Wall clock time and date at job start Mon Mar 30 2020 00:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00104 * 2 1 4 4 H 1.09003 * 109.47037 * 330.00506 * 3 2 1 5 5 C 1.53003 * 109.46999 * 90.00060 * 3 2 1 6 6 C 1.52995 * 109.47260 * 210.00073 * 3 2 1 7 7 C 1.50694 * 109.47172 * 65.00341 * 6 3 2 8 8 O 1.21281 * 120.00114 * 359.97438 * 7 6 3 9 9 N 1.34784 * 120.00412 * 179.97438 * 7 6 3 10 10 C 1.37136 * 119.99872 * 4.37154 * 9 7 6 11 11 H 1.08001 * 119.99804 * 342.67912 * 10 9 7 12 12 C 1.38887 * 120.00347 * 162.67950 * 10 9 7 13 13 N 1.31425 * 119.99773 * 340.97761 * 12 10 9 14 14 Si 1.86799 * 120.00088 * 160.97434 * 12 10 9 15 15 H 1.48506 * 109.46668 * 90.00265 * 14 12 10 16 16 H 1.48501 * 109.47041 * 210.00045 * 14 12 10 17 17 H 1.48500 * 109.47218 * 330.00287 * 14 12 10 18 18 C 1.39784 * 120.00027 * 184.37350 * 9 7 6 19 19 C 1.38958 * 120.07990 * 106.22129 * 18 9 7 20 20 C 1.38079 * 119.92543 * 180.29490 * 19 18 9 21 21 C 1.38312 * 120.07662 * 359.97438 * 20 19 18 22 22 C 1.38304 * 120.15570 * 0.02562 * 21 20 19 23 23 C 1.38085 * 120.07967 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.46856 * 299.99410 * 1 2 3 25 25 H 1.08999 * 109.47232 * 59.99491 * 1 2 3 26 26 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46863 * 60.00339 * 5 3 2 28 28 H 1.08999 * 109.47237 * 179.97438 * 5 3 2 29 29 H 1.08993 * 109.47461 * 300.00668 * 5 3 2 30 30 H 1.09001 * 109.47354 * 304.99897 * 6 3 2 31 31 H 1.09004 * 109.47267 * 184.99828 * 6 3 2 32 32 H 0.96996 * 120.00049 * 185.08356 * 13 12 10 33 33 H 1.08002 * 120.03657 * 0.24364 * 19 18 9 34 34 H 1.08001 * 119.96465 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92152 * 179.97438 * 21 20 19 36 36 H 1.08006 * 119.96219 * 180.02562 * 22 21 20 37 37 H 1.07994 * 120.04227 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3588 1.2632 -0.7212 7 6 3.1415 0.9237 -2.1733 8 8 2.0186 0.7336 -2.5901 9 7 4.1951 0.8312 -3.0088 10 6 5.4704 0.9572 -2.5207 11 1 5.6356 1.3998 -1.5494 12 6 6.5497 0.5157 -3.2752 13 7 6.3604 -0.3398 -4.2548 14 14 8.2701 1.1379 -2.8978 15 1 8.9146 0.2400 -1.9060 16 1 9.0748 1.1559 -4.1457 17 1 8.1884 2.5124 -2.3415 18 6 3.9878 0.6068 -4.3728 19 6 4.1731 1.6390 -5.2845 20 6 3.9615 1.4155 -6.6306 21 6 3.5661 0.1657 -7.0719 22 6 3.3807 -0.8640 -6.1674 23 6 3.5894 -0.6473 -4.8197 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 2.8829 1.0774 1.9563 28 1 2.6614 2.7669 1.4426 29 1 1.2569 1.8013 1.9564 30 1 3.9931 0.5051 -0.2618 31 1 3.8426 2.2370 -0.6443 32 1 7.1209 -0.7047 -4.7337 33 1 4.4814 2.6153 -4.9405 34 1 4.1049 2.2174 -7.3396 35 1 3.4009 -0.0062 -8.1253 36 1 3.0723 -1.8388 -6.5155 37 1 3.4441 -1.4516 -4.1139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195387726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:28 Heat of formation + Delta-G solvation = -47.387422 kcal Electronic energy + Delta-G solvation = -20332.700496 eV Core-core repulsion = 17268.564901 eV Total energy + Delta-G solvation = -3064.135595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.39241 -37.95369 -36.79238 -34.62695 -32.29073 -31.61994 -29.84457 -29.15771 -27.15972 -26.07540 -24.88038 -22.12199 -21.47187 -20.60313 -19.08734 -17.64309 -16.39626 -16.15746 -15.47639 -14.79007 -14.70033 -14.61701 -14.34364 -14.06512 -13.34979 -13.19453 -12.79434 -12.43767 -12.37094 -12.26538 -11.63544 -11.56980 -11.47098 -11.24721 -11.09436 -11.06240 -10.83742 -10.49094 -10.35752 -10.21911 -10.13810 -9.34364 -9.13246 -8.48317 -8.13524 -7.82549 -7.42313 -6.25100 -3.96061 2.49374 2.54897 3.09941 3.20383 3.22421 3.83989 4.05817 4.28599 4.62842 4.88401 5.12651 5.30599 5.46288 5.60180 5.63986 5.81915 5.84380 5.90694 5.93556 6.03026 6.07188 6.07383 6.18796 6.28109 6.41494 6.50917 6.58276 6.60775 6.87943 7.08451 7.35929 7.39957 7.49192 7.68452 7.73162 7.82222 8.02653 8.48262 9.05048 9.43547 9.87646 10.65257 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.008162 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.189906 B = 3429.797332 C = 4707.775372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.372 6.372 3 C 0.102 3.898 4 H 0.062 0.938 5 C -0.173 4.173 6 C -0.118 4.118 7 C 0.472 3.528 8 O -0.588 6.588 9 N -0.418 5.418 10 C -0.355 4.355 11 H 0.102 0.898 12 C 0.045 3.955 13 N -0.846 5.846 14 Si 0.916 3.084 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.240 3.760 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.070 4.070 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.271 0.729 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 3.007 3.626 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C 0.044 3.956 4 H 0.080 0.920 5 C -0.231 4.231 6 C -0.158 4.158 7 C 0.263 3.737 8 O -0.472 6.472 9 N -0.135 5.135 10 C -0.481 4.481 11 H 0.119 0.881 12 C -0.163 4.163 13 N -0.481 5.481 14 Si 0.742 3.258 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.194 1.194 18 C 0.149 3.851 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.140 4.140 23 C -0.089 4.089 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.507 2.684 3.238 6.164 hybrid contribution 1.134 0.364 0.144 1.200 sum -3.373 3.049 3.382 5.666 Atomic orbital electron populations 1.22613 0.82053 1.01810 0.99192 1.87913 1.18921 1.27424 1.94830 1.21826 0.94646 0.85292 0.93874 0.91990 1.22303 1.01815 1.01520 0.97420 1.21548 0.96797 1.03559 0.93922 1.20097 0.84326 0.81836 0.87485 1.90550 1.23595 1.55205 1.77867 1.41348 1.06139 1.62719 1.03317 1.19510 0.80573 1.42905 1.05115 0.88057 1.25239 0.99967 0.95152 0.95895 1.69923 1.31776 1.24911 1.21484 0.86106 0.82139 0.79539 0.77993 1.20307 1.20725 1.19364 1.17129 0.92321 0.91914 0.83774 1.20970 1.02233 0.98446 0.93012 1.20652 1.01954 0.96703 0.94891 1.20725 1.03968 0.93854 0.98140 1.20708 1.02034 0.98026 0.93241 1.20847 0.97592 0.95704 0.94774 0.95356 0.93724 0.90579 0.91857 0.91767 0.92873 0.88769 0.88961 0.91788 0.87486 0.87671 0.87825 0.87638 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.82 101.05 1.09 1.71 16 2 O -0.37 -7.10 9.58 -49.66 -0.48 -7.57 16 3 C 0.10 1.77 2.27 -26.73 -0.06 1.70 16 4 H 0.06 1.10 7.60 -51.93 -0.39 0.70 16 5 C -0.17 -2.30 9.53 37.16 0.35 -1.95 16 6 C -0.12 -2.30 3.82 -27.89 -0.11 -2.41 16 7 C 0.47 11.44 7.43 -10.98 -0.08 11.36 16 8 O -0.59 -15.44 15.20 -8.87 -0.13 -15.58 16 9 N -0.42 -10.65 2.66 -58.98 -0.16 -10.80 16 10 C -0.36 -8.89 9.09 -14.94 -0.14 -9.02 16 11 H 0.10 2.34 6.56 -52.49 -0.34 2.00 16 12 C 0.05 1.14 5.15 -17.49 -0.09 1.05 16 13 N -0.85 -22.27 10.74 55.49 0.60 -21.67 16 14 Si 0.92 19.39 29.60 -169.99 -5.03 14.36 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 C 0.24 6.07 2.43 -83.70 -0.20 5.86 16 19 C -0.13 -2.97 9.84 -39.37 -0.39 -3.36 16 20 C -0.12 -2.54 10.04 -39.61 -0.40 -2.94 16 21 C -0.15 -2.95 10.04 -39.53 -0.40 -3.35 16 22 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 23 C -0.07 -1.71 8.69 -39.37 -0.34 -2.06 16 24 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 25 H 0.04 0.72 8.08 -51.93 -0.42 0.31 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.63 7.87 -51.93 -0.41 0.23 16 30 H 0.09 1.84 7.99 -51.93 -0.41 1.43 16 31 H 0.09 1.60 7.85 -51.93 -0.41 1.19 16 32 H 0.27 6.87 8.32 -40.82 -0.34 6.54 16 33 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 34 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.11 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.11 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -30.04 315.14 -6.92 -36.96 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.32 Total: 5.94 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.15 Total: -6.38 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.44 Total: -32.48 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.61 Total: -23.15 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.04 -6.92 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195387726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.429 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds