Wall clock time and date at job start Mon Mar 30 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47157 * 2 1 4 4 O 1.42894 * 109.47334 * 180.02562 * 3 2 1 5 5 C 1.42895 * 114.00322 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47314 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00159 * 354.93709 * 6 5 4 8 8 N 1.34781 * 120.00051 * 174.94029 * 6 5 4 9 9 C 1.37142 * 119.99618 * 5.67135 * 8 6 5 10 10 H 1.07999 * 119.99993 * 55.67720 * 9 8 6 11 11 C 1.38887 * 119.99810 * 235.66975 * 9 8 6 12 12 N 1.31419 * 120.00643 * 9.25167 * 11 9 8 13 13 Si 1.86806 * 119.99583 * 189.25382 * 11 9 8 14 14 H 1.48499 * 109.47640 * 60.00024 * 13 11 9 15 15 H 1.48500 * 109.47042 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46829 * 299.99514 * 13 11 9 17 17 C 1.39790 * 119.99988 * 185.67780 * 8 6 5 18 18 C 1.38954 * 120.07520 * 175.18434 * 17 8 6 19 19 C 1.38084 * 119.92158 * 179.97438 * 18 17 8 20 20 C 1.38310 * 120.07408 * 0.02562 * 19 18 17 21 21 C 1.38304 * 120.16015 * 359.97438 * 20 19 18 22 22 C 1.38082 * 120.07567 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46618 * 299.99701 * 1 2 3 24 24 H 1.09001 * 109.47496 * 59.99489 * 1 2 3 25 25 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46972 * 240.00704 * 2 1 3 27 27 H 1.09001 * 109.47496 * 120.00511 * 2 1 3 28 28 H 1.08999 * 109.46604 * 60.00479 * 3 2 1 29 29 H 1.09001 * 109.47335 * 300.00610 * 3 2 1 30 30 H 1.09000 * 109.47116 * 60.00325 * 5 4 3 31 31 H 1.09002 * 109.47323 * 300.00440 * 5 4 3 32 32 H 0.96997 * 120.00057 * 184.98761 * 12 11 9 33 33 H 1.07997 * 120.04159 * 359.70640 * 18 17 8 34 34 H 1.08003 * 119.96238 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.91749 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.96645 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.04172 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6290 -0.0025 7 8 6.0745 1.5382 0.0899 8 7 6.3160 3.7348 -0.1062 9 6 5.7314 4.9753 -0.0934 10 1 5.0954 5.2641 0.7303 11 6 5.9574 5.8603 -1.1397 12 7 6.5776 5.4516 -2.2238 13 14 5.3799 7.6318 -1.0058 14 1 6.0344 8.2792 0.1594 15 1 5.7393 8.3647 -2.2463 16 1 3.9062 7.6596 -0.8244 17 6 7.7037 3.6173 -0.2269 18 6 8.4830 4.7489 -0.4342 19 6 9.8536 4.6291 -0.5525 20 6 10.4507 3.3846 -0.4653 21 6 9.6781 2.2562 -0.2590 22 6 8.3070 2.3685 -0.1398 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.7290 3.2891 0.8888 31 1 3.7281 3.2887 -0.8912 32 1 6.7998 6.0854 -2.9236 33 1 8.0170 5.7204 -0.5071 34 1 10.4599 5.5082 -0.7141 35 1 11.5228 3.2938 -0.5585 36 1 10.1476 1.2860 -0.1910 37 1 7.7042 1.4869 0.0209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195114330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:55 Heat of formation + Delta-G solvation = -40.515833 kcal Electronic energy + Delta-G solvation = -19812.721180 eV Core-core repulsion = 16748.883559 eV Total energy + Delta-G solvation = -3063.837621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72216 -37.80683 -36.77368 -35.02151 -33.50172 -31.99946 -29.66519 -29.40854 -27.24148 -25.40152 -25.00846 -21.71543 -21.45104 -21.10635 -19.46380 -17.83257 -16.58074 -16.10678 -15.56359 -15.48277 -15.21741 -14.72276 -14.50022 -14.00547 -13.44727 -13.27634 -13.00805 -12.80803 -12.33253 -12.15229 -11.96276 -11.79482 -11.55812 -11.44087 -11.26865 -11.12050 -10.84516 -10.73911 -10.68158 -10.53563 -10.03847 -9.26068 -9.22568 -8.76728 -8.09271 -7.78484 -6.90874 -6.34127 -4.60626 2.42694 2.57598 3.00444 3.08467 3.09733 3.57754 3.81467 3.96844 4.69562 4.77076 5.03027 5.12494 5.15066 5.44855 5.53976 5.59211 5.71601 5.82187 5.88568 5.88965 5.96072 6.04357 6.10498 6.17542 6.20901 6.27780 6.71615 6.74304 6.91398 7.14335 7.19640 7.50565 7.54009 7.62893 7.70715 7.78552 8.02735 8.43310 8.80318 9.22394 9.59176 10.43028 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.006613 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.729357 B = 4232.886129 C = 5732.129641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.061 3.939 4 O -0.372 6.372 5 C 0.067 3.933 6 C 0.497 3.503 7 O -0.547 6.547 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.093 0.907 11 C 0.057 3.943 12 N -0.839 5.839 13 Si 0.915 3.085 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.268 1.268 17 C 0.186 3.814 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.174 4.174 21 C -0.120 4.120 22 C -0.193 4.193 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.276 0.724 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -1.762 2.666 6.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.291 6.291 5 C -0.012 4.012 6 C 0.288 3.712 7 O -0.430 6.430 8 N -0.093 5.093 9 C -0.503 4.503 10 H 0.111 0.889 11 C -0.153 4.153 12 N -0.470 5.470 13 Si 0.739 3.261 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.193 1.193 17 C 0.089 3.911 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.193 4.193 21 C -0.139 4.139 22 C -0.212 4.212 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.556 -2.413 2.472 6.542 hybrid contribution -0.275 1.498 -0.261 1.546 sum -5.831 -0.915 2.211 6.303 Atomic orbital electron populations 1.21692 0.95116 1.01866 1.01883 1.21438 0.95201 0.96014 1.03411 1.22511 0.81773 0.97423 0.99914 1.87930 1.18486 1.27190 1.95466 1.21971 0.92225 0.84502 1.02512 1.20474 0.88649 0.83796 0.78280 1.90195 1.72908 1.28035 1.51833 1.40857 1.02330 1.05759 1.60323 1.19309 1.33448 0.90947 1.06561 0.88926 1.25636 0.95454 1.00660 0.93579 1.70024 1.35831 1.35610 1.05576 0.86201 0.79764 0.81825 0.78284 1.19219 1.20469 1.19254 1.18250 0.83632 0.93398 0.95779 1.21012 0.92219 0.99137 1.00319 1.20768 0.94567 0.96568 1.02372 1.20791 0.98333 0.93371 1.06793 1.20870 0.94067 0.97265 1.01654 1.22816 0.95262 0.99522 1.03648 0.92662 0.92610 0.92291 0.91137 0.91177 0.93661 0.93539 0.91096 0.90017 0.91315 0.85101 0.87756 0.88162 0.87671 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.53 6.30 -26.73 -0.17 -1.70 16 3 C 0.06 0.89 5.94 37.16 0.22 1.11 16 4 O -0.37 -7.35 9.88 -55.09 -0.54 -7.90 16 5 C 0.07 1.37 5.24 36.01 0.19 1.56 16 6 C 0.50 12.26 7.64 -10.98 -0.08 12.17 16 7 O -0.55 -14.43 12.90 -14.30 -0.18 -14.62 16 8 N -0.38 -9.76 2.62 -58.98 -0.15 -9.92 16 9 C -0.38 -9.13 7.61 -14.94 -0.11 -9.24 16 10 H 0.09 2.11 7.85 -52.49 -0.41 1.69 16 11 C 0.06 1.36 3.49 -17.49 -0.06 1.30 16 12 N -0.84 -21.58 11.39 55.49 0.63 -20.95 16 13 Si 0.91 18.19 29.57 -169.99 -5.03 13.17 16 14 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 15 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 17 C 0.19 4.76 6.05 -83.70 -0.51 4.26 16 18 C -0.11 -2.57 7.87 -39.37 -0.31 -2.88 16 19 C -0.12 -2.64 10.04 -39.61 -0.40 -3.04 16 20 C -0.17 -3.51 10.04 -39.53 -0.40 -3.91 16 21 C -0.12 -2.55 10.04 -39.61 -0.40 -2.95 16 22 C -0.19 -4.72 9.06 -39.37 -0.36 -5.08 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.65 8.05 -51.93 -0.42 1.23 16 32 H 0.28 6.72 8.32 -40.82 -0.34 6.38 16 33 H 0.13 3.24 5.15 -52.49 -0.27 2.97 16 34 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 35 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.18 4.45 4.50 -56.37 -0.25 4.19 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -28.87 310.10 -7.76 -36.63 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.14 Total: 8.34 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.01 Total: -9.43 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.48 Total: -30.87 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.73 Total: -22.52 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.87 -7.76 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195114330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.885 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds