 4.8808 12 6 0.3992 5.3372 4.9311 13 6 0.6333 6.1025 3.8066 14 6 1.0022 5.4932 2.6149 15 8 1.2320 6.2427 1.5095 16 6 0.9732 7.5628 1.6004 17 1 0.6785 7.9913 2.5469 18 6 1.0856 8.3704 0.4784 19 7 0.8336 9.6582 0.5673 20 14 1.5949 7.6290 -1.1587 21 1 0.3859 7.1909 -1.9013 22 1 2.3245 8.6466 -1.9573 23 1 2.4794 6.4605 -0.9192 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8532 0.9571 -1.0571 30 1 3.9282 2.4720 -0.1253 31 1 3.9995 0.9053 0.7160 32 1 1.4871 1.5660 2.0463 33 1 0.9953 2.2618 3.6723 34 1 0.3443 3.3686 5.7663 35 1 0.1168 5.8162 5.8570 36 1 0.5302 7.1765 3.8539 37 1 0.9119 10.2229 -0.2175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194041609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:28 Heat of formation + Delta-G solvation = -47.292629 kcal Electronic energy + Delta-G solvation = -19955.053922 eV Core-core repulsion = 16890.922437 eV Total energy + Delta-G solvation = -3064.131485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83954 -38.51424 -36.54556 -35.97234 -32.45057 -32.24821 -30.59559 -29.32790 -29.16950 -25.31763 -24.07687 -23.14362 -21.56130 -20.62690 -20.05330 -17.89141 -17.77981 -16.40765 -15.99886 -14.82852 -14.61530 -14.44156 -14.21882 -13.90186 -13.81220 -13.62007 -13.42441 -13.23443 -12.86675 -12.33941 -12.17686 -12.11368 -11.76890 -11.44223 -11.28040 -11.24494 -11.10469 -10.85498 -10.71404 -10.63721 -10.03661 -9.59754 -9.00945 -8.88063 -8.68961 -8.36554 -7.46707 -6.46130 -4.11078 1.59396 2.19807 3.32363 3.38898 3.59399 3.60992 3.67591 4.36710 4.53568 4.69963 4.75271 4.99761 5.03967 5.10459 5.32470 5.39493 5.46494 5.56275 5.62645 5.65635 5.75152 5.85177 5.88453 5.92370 6.05156 6.15306 6.22369 6.34921 6.39316 6.56850 6.83457 6.91110 7.02640 7.15783 7.49129 7.69067 7.95945 8.01725 8.88467 8.93829 9.53134 10.59011 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.007559 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.876524 B = 3703.121302 C = 5075.091894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.142 3.858 4 H 0.086 0.914 5 C -0.163 4.163 6 N -0.735 5.735 7 C 0.561 3.439 8 O -0.519 6.519 9 C -0.226 4.226 10 C -0.041 4.041 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.227 4.227 14 C 0.201 3.799 15 O -0.166 6.166 16 C -0.396 4.396 17 H 0.108 0.892 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.900 3.100 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.238 1.238 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.392 0.608 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -17.318 3.194 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.037 3.963 4 H 0.104 0.896 5 C -0.222 4.222 6 N -0.390 5.390 7 C 0.351 3.649 8 O -0.395 6.395 9 C -0.231 4.231 10 C -0.060 4.060 11 C -0.241 4.241 12 C -0.070 4.070 13 C -0.246 4.246 14 C 0.143 3.857 15 O -0.066 6.066 16 C -0.471 4.471 17 H 0.125 0.875 18 C -0.134 4.134 19 N -0.506 5.506 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.161 1.161 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.075 -16.623 2.066 16.785 hybrid contribution 0.025 -0.274 -0.089 0.289 sum 1.099 -16.896 1.977 17.047 Atomic orbital electron populations 1.21775 0.95395 1.01262 1.02616 1.21815 0.96530 0.95772 1.02554 1.20877 0.94589 0.92547 0.88253 0.89601 1.22185 0.95886 1.02825 1.01275 1.45967 1.73082 1.07085 1.12850 1.18192 0.76906 0.81341 0.88480 1.90846 1.49156 1.63564 1.35923 1.18897 1.18452 0.91125 0.94618 1.20760 0.95640 0.97779 0.91809 1.20535 1.11048 0.94677 0.97800 1.20960 0.95193 0.93694 0.97145 1.21288 1.09205 1.01426 0.92731 1.19035 0.90393 0.89334 0.86932 1.83783 1.70813 1.20637 1.31330 1.20923 1.47531 0.79221 0.99441 0.87482 1.24494 0.95089 0.94419 0.99399 1.69642 1.45222 1.03915 1.31798 0.86196 0.80437 0.79833 0.81018 1.19971 1.21294 1.16095 0.92322 0.92569 0.92877 0.90784 0.91669 0.92162 0.91803 0.92787 0.77314 0.86891 0.87047 0.86863 0.84447 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.80 37.16 0.36 -1.13 16 2 C -0.13 -1.22 5.47 -26.73 -0.15 -1.37 16 3 C 0.14 1.87 2.57 -67.93 -0.17 1.70 16 4 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 5 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 6 N -0.73 -10.83 4.48 -54.85 -0.25 -11.08 16 7 C 0.56 11.37 7.73 -12.47 -0.10 11.28 16 8 O -0.52 -12.94 14.83 -16.57 -0.25 -13.18 16 9 C -0.23 -4.61 5.89 -104.81 -0.62 -5.23 16 10 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 11 C -0.22 -3.44 10.02 -39.61 -0.40 -3.84 16 12 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 13 C -0.23 -4.83 9.16 -39.44 -0.36 -5.19 16 14 C 0.20 4.78 6.66 -38.60 -0.26 4.52 16 15 O -0.17 -4.59 6.67 -21.06 -0.14 -4.73 16 16 C -0.40 -11.42 9.95 30.90 0.31 -11.11 16 17 H 0.11 3.07 5.44 -52.49 -0.29 2.79 16 18 C 0.07 2.07 5.49 -17.51 -0.10 1.97 16 19 N -0.87 -25.44 13.96 55.48 0.77 -24.67 16 20 Si 0.90 23.41 28.62 -169.99 -4.86 18.55 16 21 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.24 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.39 4.60 6.63 -40.82 -0.27 4.33 16 33 H 0.11 1.36 6.40 -52.48 -0.34 1.02 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.14 3.03 5.64 -52.48 -0.30 2.74 16 37 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -32.60 312.53 -6.83 -39.43 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.92 Total: 3.38 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.89 Total: -12.40 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.53 Total: -35.75 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.39 Total: -17.92 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.86 Total: 18.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.60 -6.83 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194041609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.867 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds