Wall clock time and date at job start Sun Mar 29 2020 23:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 H 1.08995 * 109.47043 * 305.00428 * 3 2 1 5 5 C 1.52999 * 109.47327 * 185.00028 * 3 2 1 6 6 N 1.46496 * 109.46854 * 65.00172 * 3 2 1 7 7 C 1.34774 * 120.00242 * 204.99592 * 6 3 2 8 8 O 1.21590 * 119.99686 * 0.02562 * 7 6 3 9 9 C 1.47535 * 120.00235 * 179.97438 * 7 6 3 10 10 C 1.39666 * 120.19977 * 359.97438 * 9 7 6 11 11 C 1.37826 * 119.92249 * 180.02562 * 10 9 7 12 12 C 1.38571 * 120.32203 * 359.97438 * 11 10 9 13 13 C 1.38025 * 120.40291 * 0.02562 * 12 11 10 14 14 C 1.38830 * 120.07198 * 359.97438 * 13 12 11 15 15 O 1.35518 * 120.16239 * 179.97438 * 14 13 12 16 16 C 1.34820 * 117.00070 * 354.39490 * 15 14 13 17 17 H 1.07997 * 119.99738 * 5.05806 * 16 15 14 18 18 C 1.38700 * 120.00183 * 185.04813 * 16 15 14 19 19 N 1.31520 * 119.99867 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99727 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47267 * 90.00148 * 20 18 16 22 22 H 1.48506 * 109.46696 * 209.99373 * 20 18 16 23 23 H 1.48498 * 109.47301 * 329.99404 * 20 18 16 24 24 H 1.09001 * 109.46725 * 299.99705 * 1 2 3 25 25 H 1.09004 * 109.47110 * 59.99618 * 1 2 3 26 26 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47248 * 240.00266 * 2 1 3 28 28 H 1.08996 * 109.47361 * 120.00335 * 2 1 3 29 29 H 1.09000 * 109.47098 * 59.99758 * 5 3 2 30 30 H 1.08996 * 109.47377 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.47229 * 300.00765 * 5 3 2 32 32 H 0.97004 * 120.00291 * 25.00013 * 6 3 2 33 33 H 1.08003 * 120.03699 * 0.03770 * 10 9 7 34 34 H 1.08001 * 119.83995 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.80208 * 180.27644 * 12 11 10 36 36 H 1.08003 * 119.96586 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99390 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4383 1.2997 8 8 1.7325 4.1045 0.3038 9 6 1.1348 4.0978 2.5603 10 6 0.8947 3.3366 3.7063 11 6 0.5293 3.9585 4.8808 12 6 0.3992 5.3372 4.9311 13 6 0.6333 6.1025 3.8066 14 6 1.0022 5.4932 2.6149 15 8 1.2320 6.2427 1.5095 16 6 0.9732 7.5628 1.6004 17 1 0.6785 7.9913 2.5469 18 6 1.0856 8.3704 0.4784 19 7 0.8336 9.6582 0.5673 20 14 1.5949 7.6290 -1.1587 21 1 0.3859 7.1909 -1.9013 22 1 2.3245 8.6466 -1.9573 23 1 2.4794 6.4605 -0.9192 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8532 0.9571 -1.0571 30 1 3.9282 2.4720 -0.1253 31 1 3.9995 0.9053 0.7160 32 1 1.4871 1.5660 2.0463 33 1 0.9953 2.2618 3.6723 34 1 0.3443 3.3686 5.7663 35 1 0.1168 5.8162 5.8570 36 1 0.5302 7.1765 3.8539 37 1 0.9119 10.2229 -0.2175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194041609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:28 Heat of formation + Delta-G solvation = -68.729902 kcal Electronic energy + Delta-G solvation = -19955.983512 eV Core-core repulsion = 16890.922437 eV Total energy + Delta-G solvation = -3065.061075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42976 -40.09200 -38.17849 -37.26946 -34.53051 -33.57700 -31.84547 -30.79261 -30.45452 -27.30714 -25.30130 -24.33763 -23.09119 -21.87539 -21.48769 -19.81267 -19.39487 -18.01481 -17.33166 -16.53797 -16.17851 -15.95709 -15.72505 -15.48316 -15.39108 -14.84120 -14.54289 -14.49882 -14.32223 -14.16337 -14.02771 -13.26166 -13.11224 -12.84211 -12.65085 -12.59326 -12.39627 -12.23833 -12.03295 -11.92274 -11.61758 -11.51316 -10.98053 -10.65963 -10.10486 -9.80913 -9.14468 -8.58996 -6.27398 0.06623 0.65071 1.22574 1.28093 1.56609 2.06003 2.27976 2.29570 2.75402 3.02780 3.17324 3.76198 3.96949 4.02668 4.11864 4.21148 4.26492 4.48300 4.50006 4.57747 4.66252 4.76462 4.80933 4.88229 4.99660 5.08409 5.12325 5.21405 5.28256 5.29564 5.43828 5.47803 5.62244 5.66474 5.69883 5.83608 6.16054 6.70255 6.78847 7.45719 7.59023 8.51572 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.007559 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.876524 B = 3703.121302 C = 5075.091894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.135 3.865 4 H 0.052 0.948 5 C -0.158 4.158 6 N -0.708 5.708 7 C 0.553 3.447 8 O -0.576 6.576 9 C -0.234 4.234 10 C -0.030 4.030 11 C -0.189 4.189 12 C -0.043 4.043 13 C -0.252 4.252 14 C 0.159 3.841 15 O -0.210 6.210 16 C -0.402 4.402 17 H 0.092 0.908 18 C 0.026 3.974 19 N -0.911 5.911 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.265 1.265 23 H -0.268 1.268 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -22.094 5.678 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.031 3.969 4 H 0.070 0.930 5 C -0.217 4.217 6 N -0.363 5.363 7 C 0.343 3.657 8 O -0.456 6.456 9 C -0.238 4.238 10 C -0.048 4.048 11 C -0.207 4.207 12 C -0.061 4.061 13 C -0.271 4.271 14 C 0.106 3.894 15 O -0.114 6.114 16 C -0.478 4.478 17 H 0.109 0.891 18 C -0.174 4.174 19 N -0.551 5.551 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.190 1.190 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.250 0.750 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.168 0.832 36 H 0.132 0.868 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.948 -21.483 4.606 21.992 hybrid contribution 0.012 0.792 -0.507 0.940 sum 0.960 -20.692 4.099 21.115 Atomic orbital electron populations 1.21798 0.95660 1.02366 1.01405 1.21771 0.96131 0.92728 1.04767 1.21083 0.95097 0.94481 0.86233 0.93014 1.22141 0.95205 1.00787 1.03536 1.45759 1.70969 1.05234 1.14359 1.18401 0.76554 0.82920 0.87799 1.90832 1.51717 1.65258 1.37764 1.19355 1.17791 0.90185 0.96510 1.21359 0.93295 1.00110 0.90066 1.21242 1.06258 0.94028 0.99173 1.21444 0.93134 0.94749 0.96811 1.21333 1.10959 1.00988 0.93820 1.19803 0.91657 0.90923 0.87008 1.83774 1.74563 1.19738 1.33370 1.20893 1.47500 0.80523 0.98919 0.89106 1.25031 0.95990 0.94873 1.01545 1.69684 1.48338 1.04500 1.32567 0.85413 0.79430 0.78354 0.78817 1.20258 1.18955 1.19214 0.93033 0.94395 0.90574 0.88969 0.88974 0.89986 0.95929 0.90451 0.75026 0.81612 0.81494 0.83161 0.86808 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.80 71.98 0.71 -1.83 16 2 C -0.12 -1.75 5.47 30.60 0.17 -1.58 16 3 C 0.14 3.35 2.57 44.99 0.12 3.47 16 4 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 5 C -0.16 -3.73 9.48 71.98 0.68 -3.04 16 6 N -0.71 -19.34 4.48 -445.72 -2.00 -21.34 16 7 C 0.55 22.51 7.73 86.70 0.67 23.18 16 8 O -0.58 -30.28 14.83 16.90 0.25 -30.03 16 9 C -0.23 -9.30 5.89 -19.99 -0.12 -9.42 16 10 C -0.03 -0.81 9.53 22.52 0.21 -0.59 16 11 C -0.19 -4.65 10.02 22.25 0.22 -4.43 16 12 C -0.04 -1.33 10.03 22.30 0.22 -1.11 16 13 C -0.25 -10.88 9.16 22.36 0.20 -10.67 16 14 C 0.16 7.84 6.66 22.91 0.15 8.00 16 15 O -0.21 -12.50 6.67 0.80 0.01 -12.49 16 16 C -0.40 -24.99 9.95 67.93 0.68 -24.32 16 17 H 0.09 5.70 5.44 -2.91 -0.02 5.68 16 18 C 0.03 1.59 5.49 84.85 0.47 2.06 16 19 N -0.91 -56.44 13.96 21.62 0.30 -56.14 16 20 Si 0.96 51.89 28.62 68.60 1.96 53.85 16 21 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 22 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.27 -15.67 7.11 99.48 0.71 -14.96 16 24 H 0.05 0.90 7.75 -2.39 -0.02 0.89 16 25 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.41 7.71 6.63 -92.71 -0.61 7.10 16 33 H 0.17 2.71 6.40 -2.91 -0.02 2.69 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 37 H 0.29 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -81.08 312.53 5.37 -75.70 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.46 Total: 10.75 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 4.38 Total: -20.30 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.69 Total: -77.48 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: 0.26 Total: -42.52 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 1.96 Total: 53.85 kcal Total: -81.08 5.37 -75.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194041609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.972 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds