Wall clock time and date at job start Mon Mar 30 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47157 * 2 1 4 4 O 1.42894 * 109.47334 * 180.02562 * 3 2 1 5 5 C 1.42895 * 114.00322 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47314 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00159 * 354.93709 * 6 5 4 8 8 N 1.34781 * 120.00051 * 174.94029 * 6 5 4 9 9 C 1.37142 * 119.99618 * 5.67135 * 8 6 5 10 10 H 1.07999 * 119.99993 * 55.67720 * 9 8 6 11 11 C 1.38887 * 119.99810 * 235.66975 * 9 8 6 12 12 N 1.31419 * 120.00643 * 9.25167 * 11 9 8 13 13 Si 1.86806 * 119.99583 * 189.25382 * 11 9 8 14 14 H 1.48499 * 109.47640 * 60.00024 * 13 11 9 15 15 H 1.48500 * 109.47042 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46829 * 299.99514 * 13 11 9 17 17 C 1.39790 * 119.99988 * 185.67780 * 8 6 5 18 18 C 1.38954 * 120.07520 * 175.18434 * 17 8 6 19 19 C 1.38084 * 119.92158 * 179.97438 * 18 17 8 20 20 C 1.38310 * 120.07408 * 0.02562 * 19 18 17 21 21 C 1.38304 * 120.16015 * 359.97438 * 20 19 18 22 22 C 1.38082 * 120.07567 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46618 * 299.99701 * 1 2 3 24 24 H 1.09001 * 109.47496 * 59.99489 * 1 2 3 25 25 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46972 * 240.00704 * 2 1 3 27 27 H 1.09001 * 109.47496 * 120.00511 * 2 1 3 28 28 H 1.08999 * 109.46604 * 60.00479 * 3 2 1 29 29 H 1.09001 * 109.47335 * 300.00610 * 3 2 1 30 30 H 1.09000 * 109.47116 * 60.00325 * 5 4 3 31 31 H 1.09002 * 109.47323 * 300.00440 * 5 4 3 32 32 H 0.96997 * 120.00057 * 184.98761 * 12 11 9 33 33 H 1.07997 * 120.04159 * 359.70640 * 18 17 8 34 34 H 1.08003 * 119.96238 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.91749 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.96645 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.04172 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6290 -0.0025 7 8 6.0745 1.5382 0.0899 8 7 6.3160 3.7348 -0.1062 9 6 5.7314 4.9753 -0.0934 10 1 5.0954 5.2641 0.7303 11 6 5.9574 5.8603 -1.1397 12 7 6.5776 5.4516 -2.2238 13 14 5.3799 7.6318 -1.0058 14 1 6.0344 8.2792 0.1594 15 1 5.7393 8.3647 -2.2463 16 1 3.9062 7.6596 -0.8244 17 6 7.7037 3.6173 -0.2269 18 6 8.4830 4.7489 -0.4342 19 6 9.8536 4.6291 -0.5525 20 6 10.4507 3.3846 -0.4653 21 6 9.6781 2.2562 -0.2590 22 6 8.3070 2.3685 -0.1398 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.7290 3.2891 0.8888 31 1 3.7281 3.2887 -0.8912 32 1 6.7998 6.0854 -2.9236 33 1 8.0170 5.7204 -0.5071 34 1 10.4599 5.5082 -0.7141 35 1 11.5228 3.2938 -0.5585 36 1 10.1476 1.2860 -0.1910 37 1 7.7042 1.4869 0.0209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195114330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:55 Heat of formation + Delta-G solvation = -55.735639 kcal Electronic energy + Delta-G solvation = -19813.381161 eV Core-core repulsion = 16748.883559 eV Total energy + Delta-G solvation = -3064.497601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53742 -39.37817 -38.39133 -36.86065 -34.56356 -33.85967 -31.40604 -31.12066 -28.74729 -27.08585 -26.38238 -23.46982 -22.89759 -22.44578 -21.27542 -19.61647 -18.24071 -17.61273 -17.20679 -17.07131 -16.85969 -16.35196 -16.01265 -15.54783 -14.86509 -14.81096 -14.73558 -14.33695 -13.97785 -13.71659 -13.37722 -13.10220 -12.94867 -12.90711 -12.82157 -12.79526 -12.43351 -12.14497 -11.81304 -11.77138 -11.73902 -11.06145 -10.64190 -10.56363 -9.94456 -9.54730 -8.73738 -8.16332 -6.49569 0.65858 0.80149 1.43006 1.46903 1.56174 1.87046 2.15057 2.35516 2.89750 3.24473 3.34385 3.96578 4.03738 4.16654 4.27864 4.31667 4.38925 4.43444 4.44248 4.56519 4.60597 4.65436 4.89080 4.93199 4.98958 5.14515 5.14975 5.24076 5.33664 5.36696 5.41225 5.78290 5.87328 5.87674 6.01004 6.18542 6.22989 6.61053 6.95887 7.36971 7.74506 8.62627 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.006613 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.729357 B = 4232.886129 C = 5732.129641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.400 6.400 5 C 0.081 3.919 6 C 0.476 3.524 7 O -0.577 6.577 8 N -0.394 5.394 9 C -0.390 4.390 10 H 0.104 0.896 11 C 0.023 3.977 12 N -0.876 5.876 13 Si 0.983 3.017 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.255 1.255 17 C 0.152 3.848 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.163 4.163 21 C -0.119 4.119 22 C -0.220 4.220 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.276 0.724 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -0.754 2.954 6.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.319 6.319 5 C 0.002 3.998 6 C 0.269 3.731 7 O -0.462 6.462 8 N -0.103 5.103 9 C -0.516 4.516 10 H 0.121 0.879 11 C -0.184 4.184 12 N -0.509 5.509 13 Si 0.804 3.196 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.179 1.179 17 C 0.056 3.944 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.182 4.182 21 C -0.138 4.138 22 C -0.240 4.240 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.631 -1.407 2.774 6.433 hybrid contribution -0.184 1.116 -0.347 1.183 sum -5.815 -0.291 2.426 6.308 Atomic orbital electron populations 1.21660 0.92440 1.03077 1.02682 1.21479 0.97383 0.94426 1.02672 1.22865 0.79134 0.99261 1.01213 1.87904 1.21506 1.26834 1.95682 1.21791 0.89550 0.85191 1.03290 1.21275 0.90515 0.83419 0.77926 1.90172 1.73861 1.28913 1.53237 1.41127 1.02723 1.06326 1.60151 1.19694 1.33783 0.90936 1.07211 0.87860 1.26424 0.94893 1.04357 0.92703 1.70149 1.37277 1.36989 1.06466 0.85165 0.79842 0.76534 0.78050 1.18676 1.20699 1.17915 1.18641 0.84182 0.94349 0.97262 1.21071 0.93616 0.98221 1.01682 1.21184 0.93690 0.98483 1.00870 1.21236 1.00385 0.92202 1.04379 1.21240 0.92904 0.99371 1.00286 1.22814 0.96873 0.98743 1.05536 0.91662 0.91994 0.90920 0.92175 0.91713 0.91837 0.92611 0.88980 0.90147 0.91388 0.86271 0.84620 0.83829 0.84698 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.96 6.30 30.60 0.19 -2.76 16 3 C 0.05 1.47 5.94 71.98 0.43 1.89 16 4 O -0.40 -16.06 9.88 -129.99 -1.28 -17.34 16 5 C 0.08 3.36 5.24 71.24 0.37 3.73 16 6 C 0.48 24.40 7.64 87.66 0.67 25.07 16 7 O -0.58 -31.96 12.90 15.95 0.21 -31.75 16 8 N -0.39 -20.68 2.62 -458.89 -1.20 -21.89 16 9 C -0.39 -19.17 7.61 84.02 0.64 -18.54 16 10 H 0.10 4.69 7.85 -2.91 -0.02 4.67 16 11 C 0.02 1.10 3.49 84.91 0.30 1.40 16 12 N -0.88 -45.74 11.39 21.65 0.25 -45.50 16 13 Si 0.98 36.80 29.57 68.60 2.03 38.83 16 14 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 17 C 0.15 7.98 6.05 38.22 0.23 8.21 16 18 C -0.13 -6.08 7.87 22.40 0.18 -5.91 16 19 C -0.12 -5.04 10.04 22.25 0.22 -4.82 16 20 C -0.16 -6.13 10.04 22.30 0.22 -5.91 16 21 C -0.12 -4.95 10.04 22.25 0.22 -4.73 16 22 C -0.22 -11.02 9.06 22.41 0.20 -10.82 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 31 H 0.08 3.31 8.05 -2.39 -0.02 3.29 16 32 H 0.28 13.61 8.32 -92.71 -0.77 12.84 16 33 H 0.12 5.98 5.15 -2.91 -0.02 5.96 16 34 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 36 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.16 8.38 4.50 -64.48 -0.29 8.09 16 Total: -1.00 -64.20 310.10 5.36 -58.83 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.78 Total: 33.69 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 4.59 Total: -14.87 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -0.96 Total: -67.38 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.08 Total: -49.09 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -64.20 5.36 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195114330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.097 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds