Wall clock time and date at job start Mon Mar 30 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47280 * 2 1 4 4 N 1.46497 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00182 * 263.88182 * 4 3 2 6 6 H 1.08000 * 120.00151 * 193.50368 * 5 4 3 7 7 C 1.38949 * 120.00040 * 13.49130 * 5 4 3 8 8 N 1.31412 * 120.00053 * 14.55276 * 7 5 4 9 9 Si 1.86804 * 120.00265 * 194.54393 * 7 5 4 10 10 H 1.48502 * 109.46755 * 90.00588 * 9 7 5 11 11 H 1.48503 * 109.47245 * 210.00259 * 9 7 5 12 12 H 1.48498 * 109.46932 * 330.00774 * 9 7 5 13 13 C 1.34772 * 120.00044 * 83.88063 * 4 3 2 14 14 O 1.21296 * 120.00201 * 185.64587 * 13 4 3 15 15 C 1.50697 * 120.00129 * 5.64280 * 13 4 3 16 16 H 1.09002 * 109.47064 * 319.35928 * 15 13 4 17 17 O 1.42898 * 109.47753 * 199.35663 * 15 13 4 18 18 C 1.50702 * 109.47191 * 79.35310 * 15 13 4 19 19 C 1.38227 * 120.00551 * 252.27526 * 18 15 13 20 20 C 1.38234 * 120.00354 * 179.97438 * 19 18 15 21 21 C 1.38238 * 119.99796 * 359.95738 * 20 19 18 22 22 C 1.38230 * 119.99888 * 359.97438 * 21 20 19 23 23 C 1.38229 * 120.00300 * 0.06361 * 22 21 20 24 24 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47436 * 300.00241 * 1 2 3 26 26 H 1.09005 * 109.47046 * 59.99998 * 1 2 3 27 27 H 1.09000 * 109.47436 * 239.99759 * 2 1 3 28 28 H 1.09005 * 109.47046 * 120.00002 * 2 1 3 29 29 H 1.09001 * 109.46569 * 59.99649 * 3 2 1 30 30 H 1.08988 * 109.47112 * 299.99838 * 3 2 1 31 31 H 0.97004 * 120.00379 * 179.97438 * 8 7 5 32 32 H 0.96702 * 113.99603 * 300.00614 * 17 15 13 33 33 H 1.08000 * 119.99709 * 359.97368 * 19 18 15 34 34 H 1.07995 * 120.00454 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00008 * 179.72069 * 21 20 19 36 36 H 1.08001 * 119.99731 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.00488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.5691 1.1814 6 1 5.2476 1.7876 1.1714 7 6 3.5235 1.4167 2.3911 8 7 2.3255 0.8772 2.4178 9 14 4.3306 1.9783 3.9794 10 1 3.9702 3.3945 4.2438 11 1 3.8574 1.1293 5.1022 12 1 5.8054 1.8577 3.8548 13 6 4.1793 1.3178 -1.1596 14 8 5.3879 1.2148 -1.1506 15 6 3.4319 1.3065 -2.4681 16 1 2.5208 0.7178 -2.3610 17 8 4.2559 0.7285 -3.4825 18 6 3.0749 2.7185 -2.8550 19 6 1.7637 3.1478 -2.7708 20 6 1.4363 4.4432 -3.1252 21 6 2.4205 5.3097 -3.5630 22 6 3.7320 4.8808 -3.6458 23 6 4.0592 3.5852 -3.2922 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.8604 0.7704 3.2623 32 1 5.0858 1.2018 -3.6320 33 1 0.9949 2.4711 -2.4282 34 1 0.4118 4.7785 -3.0598 35 1 2.1641 6.3204 -3.8441 36 1 4.5008 5.5577 -3.9882 37 1 5.0838 3.2500 -3.3573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227634142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:33 Heat of formation + Delta-G solvation = -50.003091 kcal Electronic energy + Delta-G solvation = -20653.178304 eV Core-core repulsion = 17588.929285 eV Total energy + Delta-G solvation = -3064.249019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82800 -38.12969 -36.16638 -34.99049 -32.42724 -31.60866 -30.96461 -30.65435 -26.92419 -25.63073 -24.08637 -22.41282 -21.55401 -20.66455 -19.31616 -17.39247 -17.01761 -16.58879 -15.61291 -15.25541 -14.83528 -14.24159 -14.02626 -13.70356 -13.63852 -13.32383 -13.12062 -12.92857 -12.46254 -12.30109 -11.80887 -11.66009 -11.40524 -11.17074 -10.97780 -10.90291 -10.75481 -10.44769 -10.33499 -10.15151 -10.11777 -9.71314 -8.90525 -8.82657 -8.69205 -8.07910 -7.71963 -6.30853 -3.86463 1.52437 1.61085 3.12364 3.22937 3.27991 3.72112 3.99171 4.08899 4.69711 4.93990 5.02255 5.09368 5.14332 5.21357 5.33360 5.59349 5.63755 5.74296 5.89737 5.97455 6.01169 6.13802 6.23818 6.27998 6.37546 6.60625 6.66120 6.68166 6.81420 6.84088 6.88962 7.18303 7.32993 7.47941 7.73577 7.92453 8.07480 8.47531 9.12754 9.38299 9.90275 10.63926 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.007362 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.034722 B = 3802.646597 C = 4024.180063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.430 5.430 5 C -0.299 4.299 6 H 0.101 0.899 7 C 0.027 3.973 8 N -0.871 5.871 9 Si 0.927 3.073 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.419 3.581 14 O -0.589 6.589 15 C 0.134 3.866 16 H 0.117 0.883 17 O -0.541 6.541 18 C -0.098 4.098 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.104 4.104 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.038 0.962 31 H 0.267 0.733 32 H 0.377 0.623 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 5.449 -7.758 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C -0.008 4.008 4 N -0.148 5.148 5 C -0.426 4.426 6 H 0.119 0.881 7 C -0.175 4.175 8 N -0.511 5.511 9 Si 0.754 3.246 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.207 3.793 14 O -0.475 6.475 15 C 0.072 3.928 16 H 0.134 0.866 17 O -0.346 6.346 18 C -0.099 4.099 19 C -0.124 4.124 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.122 4.122 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.200 4.924 -7.609 10.449 hybrid contribution 0.576 0.634 0.980 1.301 sum -4.625 5.558 -6.629 9.810 Atomic orbital electron populations 1.21599 0.97203 1.00113 1.00547 1.21963 0.94073 0.98272 1.02194 1.21797 0.80475 0.97044 1.01488 1.43778 1.05576 1.60169 1.05272 1.19788 0.95675 1.45122 0.82060 0.88114 1.25266 0.96437 0.96435 0.99365 1.70048 1.13485 1.40936 1.26677 0.85910 0.79572 0.78476 0.80686 1.20434 1.20926 1.19499 1.20471 0.88465 0.84919 0.85495 1.90506 1.14162 1.56173 1.86648 1.20746 0.94346 0.90352 0.87391 0.86558 1.86515 1.35050 1.56928 1.56133 1.20413 0.94079 0.96501 0.98897 1.21077 0.95643 0.96482 0.99244 1.21078 0.99283 0.93754 0.99751 1.21094 0.93271 0.99399 1.00559 1.21056 0.96459 0.95742 1.00529 1.20951 0.99119 0.93640 0.98515 0.94026 0.92570 0.94550 0.95371 0.87903 0.87362 0.94432 0.92282 0.77427 0.85512 0.86097 0.86381 0.86211 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.13 -2.61 5.49 -26.73 -0.15 -2.76 16 3 C 0.12 2.52 4.21 -4.04 -0.02 2.50 16 4 N -0.43 -10.87 2.64 -114.82 -0.30 -11.17 16 5 C -0.30 -8.18 9.42 -14.93 -0.14 -8.32 16 6 H 0.10 2.93 7.33 -52.49 -0.38 2.55 16 7 C 0.03 0.69 5.10 -17.47 -0.09 0.60 16 8 N -0.87 -21.60 8.11 55.50 0.45 -21.15 16 9 Si 0.93 20.37 29.58 -169.99 -5.03 15.34 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.42 10.34 6.71 -10.99 -0.07 10.26 16 14 O -0.59 -16.38 15.98 -13.58 -0.22 -16.59 16 15 C 0.13 2.69 2.89 -29.04 -0.08 2.60 16 16 H 0.12 2.24 5.58 -51.93 -0.29 1.95 16 17 O -0.54 -10.54 13.04 -54.35 -0.71 -11.25 16 18 C -0.10 -1.73 4.75 -104.62 -0.50 -2.23 16 19 C -0.11 -1.66 8.24 -39.59 -0.33 -1.99 16 20 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 21 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 22 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 23 C -0.10 -1.72 9.19 -39.58 -0.36 -2.08 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.03 0.57 6.95 -51.93 -0.36 0.21 16 28 H 0.10 2.45 6.23 -51.93 -0.32 2.13 16 29 H 0.11 2.57 5.86 -51.93 -0.30 2.27 16 30 H 0.04 0.72 3.40 -51.94 -0.18 0.55 16 31 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 32 H 0.38 6.53 7.38 45.56 0.34 6.87 16 33 H 0.13 1.82 6.65 -52.49 -0.35 1.47 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.95 7.13 -52.48 -0.37 1.58 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -30.07 300.13 -7.74 -37.81 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -3.90 Total: 11.96 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.56 Total: -9.47 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.15 Total: -32.33 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.93 Total: -27.84 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.07 -7.74 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227634142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.191 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds